CU096202 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU096202
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 10390324 .. 10391959 (-)
Sequence length	490

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AACCGCCAGATCTGTGGTAAAGAGCACCAAAAGCCTCTGCCTATAATACAAGCCGCACTTAACAAACAGCTGCTGCTAGCTTCATTATTTCTTCTTTCAAATTTCGTCCAAAAATTGGATTTTAAACTGTTAATGCTTGTAATTCTCTGTTCCTATGTGCACCATTGTACAAAAGTAATGCTCAAACGATGAAAGGGCCCCCTTTTTTTTCCTTTTTTGACAATTGGAGCCTACTTTGTGCTTCCTATGGCTATGGCCGTATTCCCCAGCCACGCTTGGCTAGTTCTTCCCTCACTCGAGTAGCTGCTTCGGCCGTGTCGTTCAGCGGAGGATAACTCCAGCTCTCTGAGATATCCTCAGTCCCTGTAAATGGGCGGATGACTCCTCTCTCCTTCAAGGATTTATGGAACGCTGAATACTTCCACTTACAGCGCTCAGTTCCAATGACATAGACAGGCTTCCCAGTACTGCAAACCTCACTTATCATGCT

Library


Library category	ESTs
fruit (8DPP) library	4
gynoecious flower library	3
hermaphrodite flower library	3

Homology

[Close]

BLAST of CU096202 vs. Swiss-Prot
Match: ELM1_ARATH (Mitochondrial fission protein ELM1 OS=Arabidopsis thaliana GN=ELM1 PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.5e-30
Identity = 58/78 (74.36%), Postives = 65/78 (83.33%), Query Frame = -1


Query: 257 SMISEVCSTGKPVYVIGTERCKWKYSAFHKSLKERGVIRPFTGTEDISESWSYPPLNDTA 316
           S+ISE CSTGKPVYV+G + CKWK + F KSL+ERGV+R FTG ED+SESWSYPPLNDTA
Sbjct: 349 SLISEACSTGKPVYVVGADHCKWKIAEFQKSLRERGVVRSFTGFEDMSESWSYPPLNDTA 408

Query: 317 EAATRVREELAKRGWGIR 376
           EAATR+R ELA RGW +R
Sbjct: 409 EAATRIRRELAARGWSLR 426

Query: 377  436
           
Sbjct: 469  426

Query: 437  491
           
Sbjct: 529  426

[Close]

BLAST of CU096202 vs. TrEMBL
Match: A0A0A0LYB1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G166800 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 7.7e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = -1


Query: 254 SMISEVCSTGKPVYVIGTERCKWKYSAFHKSLKERGVIRPFTGTEDISESWSYPPLNDTA 313
           SMISEVCSTGKPVYVIGTERCKWKYSAFHKSLKERGVIRPFTGTEDISESWSYPPLNDTA
Sbjct: 189 SMISEVCSTGKPVYVIGTERCKWKYSAFHKSLKERGVIRPFTGTEDISESWSYPPLNDTA 248

Query: 314 EAATRVREELAKRGWGIRP 373
           EAATRVREELAKRGWGIRP
Sbjct: 249 EAATRVREELAKRGWGIRP 267

Query: 374  433
           
Sbjct: 309  267

Query: 434  491
           
Sbjct: 369  267

[Close]

BLAST of CU096202 vs. TrEMBL
Match: W1PZN4_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00040p00135180 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.5e-31
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = -1


Query: 254 SMISEVCSTGKPVYVIGTERCKWKYSAFHKSLKERGVIRPFTGTEDISESWSYPPLNDTA 313
           SM+SE CSTGKPVYV G ERC WK+SAFHK+L+ERGV+RPFTG EDISESWSYPPLNDTA
Sbjct: 347 SMLSEACSTGKPVYVTGAERCTWKFSAFHKTLQERGVVRPFTGNEDISESWSYPPLNDTA 406

Query: 314 EAATRVREELAKRGWGIRP 373
           EAA+RVR+ LA+RGW +RP
Sbjct: 407 EAASRVRQALAERGWTLRP 425

Query: 374  433
           
Sbjct: 467  425

Query: 434  491
           
Sbjct: 527  425

[Close]

BLAST of CU096202 vs. TrEMBL
Match: A0A0D2PXV6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G122900 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 5.9e-31
Identity = 63/79 (79.75%), Postives = 73/79 (92.41%), Query Frame = -1


Query: 254 SMISEVCSTGKPVYVIGTERCKWKYSAFHKSLKERGVIRPFTGTEDISESWSYPPLNDTA 313
           S+ISE CSTGKPVYV+G ERCKWK S FHKSL+ERGV+RPFTG+EDI+ESWSYPPLNDTA
Sbjct: 342 SLISEACSTGKPVYVMGPERCKWKLSDFHKSLRERGVVRPFTGSEDIAESWSYPPLNDTA 401

Query: 314 EAATRVREELAKRGWGIRP 373
           EAA++VRE LA+RGW +RP
Sbjct: 402 EAASQVREALAERGWRVRP 420

Query: 374  433
           
Sbjct: 462  420

Query: 434  491
           
Sbjct: 522  420

[Close]

BLAST of CU096202 vs. TrEMBL
Match: F6HHD8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g00830 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.0e-30
Identity = 63/79 (79.75%), Postives = 71/79 (89.87%), Query Frame = -1


Query: 254 SMISEVCSTGKPVYVIGTERCKWKYSAFHKSLKERGVIRPFTGTEDISESWSYPPLNDTA 313
           SMISE CSTGKPVYVIG ERC WK+S FH +L+ERGV+RPFTG+EDISESWSYPPLNDTA
Sbjct: 342 SMISEACSTGKPVYVIGAERCTWKFSDFHNTLRERGVVRPFTGSEDISESWSYPPLNDTA 401

Query: 314 EAATRVREELAKRGWGIRP 373
           EAA +VRE LA+RGW +RP
Sbjct: 402 EAAIKVREALAERGWRLRP 420

Query: 374  433
           
Sbjct: 462  420

Query: 434  491
           
Sbjct: 522  420

[Close]

BLAST of CU096202 vs. TrEMBL
Match: W9RQ34_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016303 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.3e-30
Identity = 64/79 (81.01%), Postives = 72/79 (91.14%), Query Frame = -1


Query: 254 SMISEVCSTGKPVYVIGTERCKWKYSAFHKSLKERGVIRPFTGTEDISESWSYPPLNDTA 313
           SMISEVCSTGKPVYV+G E CKWK S FHKSL++RGVIRPFTG+EDISESWSYPPLNDTA
Sbjct: 349 SMISEVCSTGKPVYVMGAEYCKWKLSDFHKSLRDRGVIRPFTGSEDISESWSYPPLNDTA 408

Query: 314 EAATRVREELAKRGWGIRP 373
           EAA++V E LA+RGW +RP
Sbjct: 409 EAASKVHEALAERGWRLRP 427

Query: 374  433
           
Sbjct: 469  427

Query: 434  491
           
Sbjct: 529  427

[Close]

BLAST of CU096202 vs. NCBI nr
Match: gi|449443460|ref|XP_004139495.1| (PREDICTED: mitochondrial fission protein ELM1 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 1.3e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = -1


Query: 254 SMISEVCSTGKPVYVIGTERCKWKYSAFHKSLKERGVIRPFTGTEDISESWSYPPLNDTA 313
           SMISEVCSTGKPVYVIGTERCKWKYSAFHKSLKERGVIRPFTGTEDISESWSYPPLNDTA
Sbjct: 347 SMISEVCSTGKPVYVIGTERCKWKYSAFHKSLKERGVIRPFTGTEDISESWSYPPLNDTA 406

Query: 314 EAATRVREELAKRGWGIRP 373
           EAATRVREELAKRGWGIRP
Sbjct: 407 EAATRVREELAKRGWGIRP 425

Query: 374  433
           
Sbjct: 467  425

Query: 434  491
           
Sbjct: 527  425

[Close]

BLAST of CU096202 vs. NCBI nr
Match: gi|700209855|gb|KGN64951.1| (hypothetical protein Csa_1G166800 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 1.3e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = -1


Query: 254 SMISEVCSTGKPVYVIGTERCKWKYSAFHKSLKERGVIRPFTGTEDISESWSYPPLNDTA 313
           SMISEVCSTGKPVYVIGTERCKWKYSAFHKSLKERGVIRPFTGTEDISESWSYPPLNDTA
Sbjct: 189 SMISEVCSTGKPVYVIGTERCKWKYSAFHKSLKERGVIRPFTGTEDISESWSYPPLNDTA 248

Query: 314 EAATRVREELAKRGWGIRP 373
           EAATRVREELAKRGWGIRP
Sbjct: 249 EAATRVREELAKRGWGIRP 267

Query: 374  433
           
Sbjct: 309  267

Query: 434  491
           
Sbjct: 369  267

[Close]

BLAST of CU096202 vs. NCBI nr
Match: gi|659071638|ref|XP_008461166.1| (PREDICTED: mitochondrial fission protein ELM1 isoform X1 [Cucumis melo])

HSP 1 Score: 171.4 bits (433), Expect = 1.3e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = -1


Query: 254 SMISEVCSTGKPVYVIGTERCKWKYSAFHKSLKERGVIRPFTGTEDISESWSYPPLNDTA 313
           SMISEVCSTGKPVYVIGTERCKWKYSAFHKSLKERGVIRPFTGTEDISESWSYPPLNDTA
Sbjct: 347 SMISEVCSTGKPVYVIGTERCKWKYSAFHKSLKERGVIRPFTGTEDISESWSYPPLNDTA 406

Query: 314 EAATRVREELAKRGWGIRP 373
           EAATRVREELAKRGWGIRP
Sbjct: 407 EAATRVREELAKRGWGIRP 425

Query: 374  433
           
Sbjct: 467  425

Query: 434  491
           
Sbjct: 527  425

[Close]

BLAST of CU096202 vs. NCBI nr
Match: gi|769803456|ref|XP_011625954.1| (PREDICTED: mitochondrial fission protein ELM1 isoform X1 [Amborella trichopoda])

HSP 1 Score: 146.0 bits (367), Expect = 5.8e-32
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = -1


Query: 254 SMISEVCSTGKPVYVIGTERCKWKYSAFHKSLKERGVIRPFTGTEDISESWSYPPLNDTA 313
           SM+SE CSTGKPVYV G ERC WK+SAFHK+L+ERGV+RPFTG EDISESWSYPPLNDTA
Sbjct: 348 SMLSEACSTGKPVYVTGAERCTWKFSAFHKTLQERGVVRPFTGNEDISESWSYPPLNDTA 407

Query: 314 EAATRVREELAKRGWGIRP 373
           EAA+RVR+ LA+RGW +RP
Sbjct: 408 EAASRVRQALAERGWTLRP 426

Query: 374  433
           
Sbjct: 468  426

Query: 434  491
           
Sbjct: 528  426

[Close]

BLAST of CU096202 vs. NCBI nr
Match: gi|586749912|ref|XP_006851479.1| (PREDICTED: mitochondrial fission protein ELM1 isoform X2 [Amborella trichopoda])

HSP 1 Score: 146.0 bits (367), Expect = 5.8e-32
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = -1


Query: 254 SMISEVCSTGKPVYVIGTERCKWKYSAFHKSLKERGVIRPFTGTEDISESWSYPPLNDTA 313
           SM+SE CSTGKPVYV G ERC WK+SAFHK+L+ERGV+RPFTG EDISESWSYPPLNDTA
Sbjct: 347 SMLSEACSTGKPVYVTGAERCTWKFSAFHKTLQERGVVRPFTGNEDISESWSYPPLNDTA 406

Query: 314 EAATRVREELAKRGWGIRP 373
           EAA+RVR+ LA+RGW +RP
Sbjct: 407 EAASRVRQALAERGWTLRP 425

Query: 374  433
           
Sbjct: 467  425

Query: 434  491
           
Sbjct: 527  425

The following BLAST results are available for this feature:

BLAST of CU096202 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ELM1_ARATH	5.5e-30	74.36	Mitochondrial fission protein ELM1 OS=Arabidopsis thaliana GN=ELM1 PE=1 SV=1	[more]

BLAST of CU096202 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYB1_CUCSA	7.7e-39	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G166800 PE=4 SV=1	[more]
W1PZN4_AMBTC	3.5e-31	79.75	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00040p00135180 PE=4 SV=...	[more]
A0A0D2PXV6_GOSRA	5.9e-31	79.75	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G122900 PE=4 SV=1	[more]
F6HHD8_VITVI	1.0e-30	79.75	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g00830 PE=4 SV=...	[more]
W9RQ34_9ROSA	1.3e-30	81.01	Uncharacterized protein OS=Morus notabilis GN=L484_016303 PE=4 SV=1	[more]

BLAST of CU096202 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443460\|ref\|XP_004139495.1\|	1.3e-39	100.00	PREDICTED: mitochondrial fission protein ELM1 [Cucumis sativus]	[more]
gi\|700209855\|gb\|KGN64951.1\|	1.3e-39	100.00	hypothetical protein Csa_1G166800 [Cucumis sativus]	[more]
gi\|659071638\|ref\|XP_008461166.1\|	1.3e-39	100.00	PREDICTED: mitochondrial fission protein ELM1 isoform X1 [Cucumis melo]	[more]
gi\|769803456\|ref\|XP_011625954.1\|	5.8e-32	79.75	PREDICTED: mitochondrial fission protein ELM1 isoform X1 [Amborella trichopoda]	[more]
gi\|586749912\|ref\|XP_006851479.1\|	5.8e-32	79.75	PREDICTED: mitochondrial fission protein ELM1 isoform X2 [Amborella trichopoda]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR009367	Elm1-like

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G166800	Csa1G166800	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02K87RA	FKNP3UI02K87RA	EST
FKNP3UI02LBBCV	FKNP3UI02LBBCV	EST
FKNP3UI02MZM2R	FKNP3UI02MZM2R	EST
FKNP3UI02N0QWP	FKNP3UI02N0QWP	EST
G0071227	G0071227	EST
G0094984	G0094984	EST
G0140353	G0140353	EST
H0055960	H0055960	EST
H0087135	H0087135	EST
H0150136	H0150136	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009367	Mitochondrial fission protein ELM1-like	PFAM	PF06258	Mito_fiss_Elm1	coord: 1..70 score: 5.7
None	No IPR available	PANTHER	PTHR33986	FAMILY NOT NAMED	coord: 1..79 score: 4.8
None	No IPR available	PANTHER	PTHR33986:SF3	MITOCHONDRIAL FISSION PROTEIN ELM1	coord: 1..79 score: 4.8