CU095249 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU095249
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 19556627 .. 19556925 (-)
Sequence length	300

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TGGAGCAAACCAAAGACCGAGCTTGTGAAAATGGGTTACCGGTGGCTCGCTGACAGGCTTGCTCGGATGTGAAGCTGCTGATATCAACCATTGAGCGGACCTGGACATTCAAGTTAATACTGTGCACAAGACAGTTGATGTCTAATTTGTGTTTATGTGTAAGAATTGTAATTTTATTAAGGTCTTTTACAGCTTTTGGACATAAGAATCCATTGTTCAATAGTGTAATTTTATTTTACATATATATTTTTTGTGTACTTCCAAAAGCAAAAAAATTGTTGAAAGAAATAGTTCTATTTG

Library


Library category	ESTs
gynoecious flower library	2
hermaphrodite flower library	3

Homology

[Close]

BLAST of CU095249 vs. TrEMBL
Match: A0A0A0L7L7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G405515 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = -3


Query: 2  MVDISSFTSEQACQRATGNPFSQARSLVCS 61
          MVDISSFTSEQACQRATGNPFSQARSLVCS
Sbjct: 1  MVDISSFTSEQACQRATGNPFSQARSLVCS 30

Query: 62  92
          
Sbjct: 61  30

[Close]

BLAST of CU095249 vs. NCBI nr
Match: gi|700202817|gb|KGN57950.1| (hypothetical protein Csa_3G405515 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 5.2e-07
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = -3


Query: 2  MVDISSFTSEQACQRATGNPFSQARSLVCS 61
          MVDISSFTSEQACQRATGNPFSQARSLVCS
Sbjct: 1  MVDISSFTSEQACQRATGNPFSQARSLVCS 30

Query: 62  92
          
Sbjct: 61  30

The following BLAST results are available for this feature:

BLAST of CU095249 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7L7_CUCSA	2.1e-07	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G405515 PE=4 SV=1	[more]

BLAST of CU095249 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202817\|gb\|KGN57950.1\|	5.2e-07	100.00	hypothetical protein Csa_3G405515 [Cucumis sativus]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G405510	Csa3G405510	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0051133	G0051133	EST
G0088294	G0088294	EST
H0001918	H0001918	EST
H0075930	H0075930	EST
H0162760	H0162760	EST