CU094378 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU094378
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 8316307 .. 8324789 (-)
Sequence length509
The following sequences are available for this feature:

transcribed_cluster sequence

TGGTCCTATTTACGGTCCGGGGGAGGGGTTTCTTCATTTCATTTCCAATATTTCTTGCGATTTGCTATATCAAGAGTGATTCTAGGGTTTCTTTCATCTTCTACGTTTCAGATCTATTCTGCGAATTCATCGAGATGCCTCCAAGGACGGTAAAGAGAGGCTCGGCATCCGCGGGAGCGAAGAGAGGTGGAAGGACTACCAGAGGGACGCCAAAGAAACAAGATCAGCCGGCGGAAAGGGAGGTTGTGGAAGAGACGGCGAAGGTTGAGGAGGTATCGGTGGTTGAGGTTGAAACCAAGGAGCTTCGCGAGGAAGTCGCGGTTCAGGAAAAAAGCCCTGTTGTAGAAGATAAGCCTGTTATTCAGAATAAACCGGTAGTTGTCGAGGAGAAACAGCCGATTGCTGTAGACGTTGGGGAGGTCGAATCTTCGCGCGAAGTCAGATCGGATTCGAAACAATCTGTTCCTACCTAAAAGTCAAGACTGTTTTTGTTGATAGTCTCCCTGCCT
BLAST of CU094378 vs. TrEMBL
Match: A0A0A0L6P0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129610 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.6e-13
Identity = 52/111 (46.85%), Postives = 52/111 (46.85%), Query Frame = 3

Query: 135 MPPRTVXXXXXXXXXXXXXXXXXXXPKKQDQPXXXXXXXXXXXXXXXXXXXXXXXXLREE 194
           MPPRTV                   PKKQDQP                        LREE
Sbjct: 1   MPPRTVKRGSASAGAKRGGRTTRGTPKKQDQPAEREVVEETAKVEEVSVVEVETKELREE 60

Query: 195 VAVQEKSPVVEDKPVIQNKPVVVEEKQPIAXXXXXXXXXXXXXXXXKQSVP 254
           VAVQEKSPVVEDKPVIQNKPVVVEEKQPIA                KQSVP
Sbjct: 61  VAVQEKSPVVEDKPVIQNKPVVVEEKQPIAVDVGEVESSREVRSDSKQSVP 111

Query: 255 314
           
Sbjct: 121 111

Query: 315 374
           
Sbjct: 181 111

Query: 375 434
           
Sbjct: 241 111

Query: 435 468
           
Sbjct: 301 111

BLAST of CU094378 vs. NCBI nr
Match: gi|659075752|ref|XP_008438311.1| (PREDICTED: nucleolin [Cucumis melo])

HSP 1 Score: 80.9 bits (198), Expect = 2.4e-12
Identity = 52/111 (46.85%), Postives = 52/111 (46.85%), Query Frame = 3

Query: 135 MPPRTVXXXXXXXXXXXXXXXXXXXPKKQDQPXXXXXXXXXXXXXXXXXXXXXXXXLREE 194
           MPPRTV                   PKKQDQP                        LREE
Sbjct: 1   MPPRTVKRGSASAGAKRGGRTTRGTPKKQDQPAEREVAEETAKVEEVSVVEVETKELREE 60

Query: 195 VAVQEKSPVVEDKPVIQNKPVVVEEKQPIAXXXXXXXXXXXXXXXXKQSVP 254
           VAVQEKSPVVEDKPVIQNKPVVVEEKQPIA                KQSVP
Sbjct: 61  VAVQEKSPVVEDKPVIQNKPVVVEEKQPIAVDVGEVESSHEVRSDSKQSVP 111

Query: 255 314
           
Sbjct: 121 111

Query: 315 374
           
Sbjct: 181 111

Query: 375 434
           
Sbjct: 241 111

Query: 435 468
           
Sbjct: 301 111

BLAST of CU094378 vs. NCBI nr
Match: gi|449432380|ref|XP_004133977.1| (PREDICTED: nucleolin [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 2.4e-12
Identity = 52/111 (46.85%), Postives = 52/111 (46.85%), Query Frame = 3

Query: 135 MPPRTVXXXXXXXXXXXXXXXXXXXPKKQDQPXXXXXXXXXXXXXXXXXXXXXXXXLREE 194
           MPPRTV                   PKKQDQP                        LREE
Sbjct: 1   MPPRTVKRGSASAGAKRGGRTTRGTPKKQDQPAEREVVEETAKVEEVSVVEVETKELREE 60

Query: 195 VAVQEKSPVVEDKPVIQNKPVVVEEKQPIAXXXXXXXXXXXXXXXXKQSVP 254
           VAVQEKSPVVEDKPVIQNKPVVVEEKQPIA                KQSVP
Sbjct: 61  VAVQEKSPVVEDKPVIQNKPVVVEEKQPIAVDVGEVESSREVRSDSKQSVP 111

Query: 255 314
           
Sbjct: 121 111

Query: 315 374
           
Sbjct: 181 111

Query: 375 434
           
Sbjct: 241 111

Query: 435 468
           
Sbjct: 301 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L6P0_CUCSA2.6e-1346.85Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129610 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659075752|ref|XP_008438311.1|2.4e-1246.85PREDICTED: nucleolin [Cucumis melo][more]
gi|449432380|ref|XP_004133977.1|2.4e-1246.85PREDICTED: nucleolin [Cucumis sativus][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa3G129610Csa3G129610gene
Csa3G129620Csa3G129620gene
Csa3G129630Csa3G129630gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02MEI0DFKNP3UI02MEI0DEST
FKNP3UI02NQTVAFKNP3UI02NQTVAEST
G0095675G0095675EST
G0104306G0104306EST
G0106374G0106374EST
G0130048G0130048EST
H0169464H0169464EST