CU093992 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU093992
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 15420660 .. 15420902 (+)
Sequence length248
The following sequences are available for this feature:

transcribed_cluster sequence

TTGATTGACGATACAGCCTACGGTAATCAAGCGATCGGCTATTCCGTTTGAGATTGAATTTCGCACTGTTGGATCGAGAAACAGAGCTCTGCAATCCGGACAATGATTCTGAGCGTTTTCGAAATACAGTTTTGTTTTCGACTAATCTCTTCCTTCCAGGAACTTTTATCGGCGGTAATACGCGTAGAGTGATCATTGTTGAGAGGGAGCAATCTACCGCAGAAGATCAAATCCTCTGCGGGAAAATC
BLAST of CU093992 vs. TrEMBL
Match: A0A0A0LU50_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G423130 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.2e-13
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = -1

Query: 117 PAEDLIFCGRLLPLNNDHSTRITADKSSWKEEISRKQNCISK 176
           PAEDLIFCGRLLPLNNDHSTRITADKSSWKEEISRKQ    K
Sbjct: 80  PAEDLIFCGRLLPLNNDHSTRITADKSSWKEEISRKQTVFRK 121

Query: 177 236
           
Sbjct: 140 121

Query: 237 243
           
Sbjct: 200 121

BLAST of CU093992 vs. TrEMBL
Match: A0A0A0LU50_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G423130 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.1e-04
Identity = 27/51 (52.94%), Postives = 31/51 (60.78%), Query Frame = -2

Query: 2   RKRLVENKTVFRKRXXXXXXXXXXXXXXXXAKFNLKRNSRSLDYRRLYRQS 61
           ++ +   +TVFRKR                AKFNLKRNSRSLDYRRLYRQS
Sbjct: 109 KEEISRKQTVFRKRSESLSGLQSSVSRSNSAKFNLKRNSRSLDYRRLYRQS 159

Query: 62  121
           
Sbjct: 169 159

Query: 122 155
           
Sbjct: 229 159

BLAST of CU093992 vs. NCBI nr
Match: gi|778660738|ref|XP_011656822.1| (PREDICTED: uncharacterized protein LOC105435774 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 4.0e-13
Identity = 38/42 (90.48%), Postives = 38/42 (90.48%), Query Frame = -1

Query: 117 PAEDLIFCGRLLPLNNDHSTRITADKSSWKEEISRKQNCISK 176
           PAEDLIFCGRLLPLNNDHSTRITADKSSWKEEISRKQ    K
Sbjct: 80  PAEDLIFCGRLLPLNNDHSTRITADKSSWKEEISRKQTVFRK 121

Query: 177 236
           
Sbjct: 140 121

Query: 237 243
           
Sbjct: 200 121

BLAST of CU093992 vs. NCBI nr
Match: gi|659107303|ref|XP_008453606.1| (PREDICTED: uncharacterized protein LOC103494265 [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-10
Identity = 36/42 (85.71%), Postives = 36/42 (85.71%), Query Frame = -1

Query: 117 PAEDLIFCGRLLPLNNDHSTRITADKSSWKEEISRKQNCISK 176
           PAEDLIFCGRLLPL NDHSTRITADKS WKEEISRKQ    K
Sbjct: 79  PAEDLIFCGRLLPL-NDHSTRITADKSFWKEEISRKQTVFRK 119

Query: 177 236
           
Sbjct: 139 119

Query: 237 243
           
Sbjct: 199 119

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LU50_CUCSA6.2e-1390.48Uncharacterized protein OS=Cucumis sativus GN=Csa_1G423130 PE=4 SV=1[more]
A0A0A0LU50_CUCSA3.1e-0452.94Uncharacterized protein OS=Cucumis sativus GN=Csa_1G423130 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778660738|ref|XP_011656822.1|4.0e-1390.48PREDICTED: uncharacterized protein LOC105435774 [Cucumis sativus][more]
gi|659107303|ref|XP_008453606.1|2.4e-1085.71PREDICTED: uncharacterized protein LOC103494265 [Cucumis melo][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G423130Csa1G423130gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0140116H0140116EST
H0181253H0181253EST
H0191220H0191220EST