CU093923 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU093923
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Transducin/WD40 repeat protein
Location	Chr2 : 13757131 .. 13757594 (-)
Sequence length	465

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TGACCCAAGTGTTCATAAGCGAGTTGGTTACTCTCCCCACTTTAGGCGATTACATCAAATGCTCGATGAGACCCAGTAATTATGTGGAAGGGAGACGACGGAGGAATCTCTGGATTAAACATTTCGATGCCATTTCGTCACTGAGTTTAAGCGAGGATCAAGCGTTTTTGTACTCTGCTTCATGGGATAAAACTTTTAAGGTCTGGAGAGTTTCCGATTCAAAATGCTTGGAGTCGATTGAGGCTCATGAAGATGCTGTTAACACTCTGGTTCAAGTATCGATGGAATGGTTTACACTGGGTCAGCCGACGGTAGCGTTAAGTTATGGCGGAGGGAGCTTCAAGGGAAGGGAACGAAACATTTCTTCTCACAAACTTTGGTCAAACAGGAATGTGCGGTCACTGCTCTTGCTGTAAACGATGACGCTACTTTCGTTTATTGTGGTTCTTCCGATGGAGTTGTTTA

Library


Library category	ESTs
gynoecious flower library	1
hermaphrodite flower library	2

Homology

[Close]

BLAST of CU093923 vs. TrEMBL
Match: A0A0A0LQ12_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G292220 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.3e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 3


Query: 30  TLPTLGDYIKCSMRPSNYVEGRRRRNLWIKHFDAISSLSLSEDQAFLYSASWDKTFKVWR 89
           TLPTLGDYIKCSMRPSNYVEGRRRRNLWIKHFDAISSLSLSEDQAFLYSASWDKTFKVWR
Sbjct: 193 TLPTLGDYIKCSMRPSNYVEGRRRRNLWIKHFDAISSLSLSEDQAFLYSASWDKTFKVWR 252

Query: 90  VSDSKCLESIEAHEDAVNTLV 149
           VSDSKCLESIEAHEDAVNTLV
Sbjct: 253 VSDSKCLESIEAHEDAVNTLV 273

Query: 150  209
           
Sbjct: 313  273

Query: 210  269
           
Sbjct: 373  273

Query: 270  273
           
Sbjct: 433  273

[Close]

BLAST of CU093923 vs. TrEMBL
Match: A0A0A0LQ12_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G292220 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 8.3e-27
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 2


Query: 278 IDGMVYTGSADGSVKLWRRELQGKGTKHFFSQTLVKQECAVTALAVNDDATFVYCGSSDG 337
           IDGMVYTGSADGSVK+WRRELQGKGTKHFFSQTLVKQECAVTALAVNDDATFVYCGSSDG
Sbjct: 276 IDGMVYTGSADGSVKVWRRELQGKGTKHFFSQTLVKQECAVTALAVNDDATFVYCGSSDG 335

Query: 338 VV 397
           VV
Sbjct: 336 VV 337

Query: 398  457
           
Sbjct: 396  337

Query: 458  464
           
Sbjct: 456  337

HSP 2 Score: 137.5 bits (345), Expect = 1.4e-29
Identity = 65/82 (79.27%), Postives = 73/82 (89.02%), Query Frame = 3


Query: 30  TLPTLGDYIKCSMRPSNYVEGRRRRN-LWIKHFDAISSLSLSEDQAFLYSASWDKTFKVW 89
           TLPT  D+IKCSM+PSNY+E RRRRN LWIKHFDAISSLS+SEDQ  LYSASWDKTFKVW
Sbjct: 188 TLPTFKDFIKCSMKPSNYIEVRRRRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVW 247

Query: 90  RVSDSKCLESIEAHEDAVNTLV 149
           R SD KCLES+ AH+DAVN++V
Sbjct: 248 RTSDYKCLESVIAHDDAVNSIV 269

Query: 150  209
           
Sbjct: 308  269

Query: 210  269
           
Sbjct: 368  269

Query: 270  273
           
Sbjct: 428  269

[Close]

BLAST of CU093923 vs. TrEMBL
Match: V4SPJ6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027384mg PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.1e-21
Identity = 50/61 (81.97%), Postives = 58/61 (95.08%), Query Frame = 2


Query: 281 DGMVYTGSADGSVKLWRRELQGKGTKHFFSQTLVKQECAVTALAVNDDATFVYCGSSDGV 340
           DG+V+TGSADG+VK+WRRELQGKGTKHFFSQTL+KQECAVTALA++ DA  VYCGSSDG+
Sbjct: 273 DGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGL 332

Query: 341 V 400
           V
Sbjct: 333 V 333

Query: 401  460
           
Sbjct: 393  333

Query: 461  464
           
Sbjct: 453  333

HSP 2 Score: 29.3 bits (64), Expect = 5.3e+03
Identity = 17/46 (36.96%), Postives = 23/46 (50.00%), Query Frame = 2


Query: 287 MVYTGSADGSVKLWRRELQGKGTKHFFSQTLVKQECAVTALAVNDD 346
           +V++GSAD S+ +WRR    K  +H     L      V  LAV  D
Sbjct: 364 LVFSGSADMSICIWRR----KENEHICLSMLTGHSGPVKCLAVEKD 405

Query: 347  406
           
Sbjct: 424  405

Query: 407  425
           
Sbjct: 484  405

HSP 3 Score: 135.6 bits (340), Expect = 5.2e-29
Identity = 64/82 (78.05%), Postives = 72/82 (87.80%), Query Frame = 3


Query: 30  TLPTLGDYIKCSMRPSNYVEGRRRRN-LWIKHFDAISSLSLSEDQAFLYSASWDKTFKVW 89
           TLPT  D+IKCSM+PSNY+E RR RN LWIKHFDAISSLS+SEDQ  LYSASWDKTFKVW
Sbjct: 188 TLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVW 247

Query: 90  RVSDSKCLESIEAHEDAVNTLV 149
           R SD KCLES+ AH+DAVN++V
Sbjct: 248 RTSDYKCLESVIAHDDAVNSIV 269

Query: 150  209
           
Sbjct: 308  269

Query: 210  269
           
Sbjct: 368  269

Query: 270  273
           
Sbjct: 428  269

[Close]

BLAST of CU093923 vs. TrEMBL
Match: A0A067GVP2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047728mg PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.1e-21
Identity = 50/61 (81.97%), Postives = 58/61 (95.08%), Query Frame = 2


Query: 281 DGMVYTGSADGSVKLWRRELQGKGTKHFFSQTLVKQECAVTALAVNDDATFVYCGSSDGV 340
           DG+V+TGSADG+VK+WRRELQGKGTKHFFSQTL+KQECAVTALA++ DA  VYCGSSDG+
Sbjct: 273 DGLVFTGSADGTVKVWRRELQGKGTKHFFSQTLLKQECAVTALAISPDAAIVYCGSSDGL 332

Query: 341 V 400
           V
Sbjct: 333 V 333

Query: 401  460
           
Sbjct: 393  333

Query: 461  464
           
Sbjct: 453  333

HSP 2 Score: 29.3 bits (64), Expect = 5.3e+03
Identity = 17/46 (36.96%), Postives = 23/46 (50.00%), Query Frame = 2


Query: 287 MVYTGSADGSVKLWRRELQGKGTKHFFSQTLVKQECAVTALAVNDD 346
           +V++GSAD S+ +WRR    K  +H     L      V  LAV  D
Sbjct: 364 LVFSGSADMSICIWRR----KENEHICLSMLTGHSGPVKCLAVEKD 405

Query: 347  406
           
Sbjct: 424  405

Query: 407  425
           
Sbjct: 484  405

HSP 3 Score: 133.7 bits (335), Expect = 2.0e-28
Identity = 63/84 (75.00%), Postives = 73/84 (86.90%), Query Frame = 3


Query: 24  LVTLPTLGDYIKCSMRPSNYVEGRRRRNL-WIKHFDAISSLSLSEDQAFLYSASWDKTFK 83
           + TLPTL +YIKCSM+PSNYVE RRRRNL WIKH+DAIS LSL+ED + +YSASWDKTFK
Sbjct: 177 VATLPTLRNYIKCSMKPSNYVEVRRRRNLIWIKHYDAISCLSLTEDHSLIYSASWDKTFK 236

Query: 84  VWRVSDSKCLESIEAHEDAVNTLV 143
           VWR S+ KCLES+ AH+DAVN LV
Sbjct: 237 VWRTSNFKCLESVTAHDDAVNALV 260

Query: 144  203
           
Sbjct: 297  260

Query: 204  263
           
Sbjct: 357  260

Query: 264  273
           
Sbjct: 417  260

[Close]

BLAST of CU093923 vs. TrEMBL
Match: K7LNA2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G060400 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 7.5e-20
Identity = 46/62 (74.19%), Postives = 57/62 (91.94%), Query Frame = 2


Query: 278 IDGMVYTGSADGSVKLWRRELQGKGTKHFFSQTLVKQECAVTALAVNDDATFVYCGSSDG 337
           +DGMV+TGSADG+VK+WRRE+QGKGTKH FSQTL+KQECAVTALA+N++   +Y GSSDG
Sbjct: 263 LDGMVFTGSADGTVKIWRREVQGKGTKHLFSQTLLKQECAVTALAINEEGNVLYAGSSDG 322

Query: 338 VV 397
           +V
Sbjct: 323 LV 324

Query: 398  457
           
Sbjct: 383  324

Query: 458  464
           
Sbjct: 443  324

HSP 2 Score: 133.7 bits (335), Expect = 2.0e-28
Identity = 64/82 (78.05%), Postives = 70/82 (85.37%), Query Frame = 3


Query: 30  TLPTLGDYIKCSMRPSNYVEGRRRRN-LWIKHFDAISSLSLSEDQAFLYSASWDKTFKVW 89
           TLPT  DYI+ SM PSNYVE RR RN LWIKHFDAISSLSLSED+ FLYSASWDKT KVW
Sbjct: 174 TLPTFRDYIRSSMNPSNYVEVRRHRNALWIKHFDAISSLSLSEDKKFLYSASWDKTIKVW 233

Query: 90  RVSDSKCLESIEAHEDAVNTLV 149
           R+SDSKCLES+  H+DAVN +V
Sbjct: 234 RISDSKCLESVNVHDDAVNAVV 255

Query: 150  209
           
Sbjct: 294  255

Query: 210  269
           
Sbjct: 354  255

Query: 270  273
           
Sbjct: 414  255

[Close]

BLAST of CU093923 vs. NCBI nr
Match: gi|700206922|gb|KGN62041.1| (hypothetical protein Csa_2G292220 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 2.1e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 3


Query: 30  TLPTLGDYIKCSMRPSNYVEGRRRRNLWIKHFDAISSLSLSEDQAFLYSASWDKTFKVWR 89
           TLPTLGDYIKCSMRPSNYVEGRRRRNLWIKHFDAISSLSLSEDQAFLYSASWDKTFKVWR
Sbjct: 193 TLPTLGDYIKCSMRPSNYVEGRRRRNLWIKHFDAISSLSLSEDQAFLYSASWDKTFKVWR 252

Query: 90  VSDSKCLESIEAHEDAVNTLV 149
           VSDSKCLESIEAHEDAVNTLV
Sbjct: 253 VSDSKCLESIEAHEDAVNTLV 273

Query: 150  209
           
Sbjct: 313  273

Query: 210  269
           
Sbjct: 373  273

Query: 270  273
           
Sbjct: 433  273

[Close]

BLAST of CU093923 vs. NCBI nr
Match: gi|778674206|ref|XP_004148066.2| (PREDICTED: WD repeat-containing protein 5B [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 2.1e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 3


Query: 30  TLPTLGDYIKCSMRPSNYVEGRRRRNLWIKHFDAISSLSLSEDQAFLYSASWDKTFKVWR 89
           TLPTLGDYIKCSMRPSNYVEGRRRRNLWIKHFDAISSLSLSEDQAFLYSASWDKTFKVWR
Sbjct: 134 TLPTLGDYIKCSMRPSNYVEGRRRRNLWIKHFDAISSLSLSEDQAFLYSASWDKTFKVWR 193

Query: 90  VSDSKCLESIEAHEDAVNTLV 149
           VSDSKCLESIEAHEDAVNTLV
Sbjct: 194 VSDSKCLESIEAHEDAVNTLV 214

Query: 150  209
           
Sbjct: 254  214

Query: 210  269
           
Sbjct: 314  214

Query: 270  273
           
Sbjct: 374  214

[Close]

BLAST of CU093923 vs. NCBI nr
Match: gi|659116196|ref|XP_008457956.1| (PREDICTED: WD repeat-containing protein 5-like [Cucumis melo])

HSP 1 Score: 164.1 bits (414), Expect = 2.0e-37
Identity = 76/81 (93.83%), Postives = 81/81 (100.00%), Query Frame = 3


Query: 30  TLPTLGDYIKCSMRPSNYVEGRRRRNLWIKHFDAISSLSLSEDQAFLYSASWDKTFKVWR 89
           TLPTLGDYIKCSM+PSNYVEGRRRR+LWIKHFDAISSLSLSEDQ+FLYSASWDKTFKVWR
Sbjct: 134 TLPTLGDYIKCSMKPSNYVEGRRRRSLWIKHFDAISSLSLSEDQSFLYSASWDKTFKVWR 193

Query: 90  VSDSKCLESIEAHEDAVNTLV 149
           VSDSKCLESI+AH+DAVNTLV
Sbjct: 194 VSDSKCLESIQAHDDAVNTLV 214

Query: 150  209
           
Sbjct: 254  214

Query: 210  269
           
Sbjct: 314  214

Query: 270  273
           
Sbjct: 374  214

[Close]

BLAST of CU093923 vs. NCBI nr
Match: gi|567866347|ref|XP_006425796.1| (hypothetical protein CICLE_v10027384mg [Citrus clementina])

HSP 1 Score: 138.7 bits (348), Expect = 8.8e-30
Identity = 65/82 (79.27%), Postives = 73/82 (89.02%), Query Frame = 3


Query: 30  TLPTLGDYIKCSMRPSNYVEGRRRRN-LWIKHFDAISSLSLSEDQAFLYSASWDKTFKVW 89
           TLPT  D+IKCSM+PSNY+E RRRRN LWIKHFDAISSLS+SEDQ  LYSASWDKTFKVW
Sbjct: 188 TLPTFKDFIKCSMKPSNYIEVRRRRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVW 247

Query: 90  RVSDSKCLESIEAHEDAVNTLV 149
           R SD KCLES+ AH+DAVN++V
Sbjct: 248 RTSDYKCLESVIAHDDAVNSIV 269

Query: 150  209
           
Sbjct: 308  269

Query: 210  269
           
Sbjct: 368  269

Query: 270  273
           
Sbjct: 428  269

[Close]

BLAST of CU093923 vs. NCBI nr
Match: gi|641860697|gb|KDO79386.1| (hypothetical protein CISIN_1g047728mg [Citrus sinensis])

HSP 1 Score: 136.7 bits (343), Expect = 3.4e-29
Identity = 64/82 (78.05%), Postives = 72/82 (87.80%), Query Frame = 3


Query: 30  TLPTLGDYIKCSMRPSNYVEGRRRRN-LWIKHFDAISSLSLSEDQAFLYSASWDKTFKVW 89
           TLPT  D+IKCSM+PSNY+E RR RN LWIKHFDAISSLS+SEDQ  LYSASWDKTFKVW
Sbjct: 188 TLPTFKDFIKCSMKPSNYIEVRRHRNGLWIKHFDAISSLSMSEDQNLLYSASWDKTFKVW 247

Query: 90  RVSDSKCLESIEAHEDAVNTLV 149
           R SD KCLES+ AH+DAVN++V
Sbjct: 248 RTSDYKCLESVIAHDDAVNSIV 269

Query: 150  209
           
Sbjct: 308  269

Query: 210  269
           
Sbjct: 368  269

Query: 270  273
           
Sbjct: 428  269

The following BLAST results are available for this feature:

BLAST of CU093923 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ12_CUCSA	3.3e-39	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G292220 PE=4 SV=1	[more]
A0A0A0LQ12_CUCSA	8.3e-27	98.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G292220 PE=4 SV=1	[more]
V4SPJ6_9ROSI	1.1e-21	81.97	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027384mg PE=4 SV=1	[more]
A0A067GVP2_CITSI	1.1e-21	81.97	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047728mg PE=4 SV=1	[more]
K7LNA2_SOYBN	7.5e-20	74.19	Uncharacterized protein OS=Glycine max GN=GLYMA_11G060400 PE=4 SV=1	[more]

BLAST of CU093923 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206922\|gb\|KGN62041.1\|	2.1e-39	100.00	hypothetical protein Csa_2G292220 [Cucumis sativus]	[more]
gi\|778674206\|ref\|XP_004148066.2\|	2.1e-39	100.00	PREDICTED: WD repeat-containing protein 5B [Cucumis sativus]	[more]
gi\|659116196\|ref\|XP_008457956.1\|	2.0e-37	93.83	PREDICTED: WD repeat-containing protein 5-like [Cucumis melo]	[more]
gi\|567866347\|ref\|XP_006425796.1\|	8.8e-30	79.27	hypothetical protein CICLE_v10027384mg [Citrus clementina]	[more]
gi\|641860697\|gb\|KDO79386.1\|	3.4e-29	78.05	hypothetical protein CISIN_1g047728mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa2G292220	Csa2G292220	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0141370	G0141370	EST
H0158537	H0158537	EST
H0173160	H0173160	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 125..155 score: 0.1coord: 75..110 score: 0.027coord: 41..69 score: 2.
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 73..111 score: 2.0E-4coord: 120..154 score: 290.0coord: 32..70 score: 0
IPR001680	WD40 repeat	PROFILE	PS50082	WD_REPEATS_2	coord: 80..110 score: 8.971coord: 38..79 score: 11
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	G3DSA:2.130.10.10		coord: 37..155 score: 1.0
IPR017986	WD40-repeat-containing domain	PROFILE	PS50294	WD_REPEATS_REGION	coord: 38..156 score: 18
IPR017986	WD40-repeat-containing domain	unknown	SSF50978	WD40 repeat-like	coord: 35..155 score: 4.46
None	No IPR available	PANTHER	PTHR22844	F-BOX AND WD40 DOMAIN PROTEIN	coord: 38..155 score: 3.7
None	No IPR available	PANTHER	PTHR22844:SF145	SUBFAMILY NOT NAMED	coord: 38..155 score: 3.7