CU093797 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU093797
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Serine/threonine protein kinase
Location	Chr5 : 1656019 .. 1660684 (+)
Sequence length	685

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ATCCCACCATGCCTGCATCTTTACCTTCATTTTTGGGTATTCATGAGCTTAGCACATTGAAGAGTGAAACTGTCAGCCGGAAATCATTTGCTCTGCAGGACAAGCTCTGGTCCATTTATGCAGCGGGTAATACTGTGCCCATTCCGTTCTTGAGGGCTACTGACATATCCCCCATTGCTTTGTTATCTGACAACGTCCTTGGAGGTGTGCAGCATGACAATAGGGGTACTGTAGCTGTGGAAACGCTTCAGGAACTTTTCACCGGTGATGGACAATCAAAAAAGGGTCGTAGGGGACAAAATGAGATGCCTCTTCCACCCAGTGTTTATCAAAGACTTACTTCAAGTCCAACACTATTGAACCTTGCCCAGGCTTTAGCTTACCACAGAATGTGTTACGAAGATATGCCACTTCAAGAGTTGCAGGCAACTCAAGAACAACAAACCATTCAAAATCTTTGTGATACTCTGAGAACTATCCTCCGATTGTAGATAATAATCTTTCTTCTGCCGTACTCGTTGTTTTTCTTCCCTTTTCTTTCTTTTCATTTTATCACACTTCCTTCCAAATGTAAGAAAATCACTATTTTCCCCCTCCCCATTATATTTTTTCCTGAAGTTAGTTGAGTGATTATTGTTGCTTGTCTTTGTGCCATTGTTCATTCTTTTAATTTTGATTTTTGGGT

Library


Library category	ESTs
Cucumber fruit library	1
fruit (8DPP) library	1
gynoecious flower library	1
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU093797 vs. TrEMBL
Match: A0A0A0KLC6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G051040 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 7.3e-72
Identity = 140/154 (90.91%), Postives = 140/154 (90.91%), Query Frame = 3


Query: 3   PTMPASLPSFLGIHELSTLKSETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIAL 62
           PTMPASLPSFLGIHELSTLKSETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIAL
Sbjct: 227 PTMPASLPSFLGIHELSTLKSETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIAL 286

Query: 63  LSDNVLGGVQHDNRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLN 122
           LSDNVLGGVQHDNRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLN
Sbjct: 287 LSDNVLGGVQHDNRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLN 346

Query: 123 LAQALAYHRMCYEDMPXXXXXXXXXXXXXXNLCD 182
           LAQALAYHRMCYEDMP              NLCD
Sbjct: 347 LAQALAYHRMCYEDMPLQELQATQEQQTIQNLCD 380

Query: 183  242
           
Sbjct: 407  380

Query: 243  302
           
Sbjct: 467  380

Query: 303  362
           
Sbjct: 527  380

Query: 363  422
           
Sbjct: 587  380

Query: 423  465
           
Sbjct: 647  380

[Close]

BLAST of CU093797 vs. TrEMBL
Match: A0A067GPZ0_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0040881mg PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 4.3e-56
Identity = 112/137 (81.75%), Postives = 119/137 (86.86%), Query Frame = 3


Query: 54  TLKSETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGVQHDNRGTV 113
           TLKSETVS+K+FALQDKLWSIYAAGNTVPIP LRATDISPIALLSDNVLG +QHDN+GTV
Sbjct: 295 TLKSETVSKKAFALQDKLWSIYAAGNTVPIPILRATDISPIALLSDNVLGAMQHDNKGTV 354

Query: 114 AVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNLAQALAYHRMCYEDMPX 173
           AVE LQELFTGDGQSKKGRRGQNE+PLPPSVYQRLTSS TLLNLAQALAYHRMCY++MP 
Sbjct: 355 AVEALQELFTGDGQSKKGRRGQNEIPLPPSVYQRLTSSSTLLNLAQALAYHRMCYDEMPL 414

Query: 174 XXXXXXXXXXXXXNLCD 233
                        NLCD
Sbjct: 415 QELQVTQEEQTIQNLCD 431

Query: 234  293
           
Sbjct: 475  431

Query: 294  353
           
Sbjct: 535  431

Query: 354  413
           
Sbjct: 595  431

Query: 414  465
           
Sbjct: 655  431

[Close]

BLAST of CU093797 vs. TrEMBL
Match: V4TN08_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030733mg PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.6e-55
Identity = 111/136 (81.62%), Postives = 118/136 (86.76%), Query Frame = 3


Query: 57  LKSETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGVQHDNRGTVA 116
           LKSETVS+K+FALQDKLWSIYAAGNTVPIP LRATDISPIALLSDNVLG +QHDN+GTVA
Sbjct: 659 LKSETVSKKAFALQDKLWSIYAAGNTVPIPILRATDISPIALLSDNVLGAMQHDNKGTVA 718

Query: 117 VETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNLAQALAYHRMCYEDMPXX 176
           VE LQELFTGDGQSKKGRRGQNE+PLPPSVYQRLTSS TLLNLAQALAYHRMCY++MP  
Sbjct: 719 VEALQELFTGDGQSKKGRRGQNEIPLPPSVYQRLTSSSTLLNLAQALAYHRMCYDEMPLQ 778

Query: 177 XXXXXXXXXXXXNLCD 236
                       NLCD
Sbjct: 779 ELQVTQEEQTIQNLCD 794

Query: 237  296
           
Sbjct: 839  794

Query: 297  356
           
Sbjct: 899  794

Query: 357  416
           
Sbjct: 959  794

Query: 417  465
           
Sbjct: 1019  794

[Close]

BLAST of CU093797 vs. TrEMBL
Match: B9HXI5_POPTR (Serine/threonine protein kinase OS=Populus trichocarpa GN=POPTR_0010s16490g PE=4 SV=2)

HSP 1 Score: 218.4 bits (555), Expect = 9.0e-54
Identity = 110/138 (79.71%), Postives = 116/138 (84.06%), Query Frame = 3


Query: 51  STLKSETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGVQHDNRGT 110
           STLK+ETVSRK+FALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGG+Q DN GT
Sbjct: 662 STLKNETVSRKAFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGIQCDNSGT 721

Query: 111 VAVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNLAQALAYHRMCYEDMP 170
           VA E LQELF+GDG SKKGRR QNEMPLPP VYQRLTSS TLLNLAQALAYH+MCYE+MP
Sbjct: 722 VAAEALQELFSGDGPSKKGRRIQNEMPLPPGVYQRLTSSSTLLNLAQALAYHKMCYEEMP 781

Query: 171 XXXXXXXXXXXXXXNLCD 230
                         NLCD
Sbjct: 782 LQELQATQEKQTIQNLCD 799

Query: 231  290
           
Sbjct: 842  799

Query: 291  350
           
Sbjct: 902  799

Query: 351  410
           
Sbjct: 962  799

Query: 411  465
           
Sbjct: 1022  799

[Close]

BLAST of CU093797 vs. TrEMBL
Match: M5XKN6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001486mg PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 9.0e-54
Identity = 107/137 (78.10%), Postives = 117/137 (85.40%), Query Frame = 3


Query: 54  TLKSETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGVQHDNRGTV 113
           TLK+ETV+RK+FA+QDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGG+  DN G+V
Sbjct: 671 TLKNETVNRKAFAMQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGMHEDNNGSV 730

Query: 114 AVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNLAQALAYHRMCYEDMPX 173
           AVE LQELFTGDGQSKKGRRGQNEMPLPPSVY+RL +S TL+NLAQALAYH+MCYEDMP 
Sbjct: 731 AVEALQELFTGDGQSKKGRRGQNEMPLPPSVYKRLFTSSTLMNLAQALAYHKMCYEDMPL 790

Query: 174 XXXXXXXXXXXXXNLCD 233
                        NLCD
Sbjct: 791 QELQATQEQQTIQNLCD 807

Query: 234  293
           
Sbjct: 851  807

Query: 294  353
           
Sbjct: 911  807

Query: 354  413
           
Sbjct: 971  807

Query: 414  465
           
Sbjct: 1031  807

[Close]

BLAST of CU093797 vs. NCBI nr
Match: gi|449449072|ref|XP_004142289.1| (PREDICTED: spindle assembly checkpoint kinase isoform X1 [Cucumis sativus])

HSP 1 Score: 278.5 bits (711), Expect = 1.1e-71
Identity = 140/154 (90.91%), Postives = 140/154 (90.91%), Query Frame = 3


Query: 3   PTMPASLPSFLGIHELSTLKSETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIAL 62
           PTMPASLPSFLGIHELSTLKSETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIAL
Sbjct: 668 PTMPASLPSFLGIHELSTLKSETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIAL 727

Query: 63  LSDNVLGGVQHDNRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLN 122
           LSDNVLGGVQHDNRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLN
Sbjct: 728 LSDNVLGGVQHDNRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLN 787

Query: 123 LAQALAYHRMCYEDMPXXXXXXXXXXXXXXNLCD 182
           LAQALAYHRMCYEDMP              NLCD
Sbjct: 788 LAQALAYHRMCYEDMPLQELQATQEQQTIQNLCD 821

Query: 183  242
           
Sbjct: 848  821

Query: 243  302
           
Sbjct: 908  821

Query: 303  362
           
Sbjct: 968  821

Query: 363  422
           
Sbjct: 1028  821

Query: 423  465
           
Sbjct: 1088  821

[Close]

BLAST of CU093797 vs. NCBI nr
Match: gi|700194482|gb|KGN49659.1| (hypothetical protein Csa_5G051040 [Cucumis sativus])

HSP 1 Score: 278.5 bits (711), Expect = 1.1e-71
Identity = 140/154 (90.91%), Postives = 140/154 (90.91%), Query Frame = 3


Query: 3   PTMPASLPSFLGIHELSTLKSETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIAL 62
           PTMPASLPSFLGIHELSTLKSETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIAL
Sbjct: 227 PTMPASLPSFLGIHELSTLKSETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIAL 286

Query: 63  LSDNVLGGVQHDNRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLN 122
           LSDNVLGGVQHDNRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLN
Sbjct: 287 LSDNVLGGVQHDNRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLN 346

Query: 123 LAQALAYHRMCYEDMPXXXXXXXXXXXXXXNLCD 182
           LAQALAYHRMCYEDMP              NLCD
Sbjct: 347 LAQALAYHRMCYEDMPLQELQATQEQQTIQNLCD 380

Query: 183  242
           
Sbjct: 407  380

Query: 243  302
           
Sbjct: 467  380

Query: 303  362
           
Sbjct: 527  380

Query: 363  422
           
Sbjct: 587  380

Query: 423  465
           
Sbjct: 647  380

[Close]

BLAST of CU093797 vs. NCBI nr
Match: gi|659098619|ref|XP_008450231.1| (PREDICTED: serine/threonine-protein kinase A-Raf isoform X2 [Cucumis melo])

HSP 1 Score: 273.5 bits (698), Expect = 3.4e-70
Identity = 137/153 (89.54%), Postives = 139/153 (90.85%), Query Frame = 3


Query: 6   TMPASLPSFLGIHELSTLKSETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALL 65
           T+PAS+PSFLGIHELSTLKSETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALL
Sbjct: 666 TVPASIPSFLGIHELSTLKSETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALL 725

Query: 66  SDNVLGGVQHDNRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNL 125
           SDNVLGGVQHDNRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNL
Sbjct: 726 SDNVLGGVQHDNRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNL 785

Query: 126 AQALAYHRMCYEDMPXXXXXXXXXXXXXXNLCD 185
           AQALAYHRMCYEDMP              NLCD
Sbjct: 786 AQALAYHRMCYEDMPLQELQATQEQQTIQNLCD 818

Query: 186  245
           
Sbjct: 846  818

Query: 246  305
           
Sbjct: 906  818

Query: 306  365
           
Sbjct: 966  818

Query: 366  425
           
Sbjct: 1026  818

Query: 426  465
           
Sbjct: 1086  818

[Close]

BLAST of CU093797 vs. NCBI nr
Match: gi|659098617|ref|XP_008450230.1| (PREDICTED: serine/threonine-protein kinase A-Raf isoform X1 [Cucumis melo])

HSP 1 Score: 273.5 bits (698), Expect = 3.4e-70
Identity = 137/153 (89.54%), Postives = 139/153 (90.85%), Query Frame = 3


Query: 6   TMPASLPSFLGIHELSTLKSETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALL 65
           T+PAS+PSFLGIHELSTLKSETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALL
Sbjct: 677 TVPASIPSFLGIHELSTLKSETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALL 736

Query: 66  SDNVLGGVQHDNRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNL 125
           SDNVLGGVQHDNRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNL
Sbjct: 737 SDNVLGGVQHDNRGTVAVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNL 796

Query: 126 AQALAYHRMCYEDMPXXXXXXXXXXXXXXNLCD 185
           AQALAYHRMCYEDMP              NLCD
Sbjct: 797 AQALAYHRMCYEDMPLQELQATQEQQTIQNLCD 829

Query: 186  245
           
Sbjct: 857  829

Query: 246  305
           
Sbjct: 917  829

Query: 306  365
           
Sbjct: 977  829

Query: 366  425
           
Sbjct: 1037  829

Query: 426  465
           
Sbjct: 1097  829

[Close]

BLAST of CU093797 vs. NCBI nr
Match: gi|641863102|gb|KDO81788.1| (hypothetical protein CISIN_1g0040881mg, partial [Citrus sinensis])

HSP 1 Score: 226.5 bits (576), Expect = 4.7e-56
Identity = 112/137 (81.75%), Postives = 119/137 (86.86%), Query Frame = 3


Query: 54  TLKSETVSRKSFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGVQHDNRGTV 113
           TLKSETVS+K+FALQDKLWSIYAAGNTVPIP LRATDISPIALLSDNVLG +QHDN+GTV
Sbjct: 295 TLKSETVSKKAFALQDKLWSIYAAGNTVPIPILRATDISPIALLSDNVLGAMQHDNKGTV 354

Query: 114 AVETLQELFTGDGQSKKGRRGQNEMPLPPSVYQRLTSSPTLLNLAQALAYHRMCYEDMPX 173
           AVE LQELFTGDGQSKKGRRGQNE+PLPPSVYQRLTSS TLLNLAQALAYHRMCY++MP 
Sbjct: 355 AVEALQELFTGDGQSKKGRRGQNEIPLPPSVYQRLTSSSTLLNLAQALAYHRMCYDEMPL 414

Query: 174 XXXXXXXXXXXXXNLCD 233
                        NLCD
Sbjct: 415 QELQVTQEEQTIQNLCD 431

Query: 234  293
           
Sbjct: 475  431

Query: 294  353
           
Sbjct: 535  431

Query: 354  413
           
Sbjct: 595  431

Query: 414  465
           
Sbjct: 655  431

The following BLAST results are available for this feature:

BLAST of CU093797 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLC6_CUCSA	7.3e-72	90.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G051040 PE=4 SV=1	[more]
A0A067GPZ0_CITSI	4.3e-56	81.75	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0040881mg PE=4 ...	[more]
V4TN08_9ROSI	1.6e-55	81.62	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030733mg PE=4 SV=1	[more]
B9HXI5_POPTR	9.0e-54	79.71	Serine/threonine protein kinase OS=Populus trichocarpa GN=POPTR_0010s16490g PE=4...	[more]
M5XKN6_PRUPE	9.0e-54	78.10	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001486mg PE=4 SV=1	[more]

BLAST of CU093797 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449449072\|ref\|XP_004142289.1\|	1.1e-71	90.91	PREDICTED: spindle assembly checkpoint kinase isoform X1 [Cucumis sativus]	[more]
gi\|700194482\|gb\|KGN49659.1\|	1.1e-71	90.91	hypothetical protein Csa_5G051040 [Cucumis sativus]	[more]
gi\|659098619\|ref\|XP_008450231.1\|	3.4e-70	89.54	PREDICTED: serine/threonine-protein kinase A-Raf isoform X2 [Cucumis melo]	[more]
gi\|659098617\|ref\|XP_008450230.1\|	3.4e-70	89.54	PREDICTED: serine/threonine-protein kinase A-Raf isoform X1 [Cucumis melo]	[more]
gi\|641863102\|gb\|KDO81788.1\|	4.7e-56	81.75	hypothetical protein CISIN_1g0040881mg, partial [Citrus sinensis]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa5G051040	Csa5G051040	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
Cuc5_4_B10	Cuc5_4_B10	EST
FKNP3UI02N7J3N	FKNP3UI02N7J3N	EST
G0041810	G0041810	EST
H0155841	H0155841	EST