CU091911 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU091911
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr5 : 4412927 .. 4413380 (-)
Sequence length	457

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GCGTCAAGCTCTGCTACCGTGTGGAAACTCGAGCTCTTACGTGGGGGGTTGTTTAGCAACTACAACGGCGGGGAGTTGCGGCGGTGACAGCAAGGGGATTTGTCGGGGGTGGGTTCTGTAACAGAGCGGAGAGCAGGTTTAAGGTCTTCAAGGGCTTTACTAACCTCATCCCATGAATGAGGAGCTTCCGACTCGAAACTACTAAGCTTCTCCAAAATCGGAACCGGAACAATAGCCGATTTCTCCTCCTTCACAGGAGGCTCCTCAGGTGGTGGCGGTAACTCCTCCATGACTTTAACCCAAGGTTCCTCTATGGCGTTTATGTCAAAAACCGCAAAGCTGGCTGGCGCCGGACGGTACACGTCGACGGTGGCCTCAATTCGCTTGGAAGAGGTGCACCCCATTGCCGTCGATGAAGTTCCGGCGGTTGAGTATAGGATTTTTTTAAAAAAGAATC

Library


Library category	ESTs
gynoecious flower library	2
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU091911 vs. TrEMBL
Match: A0A0A0KQR0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G148770 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 5.6e-36
Identity = 88/134 (65.67%), Postives = 89/134 (66.42%), Query Frame = -3


Query: 3   MGCTSSKRIEATVDVYRPAPASFAVFDINAIEEPWXXXXXXXXXXXXXXXXXXXXSAIVP 62
           MGCTSSKRIEATVDVYRPAPASFAVFDINAIEEPW                    SAIVP
Sbjct: 1   MGCTSSKRIEATVDVYRPAPASFAVFDINAIEEPWVKVMEELPPPPEEPPVKEEKSAIVP 60

Query: 63  VPILEKLSSFESEAPHSWDEVSKALEDLKPALRSVTEPTPDKSPCCHXXXXXXXXXXXXX 122
           VPILEKLSSFESEAPHSWDEVSKALEDLKPALRSVTEP P  +P                
Sbjct: 61  VPILEKLSSFESEAPHSWDEVSKALEDLKPALRSVTEP-PPTNPLAVTAATPAVVVAKQP 120

Query: 123 XXXXXXFHTVAELD 182
                 FHTVAELD
Sbjct: 121 PRKSSSFHTVAELD 133

Query: 183  242
           
Sbjct: 181  133

Query: 243  302
           
Sbjct: 241  133

Query: 303  362
           
Sbjct: 301  133

Query: 363  405
           
Sbjct: 361  133

[Close]

BLAST of CU091911 vs. TrEMBL
Match: B9GXS3_POPTR (Glutaredoxin family protein OS=Populus trichocarpa GN=POPTR_0003s14170g PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.7e-22
Identity = 58/107 (54.21%), Postives = 71/107 (66.36%), Query Frame = -3


Query: 93  MGCTSSKRIEATVDVYRPAPASFAVFDINAIEEPWXXXXXXXXXXXXXXXXXXXXSAIVP 152
           MGC SSKRIEA VDVYRP P+SFAVFDIN+I+EPW                    ++ VP
Sbjct: 1   MGCNSSKRIEANVDVYRPPPSSFAVFDINSIQEPW----------LVVDNSAPEKTSSVP 60

Query: 153 VPILEKLSSFESEAPHSWDEVSKALEDLKPALRS---VTEPTPDKSP 212
            PILEKL+ FE++AP SWDEVSKAL+DLKP L +   +  P+P + P
Sbjct: 61  APILEKLNKFETDAPRSWDEVSKALQDLKPTLNNKTPIATPSPPQKP 97

Query: 213  272
           
Sbjct: 121  97

Query: 273  332
           
Sbjct: 181  97

Query: 333  392
           
Sbjct: 241  97

Query: 393  405
           
Sbjct: 301  97

[Close]

BLAST of CU091911 vs. TrEMBL
Match: V4TRM2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020737mg PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.0e-21
Identity = 61/108 (56.48%), Postives = 69/108 (63.89%), Query Frame = -3


Query: 99  MGCTSSKRIEATVDVYRPAPASFAVFDINAIEEPWXXXXXXXXXXXXXXXXXXXXSAIVP 158
           MGC SSKRIEATVD+YRPAPASFAVFDINA++EPW                     A VP
Sbjct: 1   MGCASSKRIEATVDIYRPAPASFAVFDINAVQEPW-----RTSDNNNTSQEQQEKPAHVP 60

Query: 159 VPILEKLSSFESEAP--HSWDEVSKALEDLKPALR----SVTEPTPDK 218
            PILEKL+ FE++AP  HSWDEVSK L+DLKP +     S   PT  K
Sbjct: 61  APILEKLNKFETDAPHSHSWDEVSKVLQDLKPRISSNSVSAASPTTQK 103

Query: 219  278
           
Sbjct: 121  103

Query: 279  338
           
Sbjct: 181  103

Query: 339  398
           
Sbjct: 241  103

Query: 399  405
           
Sbjct: 301  103

[Close]

BLAST of CU091911 vs. TrEMBL
Match: A5B3J3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032100 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 8.7e-21
Identity = 68/138 (49.28%), Postives = 74/138 (53.62%), Query Frame = -3


Query: 3   MGCTSSKRIEATVDVYRPAPASFAVFDINAIEEPWXXXXXXXXXXXXXXXXXXXXSAIVP 62
           MGC+SSKRIEATVDVYRPAPASFAVFDIN IEEPW                       +P
Sbjct: 1   MGCSSSKRIEATVDVYRPAPASFAVFDINTIEEPWLKVDHAPEHHQEKPTH-------LP 60

Query: 63  VPILEKLSSFESEAPHSWDEVSKALEDLKPALRS----VTEPTPDKSPCCHXXXXXXXXX 122
             ILEKL++ E E P SWDEVS+ALEDLKP L S    VT+      P            
Sbjct: 61  PLILEKLNALE-EGPRSWDEVSRALEDLKPTLHSPAPAVTDADKPPQPQPQPPAQDSPTL 120

Query: 123 XXXXXXXXXXFHTVAELD 182
                     FHTVAELD
Sbjct: 121 KPQATRKSLSFHTVAELD 130

Query: 183  242
           
Sbjct: 181  130

Query: 243  302
           
Sbjct: 241  130

Query: 303  362
           
Sbjct: 301  130

Query: 363  405
           
Sbjct: 361  130

[Close]

BLAST of CU091911 vs. TrEMBL
Match: F6HU33_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g01710 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 8.7e-21
Identity = 68/138 (49.28%), Postives = 74/138 (53.62%), Query Frame = -3


Query: 3   MGCTSSKRIEATVDVYRPAPASFAVFDINAIEEPWXXXXXXXXXXXXXXXXXXXXSAIVP 62
           MGC+SSKRIEATVDVYRPAPASFAVFDIN IEEPW                       +P
Sbjct: 1   MGCSSSKRIEATVDVYRPAPASFAVFDINTIEEPWLKVDHAPEHHQEKPTH-------LP 60

Query: 63  VPILEKLSSFESEAPHSWDEVSKALEDLKPALRS----VTEPTPDKSPCCHXXXXXXXXX 122
             ILEKL++ E E P SWDEVS+ALEDLKP L S    VT+      P            
Sbjct: 61  PLILEKLNALE-EGPRSWDEVSRALEDLKPTLHSPAPAVTDADKPPQPQPQPPAQDSPTL 120

Query: 123 XXXXXXXXXXFHTVAELD 182
                     FHTVAELD
Sbjct: 121 KPQATRKSLSFHTVAELD 130

Query: 183  242
           
Sbjct: 181  130

Query: 243  302
           
Sbjct: 241  130

Query: 303  362
           
Sbjct: 301  130

Query: 363  405
           
Sbjct: 361  130

[Close]

BLAST of CU091911 vs. NCBI nr
Match: gi|449452408|ref|XP_004143951.1| (PREDICTED: uncharacterized protein LOC101208965 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 1.1e-35
Identity = 88/134 (65.67%), Postives = 89/134 (66.42%), Query Frame = -3


Query: 3   MGCTSSKRIEATVDVYRPAPASFAVFDINAIEEPWXXXXXXXXXXXXXXXXXXXXSAIVP 62
           MGCTSSKRIEATVDVYRPAPASFAVFDINAIEEPW                    SAIVP
Sbjct: 1   MGCTSSKRIEATVDVYRPAPASFAVFDINAIEEPWVKVMEELPPPPEEPPVKEEKSAIVP 60

Query: 63  VPILEKLSSFESEAPHSWDEVSKALEDLKPALRSVTEPTPDKSPCCHXXXXXXXXXXXXX 122
           VPILEKLSSFESEAPHSWDEVSKALEDLKPALRSVTEP P  +P                
Sbjct: 61  VPILEKLSSFESEAPHSWDEVSKALEDLKPALRSVTEP-PPTNPLAVTAATPAVVVAKQP 120

Query: 123 XXXXXXFHTVAELD 182
                 FHTVAELD
Sbjct: 121 PRKSSSFHTVAELD 133

Query: 183  242
           
Sbjct: 181  133

Query: 243  302
           
Sbjct: 241  133

Query: 303  362
           
Sbjct: 301  133

Query: 363  405
           
Sbjct: 361  133

[Close]

BLAST of CU091911 vs. NCBI nr
Match: gi|659074080|ref|XP_008437411.1| (PREDICTED: uncharacterized protein LOC103482835 [Cucumis melo])

HSP 1 Score: 156.4 bits (394), Expect = 4.0e-35
Identity = 87/134 (64.93%), Postives = 87/134 (64.93%), Query Frame = -3


Query: 3   MGCTSSKRIEATVDVYRPAPASFAVFDINAIEEPWXXXXXXXXXXXXXXXXXXXXSAIVP 62
           MGCTSSKRIEATVDVYRPAPASFAVFDINAIEEPW                    SAIVP
Sbjct: 1   MGCTSSKRIEATVDVYRPAPASFAVFDINAIEEPWVKVMEELPPPPEEPPVKEEKSAIVP 60

Query: 63  VPILEKLSSFESEAPHSWDEVSKALEDLKPALRSVTEPTPDKSPCCHXXXXXXXXXXXXX 122
           VPILEKLSSFESEAPHSWDEVSKALEDLKPALR VTEP P   P                
Sbjct: 61  VPILEKLSSFESEAPHSWDEVSKALEDLKPALRPVTEPPPTNPPTV-AAATPAVVVTKQS 120

Query: 123 XXXXXXFHTVAELD 182
                 FHTVAELD
Sbjct: 121 PRKSSSFHTVAELD 133

Query: 183  242
           
Sbjct: 181  133

Query: 243  302
           
Sbjct: 241  133

Query: 303  362
           
Sbjct: 301  133

Query: 363  405
           
Sbjct: 361  133

[Close]

BLAST of CU091911 vs. NCBI nr
Match: gi|224072222|ref|XP_002303660.1| (glutaredoxin family protein [Populus trichocarpa])

HSP 1 Score: 112.8 bits (281), Expect = 5.1e-22
Identity = 58/107 (54.21%), Postives = 71/107 (66.36%), Query Frame = -3


Query: 93  MGCTSSKRIEATVDVYRPAPASFAVFDINAIEEPWXXXXXXXXXXXXXXXXXXXXSAIVP 152
           MGC SSKRIEA VDVYRP P+SFAVFDIN+I+EPW                    ++ VP
Sbjct: 1   MGCNSSKRIEANVDVYRPPPSSFAVFDINSIQEPW----------LVVDNSAPEKTSSVP 60

Query: 153 VPILEKLSSFESEAPHSWDEVSKALEDLKPALRS---VTEPTPDKSP 212
            PILEKL+ FE++AP SWDEVSKAL+DLKP L +   +  P+P + P
Sbjct: 61  APILEKLNKFETDAPRSWDEVSKALQDLKPTLNNKTPIATPSPPQKP 97

Query: 213  272
           
Sbjct: 121  97

Query: 273  332
           
Sbjct: 181  97

Query: 333  392
           
Sbjct: 241  97

Query: 393  405
           
Sbjct: 301  97

[Close]

BLAST of CU091911 vs. NCBI nr
Match: gi|743825286|ref|XP_011022479.1| (PREDICTED: glutaredoxin domain-containing cysteine-rich protein CG12206-like [Populus euphratica])

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 57/107 (53.27%), Postives = 71/107 (66.36%), Query Frame = -3


Query: 93  MGCTSSKRIEATVDVYRPAPASFAVFDINAIEEPWXXXXXXXXXXXXXXXXXXXXSAIVP 152
           MGC SSKRI+A VDVYRP P+ FAVFDIN+I+EPW                    ++ VP
Sbjct: 1   MGCNSSKRIQANVDVYRPPPSGFAVFDINSIQEPW----------LVVDNSAPEKTSSVP 60

Query: 153 VPILEKLSSFESEAPHSWDEVSKALEDLKPALRS---VTEPTPDKSP 212
            PILEKL+ FE++AP SWDEVSKAL+DLKPAL +   +  P+P + P
Sbjct: 61  APILEKLNKFETDAPRSWDEVSKALQDLKPALNNKTPIATPSPPQKP 97

Query: 213  272
           
Sbjct: 121  97

Query: 273  332
           
Sbjct: 181  97

Query: 333  392
           
Sbjct: 241  97

Query: 393  405
           
Sbjct: 301  97

[Close]

BLAST of CU091911 vs. NCBI nr
Match: gi|567893646|ref|XP_006439311.1| (hypothetical protein CICLE_v10020737mg [Citrus clementina])

HSP 1 Score: 110.9 bits (276), Expect = 1.9e-21
Identity = 61/108 (56.48%), Postives = 69/108 (63.89%), Query Frame = -3


Query: 99  MGCTSSKRIEATVDVYRPAPASFAVFDINAIEEPWXXXXXXXXXXXXXXXXXXXXSAIVP 158
           MGC SSKRIEATVD+YRPAPASFAVFDINA++EPW                     A VP
Sbjct: 1   MGCASSKRIEATVDIYRPAPASFAVFDINAVQEPW-----RTSDNNNTSQEQQEKPAHVP 60

Query: 159 VPILEKLSSFESEAP--HSWDEVSKALEDLKPALR----SVTEPTPDK 218
            PILEKL+ FE++AP  HSWDEVSK L+DLKP +     S   PT  K
Sbjct: 61  APILEKLNKFETDAPHSHSWDEVSKVLQDLKPRISSNSVSAASPTTQK 103

Query: 219  278
           
Sbjct: 121  103

Query: 279  338
           
Sbjct: 181  103

Query: 339  398
           
Sbjct: 241  103

Query: 399  405
           
Sbjct: 301  103

The following BLAST results are available for this feature:

BLAST of CU091911 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQR0_CUCSA	5.6e-36	65.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G148770 PE=4 SV=1	[more]
B9GXS3_POPTR	2.7e-22	54.21	Glutaredoxin family protein OS=Populus trichocarpa GN=POPTR_0003s14170g PE=4 SV=...	[more]
V4TRM2_9ROSI	1.0e-21	56.48	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020737mg PE=4 SV=1	[more]
A5B3J3_VITVI	8.7e-21	49.28	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032100 PE=4 SV=1	[more]
F6HU33_VITVI	8.7e-21	49.28	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g01710 PE=4 SV=...	[more]

BLAST of CU091911 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449452408\|ref\|XP_004143951.1\|	1.1e-35	65.67	PREDICTED: uncharacterized protein LOC101208965 [Cucumis sativus]	[more]
gi\|659074080\|ref\|XP_008437411.1\|	4.0e-35	64.93	PREDICTED: uncharacterized protein LOC103482835 [Cucumis melo]	[more]
gi\|224072222\|ref\|XP_002303660.1\|	5.1e-22	54.21	glutaredoxin family protein [Populus trichocarpa]	[more]
gi\|743825286\|ref\|XP_011022479.1\|	1.1e-21	53.27	PREDICTED: glutaredoxin domain-containing cysteine-rich protein CG12206-like [Po...	[more]
gi\|567893646\|ref\|XP_006439311.1\|	1.9e-21	56.48	hypothetical protein CICLE_v10020737mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa5G148770	Csa5G148770	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0062967	G0062967	EST
G0199942	G0199942	EST
H0169467	H0169467	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10168	GLUTAREDOXIN	coord: 2..104 score: 4.1
None	No IPR available	PANTHER	PTHR10168:SF61	F1N19.7	coord: 2..104 score: 4.1