CU091126 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU091126
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Pentatricopeptide repeat-containing protein, putative
Location	Chr6 : 5819953 .. 5820238 (-)
Sequence length	287

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GAGGCATGTGAAATTTTGCTCGATTTTTCGAGGGAAGCAAGTATTGCCCAAGGATTACGATTACTATGGCGTTGTTGAAATGCTTTGTGGCAAAGGGAATGCAGGCAAAGCCATGGAAGTTGTTGACGAGTTGTGGATGGAAGGAAATGTTCCCCAGCTTCATTACTTCCACCACTTTGATAGATGGACTGAGGAAAGAGGGGAGAGTGAATGATGCAATGAATGTAACAGAGAGAATGCTTGAAGTAGGTATGATTCCCGACAGTGTGACTTTTAACTCCCTTCTT

Library


Library category	ESTs
gynoecious flower library	1
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU091126 vs. Swiss-Prot
Match: PP187_ARATH (Pentatricopeptide repeat-containing protein At2g36240 OS=Arabidopsis thaliana GN=At2g36240 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.7e-07
Identity = 27/51 (52.94%), Postives = 32/51 (62.75%), Query Frame = 3


Query: 138 WKE-MFPSFITSTTLIDGLRKEGRVNDAMNVTERMLEVGMIPDSVTFNSLL 197
           WK+   P FI  TTL++GLRK GR   A    E+M+  G++PDSVTFN LL
Sbjct: 360 WKKGQTPCFIACTTLVEGLRKSGRTEKASGFMEKMMNAGILPDSVTFNLLL 410

Query: 198  257
           
Sbjct: 420  410

Query: 258  288
           
Sbjct: 480  410

HSP 2 Score: 50.4 bits (119), Expect = 1.2e-05
Identity = 20/40 (50.00%), Postives = 28/40 (70.00%), Query Frame = 2


Query: 35  KQVLPKDYDYYGVVEMLCGKGNAGKAMEVVDELWMEGNVP 94
           K+VLP ++DY  +VE LCG+  A +AME+++ELW +G  P
Sbjct: 327 KRVLPSEFDYGSLVEKLCGENKAVRAMEMMEELWKKGQTP 366

Query: 95   154
           
Sbjct: 387  366

HSP 3 Score: 32.3 bits (72), Expect = 3.4e+00
Identity = 15/41 (36.59%), Postives = 22/41 (53.66%), Query Frame = 3


Query: 165 TSTTLIDGLRKEGRVNDAMNVTERMLEVGMIPDSVTFNSLL 224
           T   L+DGL +EGRV+DA  +   +L   ++P    + SL+
Sbjct: 300 TCEILVDGLCREGRVDDACGLVLDLLNKRVLPSEFDYGSLV 340

Query: 225  284
           
Sbjct: 360  340

Query: 285  288
           
Sbjct: 420  340

[Close]

BLAST of CU091126 vs. TrEMBL
Match: A0A0A0KA47_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087810 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.8e-16
Identity = 50/87 (57.47%), Postives = 59/87 (67.82%), Query Frame = 3


Query: 27  FEGSKYCPRITITMALLKCFVAKGMQAKPWKLLTSCGWKEMFPSFITSTTLIDGLRKEGR 86
           F   +  P+      +++    KG   K  +++     +   PSFITSTTLIDGLRKEGR
Sbjct: 206 FSRKQVLPKDYDYYGVVEMLCGKGNAGKAMEVVDELWMEGNVPSFITSTTLIDGLRKEGR 265

Query: 87  VNDAMNVTERMLEVGMIPDSVTFNSLL 146
           VNDAMNVTERMLEVGMIPDSVTFNSLL
Sbjct: 266 VNDAMNVTERMLEVGMIPDSVTFNSLL 292

Query: 147  206
           
Sbjct: 326  292

Query: 207  266
           
Sbjct: 386  292

Query: 267  288
           
Sbjct: 446  292

[Close]

BLAST of CU091126 vs. TrEMBL
Match: W9R2G2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025847 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-07
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 2


Query: 2   RHVKFCSI---FRGKQVLPKDYDYYGVVEMLCGKGNAGKAMEVVDELWMEGNVPQL 61
           R ++ C I   F  K+VLP  YDY+G+VE+LC KGN+ +A+EVV+ELW  GN P L
Sbjct: 370 RVLEACEILIDFSRKRVLPDGYDYFGLVEILCRKGNSERALEVVNELWRRGNSPSL 425

Query: 62   121
           
Sbjct: 430  425

Query: 122  161
           
Sbjct: 490  425

[Close]

BLAST of CU091126 vs. TrEMBL
Match: W9R2G2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025847 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-06
Identity = 29/72 (40.28%), Postives = 46/72 (63.89%), Query Frame = 3


Query: 72  LLKCFVAKGMQAKPWKLLTSCGWKEMFPSFITSTTLIDGLRKEGRVNDAMNVTERMLEVG 131
           L++    KG   +  +++     +   PS I  TTLI+GLRK GR ++A  +TERM++ G
Sbjct: 396 LVEILCRKGNSERALEVVNELWRRGNSPSLIACTTLIEGLRKPGRSDEAFGLTERMIKEG 455

Query: 132 MIPDSVTFNSLL 191
           ++PD++TFN LL
Sbjct: 456 LVPDNLTFNCLL 467

Query: 192  251
           
Sbjct: 516  467

Query: 252  288
           
Sbjct: 576  467

HSP 2 Score: 39.3 bits (90), Expect = 3.1e+00
Identity = 21/69 (30.43%), Postives = 34/69 (49.28%), Query Frame = 3


Query: 81  CFVAKGMQAKPWKLLTSCGWKEMFPSFITSTTLIDGLRKEGRVNDAMNVTERMLEVGMIP 140
           C V + ++A   +LL S   K   P  +    L+ G  KEG   +   + + ML+ G IP
Sbjct: 471 CNVGRTVEADKLRLLASS--KGFVPDSMAYNILVSGYTKEGERKEGEKLVDEMLDKGFIP 530

Query: 141 DSVTFNSLL 200
           D  ++N L+
Sbjct: 531 DIASYNRLM 537

Query: 201  260
           
Sbjct: 591  537

Query: 261  288
           
Sbjct: 651  537

HSP 3 Score: 32.0 bits (71), Expect = 5.0e+02
Identity = 18/45 (40.00%), Postives = 23/45 (51.11%), Query Frame = 3


Query: 153 PSFITSTTLIDGLRKEGRVNDAMNVTERMLEVGMIPDSVTFNSLL 212
           PS +   TLI+G  K G  + A+    RM    + PD  TFN LL
Sbjct: 248 PSVVVCNTLINGFVKWGEHDKALEFYNRMSGYRVKPDVFTFNILL 292

Query: 213  272
           
Sbjct: 308  292

Query: 273  288
           
Sbjct: 368  292

HSP 4 Score: 62.4 bits (150), Expect = 3.5e-07
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 2


Query: 8   VKFCSIFRGKQVLPKDYDYYGVVEMLCGKGNAGKAMEVVDELWMEGNVP 67
           V FC     K +LPK +D  G+VE LCGKGNAG+A EVV+ELWM+G+VP
Sbjct: 315 VDFCR----KGLLPKGFDCCGLVEELCGKGNAGRAFEVVNELWMKGDVP 359

Query: 68   127
           
Sbjct: 375  359

Query: 128  155
           
Sbjct: 435  359

[Close]

BLAST of CU091126 vs. TrEMBL
Match: A0A0D2TZL0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G402600 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.1e-04
Identity = 26/72 (36.11%), Postives = 43/72 (59.72%), Query Frame = 3


Query: 72  LLKCFVAKGMQAKPWKLLTSCGWKEMFPSFITSTTLIDGLRKEGRVNDAMNVTERMLEVG 131
           L++    KG   + ++++     K   PS I  TTLI+GLR+  R  D+  + E+ML+ G
Sbjct: 332 LVEELCGKGNAGRAFEVVNELWMKGDVPSSIACTTLIEGLRRSQRREDSFGLMEKMLKDG 391

Query: 132 MIPDSVTFNSLL 191
           ++PD +TFN L+
Sbjct: 392 IVPDILTFNYLI 403

Query: 192  251
           
Sbjct: 452  403

Query: 252  288
           
Sbjct: 512  403

HSP 2 Score: 45.1 bits (105), Expect = 5.7e-02
Identity = 23/69 (33.33%), Postives = 38/69 (55.07%), Query Frame = 3


Query: 81  CFVAKGMQAKPWKLLTSCGWKEMFPSFITSTTLIDGLRKEGRVNDAMNVTERMLEVGMIP 140
           C + + M A  ++LL S   K + P  +T   L+ G  ++GR  +  N+ + ML+ G IP
Sbjct: 407 CDLGRTMDANKFRLLASA--KGLEPDEVTYNILVYGYTRDGRRKEGENLVDEMLDKGYIP 466

Query: 141 DSVTFNSLL 200
           D  T+N L+
Sbjct: 467 DIATYNRLM 473

Query: 201  260
           
Sbjct: 527  473

Query: 261  288
           
Sbjct: 587  473

HSP 3 Score: 32.7 bits (73), Expect = 2.9e+02
Identity = 16/45 (35.56%), Postives = 26/45 (57.78%), Query Frame = 3


Query: 153 PSFITSTTLIDGLRKEGRVNDAMNVTERMLEVGMIPDSVTFNSLL 212
           PS +    +I+G  K G  ++A+   ERM +  + PD  TFN+L+
Sbjct: 184 PSVVIYNVMINGYLKSGDFDNALRFYERMEKDRVKPDVCTFNTLI 228

Query: 213  272
           
Sbjct: 244  228

Query: 273  288
           
Sbjct: 304  228

HSP 4 Score: 62.0 bits (149), Expect = 4.5e-07
Identity = 24/45 (53.33%), Postives = 35/45 (77.78%), Query Frame = 2


Query: 26  FRGKQVLPKDYDYYGVVEMLCGKGNAGKAMEVVDELWMEGNVPQL 85
           F  K+VLP++YDY+G+VE LC  GN+ +A++VV +LW  GN+P L
Sbjct: 369 FSSKRVLPEEYDYFGLVEALCSSGNSHRALDVVTDLWKTGNIPSL 413

Query: 86   145
           
Sbjct: 429  413

Query: 146  161
           
Sbjct: 489  413

[Close]

BLAST of CU091126 vs. TrEMBL
Match: A0A059BBC4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00971 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.7e-04
Identity = 28/87 (32.18%), Postives = 45/87 (51.72%), Query Frame = 3


Query: 27  FEGSKYCPRITITMALLKCFVAKGMQAKPWKLLTSCGWKEMFPSFITSTTLIDGLRKEGR 86
           F   +  P       L++   + G   +   ++T        PS I  TTL++GLRK+ +
Sbjct: 369 FSSKRVLPEEYDYFGLVEALCSSGNSHRALDVVTDLWKTGNIPSLIACTTLVEGLRKQKK 428

Query: 87  VNDAMNVTERMLEVGMIPDSVTFNSLL 146
             +A+ + E ML+ G++PD VTFN LL
Sbjct: 429 REEALALMENMLKEGIVPDIVTFNCLL 455

Query: 147  206
           
Sbjct: 489  455

Query: 207  266
           
Sbjct: 549  455

Query: 267  288
           
Sbjct: 609  455

HSP 2 Score: 33.5 bits (75), Expect = 1.7e+02
Identity = 22/73 (30.14%), Postives = 34/73 (46.58%), Query Frame = 3


Query: 69  ALLKCFVAKGMQAKPWKLLTSCGWKEMFPSFITSTTLIDGLRKEGRVNDAMNVTERMLEV 128
           AL+  FV  G  A+   +        + P+ IT   LI    +  +   A+ V + M E 
Sbjct: 243 ALIHGFVKWGDHARALAIYDQMIRNRVKPNVITFNILISSYCRSSQFGLALEVFKEMKEK 302

Query: 129 GMIPDSVTFNSLL 188
           G  PD V+FN+L+
Sbjct: 303 GCSPDVVSFNTLI 315

Query: 189  248
           
Sbjct: 363  315

Query: 249  288
           
Sbjct: 423  315

HSP 3 Score: 60.5 bits (145), Expect = 1.3e-06
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 2


Query: 8   VKFCSI---FRGKQVLPKDYDYYGVVEMLCGKGNAGKAMEVVDELWMEGNVPQL 67
           +K C +   F  K VLP+ +DY+G+VE LCG+GN  +AME+V ELW  GN P L
Sbjct: 301 LKACDLLVDFSRKGVLPRAFDYFGLVERLCGEGNVVRAMELVHELWRNGNSPSL 354

Query: 68   127
           
Sbjct: 361  354

Query: 128  161
           
Sbjct: 421  354

[Close]

BLAST of CU091126 vs. NCBI nr
Match: gi|700191149|gb|KGN46353.1| (hypothetical protein Csa_6G087810 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 6.9e-17
Identity = 50/87 (57.47%), Postives = 59/87 (67.82%), Query Frame = 3


Query: 27  FEGSKYCPRITITMALLKCFVAKGMQAKPWKLLTSCGWKEMFPSFITSTTLIDGLRKEGR 86
           F   +  P+      +++    KG   K  +++     +   PSFITSTTLIDGLRKEGR
Sbjct: 206 FSRKQVLPKDYDYYGVVEMLCGKGNAGKAMEVVDELWMEGNVPSFITSTTLIDGLRKEGR 265

Query: 87  VNDAMNVTERMLEVGMIPDSVTFNSLL 146
           VNDAMNVTERMLEVGMIPDSVTFNSLL
Sbjct: 266 VNDAMNVTERMLEVGMIPDSVTFNSLL 292

Query: 147  206
           
Sbjct: 326  292

Query: 207  266
           
Sbjct: 386  292

Query: 267  288
           
Sbjct: 446  292

[Close]

BLAST of CU091126 vs. NCBI nr
Match: gi|449445824|ref|XP_004140672.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 6.9e-17
Identity = 50/87 (57.47%), Postives = 59/87 (67.82%), Query Frame = 3


Query: 27  FEGSKYCPRITITMALLKCFVAKGMQAKPWKLLTSCGWKEMFPSFITSTTLIDGLRKEGR 86
           F   +  P+      +++    KG   K  +++     +   PSFITSTTLIDGLRKEGR
Sbjct: 315 FSRKQVLPKDYDYYGVVEMLCGKGNAGKAMEVVDELWMEGNVPSFITSTTLIDGLRKEGR 374

Query: 87  VNDAMNVTERMLEVGMIPDSVTFNSLL 146
           VNDAMNVTERMLEVGMIPDSVTFNSLL
Sbjct: 375 VNDAMNVTERMLEVGMIPDSVTFNSLL 401

Query: 147  206
           
Sbjct: 435  401

Query: 207  266
           
Sbjct: 495  401

Query: 267  288
           
Sbjct: 555  401

[Close]

BLAST of CU091126 vs. NCBI nr
Match: gi|659120062|ref|XP_008459992.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 1.7e-15
Identity = 46/87 (52.87%), Postives = 59/87 (67.82%), Query Frame = 3


Query: 27  FEGSKYCPRITITMALLKCFVAKGMQAKPWKLLTSCGWKEMFPSFITSTTLIDGLRKEGR 86
           F   +  P+      +++    KG   K  +++     +   PSFITSTTLIDGLRKEGR
Sbjct: 315 FSRKQVLPKDYDYYGVVEMLCGKGNTGKAVEVVNELWMEGNVPSFITSTTLIDGLRKEGR 374

Query: 87  VNDAMNVTERMLEVGMIPDSVTFNSLL 146
           V+DAMN+TERML+VGM+PDSVTFNSLL
Sbjct: 375 VHDAMNITERMLKVGMVPDSVTFNSLL 401

Query: 147  206
           
Sbjct: 435  401

Query: 207  266
           
Sbjct: 495  401

Query: 267  288
           
Sbjct: 555  401

[Close]

BLAST of CU091126 vs. NCBI nr
Match: gi|568856388|ref|XP_006481766.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Citrus sinensis])

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-10
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 2


Query: 2   RHVKFCSI---FRGKQVLPKDYDYYGVVEMLCGKGNAGKAMEVVDELWMEGNVPQL 61
           R +K C +   F  + VLPKD+DY+G+VE LCG+GNAG A+EVVDELW +GN+P +
Sbjct: 310 RVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSV 365

Query: 62   121
           
Sbjct: 370  365

Query: 122  161
           
Sbjct: 430  365

[Close]

BLAST of CU091126 vs. NCBI nr
Match: gi|641851545|gb|KDO70415.1| (hypothetical protein CISIN_1g011201mg [Citrus sinensis])

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-10
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 2


Query: 2   RHVKFCSI---FRGKQVLPKDYDYYGVVEMLCGKGNAGKAMEVVDELWMEGNVPQL 61
           R +K C +   F  + VLPKD+DY+G+VE LCG+GNAG A+EVVDELW +GN+P +
Sbjct: 310 RVLKACELVIDFSRRGVLPKDFDYFGLVEKLCGEGNAGIALEVVDELWKKGNLPSV 365

Query: 62   121
           
Sbjct: 370  365

Query: 122  161
           
Sbjct: 430  365

The following BLAST results are available for this feature:

BLAST of CU091126 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP187_ARATH	1.7e-07	52.94	Pentatricopeptide repeat-containing protein At2g36240 OS=Arabidopsis thaliana GN...	[more]

BLAST of CU091126 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KA47_CUCSA	1.8e-16	57.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087810 PE=4 SV=1	[more]
W9R2G2_9ROSA	2.0e-07	53.57	Uncharacterized protein OS=Morus notabilis GN=L484_025847 PE=4 SV=1	[more]
W9R2G2_9ROSA	1.7e-06	40.28	Uncharacterized protein OS=Morus notabilis GN=L484_025847 PE=4 SV=1	[more]
A0A0D2TZL0_GOSRA	6.1e-04	36.11	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G402600 PE=4 SV=1	[more]
A0A059BBC4_EUCGR	2.7e-04	32.18	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00971 PE=4 SV=1	[more]

BLAST of CU091126 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191149\|gb\|KGN46353.1\|	6.9e-17	57.47	hypothetical protein Csa_6G087810 [Cucumis sativus]	[more]
gi\|449445824\|ref\|XP_004140672.1\|	6.9e-17	57.47	PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Cucumis sativu...	[more]
gi\|659120062\|ref\|XP_008459992.1\|	1.7e-15	52.87	PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Cucumis melo]	[more]
gi\|568856388\|ref\|XP_006481766.1\|	1.6e-10	57.14	PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Citrus sinensi...	[more]
gi\|641851545\|gb\|KDO70415.1\|	1.6e-10	57.14	hypothetical protein CISIN_1g011201mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G087810	Csa6G087810	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0160192	G0160192	EST
H0096410	H0096410	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 31..74 score: 1.
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 36..67 score: 2.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 31..65 score: 1
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 26..74 score: 1.7