CU090698 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU090698
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 3050539 .. 3050741 (-)
Sequence length203
The following sequences are available for this feature:

transcribed_cluster sequence

TGGGGGTACATGGGTGGAGCTGAAGAATTTGAGAAATCAATCGATTATTCTGGGGAACGATTGTTGCTTTTTCAATCGAAGCATCGGAGTTTGAAGGATGACAAAAAGATTGCGTTTATTACACGGATGTGAGAGAGGATGAATTTTGAAAAGAAGTACGAGTCGTGTGTTTGATGTTGAAAGGAAAAGGTTCGGAAACATAT
Library categoryESTs
gynoecious flower library2
BLAST of CU090698 vs. TrEMBL
Match: A0A0A0KLM6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G118170 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-10
Identity = 40/66 (60.61%), Postives = 41/66 (62.12%), Query Frame = 2

Query: 5   GTWVELKNLRNQSIILGNDCCFFNRSIGV*RMTKRLRLLHGCERG*ILKRSTSRVFDVER 64
           GTWVELKNLRNQSIILGNDCCF   +       K              KRSTSRVFDVE 
Sbjct: 351 GTWVELKNLRNQSIILGNDCCFSIEASEFEGCKKNCVYYTDVREDEFCKRSTSRVFDVEG 410

Query: 65  KRFGNI 124
           KRFGNI
Sbjct: 411 KRFGNI 416

Query: 125 184
           
Sbjct: 471 416

Query: 185 203
           
Sbjct: 531 416

BLAST of CU090698 vs. NCBI nr
Match: gi|778698509|ref|XP_004149495.2| (PREDICTED: F-box protein At2g26160-like [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 8.0e-12
Identity = 40/66 (60.61%), Postives = 41/66 (62.12%), Query Frame = 2

Query: 5   GTWVELKNLRNQSIILGNDCCFFNRSIGV*RMTKRLRLLHGCERG*ILKRSTSRVFDVER 64
           GTWVELKNLRNQSIILGNDCCF   +       K              KRSTSRVFDVE 
Sbjct: 351 GTWVELKNLRNQSIILGNDCCFSIEASEFEGCKKNCVYYTDVREDEFCKRSTSRVFDVEG 410

Query: 65  KRFGNI 124
           KRFGNI
Sbjct: 411 KRFGNI 416

Query: 125 184
           
Sbjct: 471 416

Query: 185 203
           
Sbjct: 531 416

BLAST of CU090698 vs. NCBI nr
Match: gi|659072629|ref|XP_008466513.1| (PREDICTED: putative F-box protein At1g65770 [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 6.4e-09
Identity = 36/66 (54.55%), Postives = 38/66 (57.58%), Query Frame = 2

Query: 5   GTWVELKNLRNQSIILGNDCCFFNRSIGV*RMTKRLRLLHGCERG*ILKRSTSRVFDVER 64
           GTWVELKNL N+SIILGNDCCF   +       K              KRS SRVFDVE 
Sbjct: 324 GTWVELKNLGNRSIILGNDCCFSIEASEFEGCKKNCVYYTDVTEDAFSKRSRSRVFDVEG 383

Query: 65  KRFGNI 124
           KR GNI
Sbjct: 384 KRIGNI 389

Query: 125 184
           
Sbjct: 444 389

Query: 185 203
           
Sbjct: 504 389

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KLM6_CUCSA1.1e-1060.61Uncharacterized protein OS=Cucumis sativus GN=Csa_5G118170 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778698509|ref|XP_004149495.2|8.0e-1260.61PREDICTED: F-box protein At2g26160-like [Cucumis sativus][more]
gi|659072629|ref|XP_008466513.1|6.4e-0954.55PREDICTED: putative F-box protein At1g65770 [Cucumis melo][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa5G118170Csa5G118170gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0137332G0137332EST
G0182726G0182726EST