CU090477 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU090477
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionZinc finger family protein
LocationChr1 : 8145728 .. 8146008 (-)
Sequence length284
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

CGTTTGCGAGATATGCAGCAAGGGATTTCAGAGAGACCAGAACTTGCAGCTTCATCGACGAGGGCACAACTTGCCGTGGAAGCTTCGACAAAGGACGAACAAGGAAGTGAGGAAGAAGGTGTACGTGTGCCCAGAGAAGAGCTGCGTGCACCACGACCCGGCGAGGGCGCTCGGTGACCTCACCGGGATCGAGAAGCACTATAGTAGGAAGCATGGTGAGAAGAAAATGGGAAGTGTGAGAAGTGCTCTAAAGAAGTATGCAATTCAATCAGTATTGGAAGGCT
Homology
[Close]
BLAST of CU090477 vs. Swiss-Prot
Match: IDD2_ARATH (Protein indeterminate-domain 2 OS=Arabidopsis thaliana GN=IDD2 PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 4.1e-38
Identity = 72/90 (80.00%), Postives = 80/90 (88.89%), Query Frame = 2 

Query: 2   VCEICSKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKSCVHHDPARALGDL 61
           VCEIC+KGFQRDQNLQLHRRGHNLPWKLRQ++NKEV+KKVYVCPE SCVHHDP+RALGDL
Sbjct: 64  VCEICNKGFQRDQNLQLHRRGHNLPWKLRQKSNKEVKKKVYVCPEVSCVHHDPSRALGDL 123

Query: 62  TGIEKHYSRKHGEKKMGSVRSALKKYAIQS 121
           TGI+KH+ RKHGEKK    + + KKYA+QS
Sbjct: 124 TGIKKHFCRKHGEKKWKCDKCS-KKYAVQS 152

Query: 122  181
           
Sbjct: 184  152

Query: 182  241
           
Sbjct: 244  152

Query: 242  272
           
Sbjct: 304  152

[Close]
BLAST of CU090477 vs. Swiss-Prot
Match: IDD3_ARATH (Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.6e-37
Identity = 71/90 (78.89%), Postives = 78/90 (86.67%), Query Frame = 2 

Query: 2   VCEICSKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKSCVHHDPARALGDL 61
           +CEIC KGFQRDQNLQLHRRGHNLPWKL+QRT+KEVRK+VYVCPEKSCVHH P RALGDL
Sbjct: 71  LCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDL 130

Query: 62  TGIEKHYSRKHGEKKMGSVRSALKKYAIQS 121
           TGI+KH+ RKHGEKK    + A K+YA+QS
Sbjct: 131 TGIKKHFCRKHGEKKWKCEKCA-KRYAVQS 159

Query: 122  181
           
Sbjct: 191  159

Query: 182  241
           
Sbjct: 251  159

Query: 242  272
           
Sbjct: 311  159

[Close]
BLAST of CU090477 vs. Swiss-Prot
Match: IDD11_ARATH (Protein indeterminate-domain 11 OS=Arabidopsis thaliana GN=IDD11 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.5e-37
Identity = 73/91 (80.22%), Postives = 80/91 (87.91%), Query Frame = 2 

Query: 2   VCEICSKGFQRDQNLQLHRRGHNLPWKLRQRTNKEV-RKKVYVCPEKSCVHHDPARALGD 61
           VCEIC+KGFQRDQNLQLHRRGHNLPWKL+QR+NKEV RKKVYVCPE SCVHHDP+RALGD
Sbjct: 100 VCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVIRKKVYVCPEASCVHHDPSRALGD 159

Query: 62  LTGIEKHYSRKHGEKKMGSVRSALKKYAIQS 121
           LTGI+KH+ RKHGEKK    + + KKYA+QS
Sbjct: 160 LTGIKKHFCRKHGEKKWKCDKCS-KKYAVQS 189

Query: 122  181
           
Sbjct: 220  189

Query: 182  241
           
Sbjct: 280  189

Query: 242  272
           
Sbjct: 340  189

[Close]
BLAST of CU090477 vs. Swiss-Prot
Match: IDD9_ARATH (Protein indeterminate-domain 9 OS=Arabidopsis thaliana GN=IDD9 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.5e-37
Identity = 70/91 (76.92%), Postives = 81/91 (89.01%), Query Frame = 2 

Query: 2   VCEICSKGFQRDQNLQLHRRGHNLPWKLRQRTNKE-VRKKVYVCPEKSCVHHDPARALGD 61
           +CE+C+KGF+RDQNLQLHRRGHNLPWKL+QRTNKE V+KKVY+CPEK+CVHHDPARALGD
Sbjct: 69  ICEVCNKGFKRDQNLQLHRRGHNLPWKLKQRTNKEQVKKKVYICPEKTCVHHDPARALGD 128

Query: 62  LTGIEKHYSRKHGEKKMGSVRSALKKYAIQS 121
           LTGI+KH+SRKHGEKK    + + KKYA+ S
Sbjct: 129 LTGIKKHFSRKHGEKKWKCDKCS-KKYAVMS 158

Query: 122  181
           
Sbjct: 189  158

Query: 182  241
           
Sbjct: 249  158

Query: 242  272
           
Sbjct: 309  158

[Close]
BLAST of CU090477 vs. Swiss-Prot
Match: IDD1_ARATH (Protein indeterminate-domain 1 OS=Arabidopsis thaliana GN=IDD1 PE=1 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.5e-37
Identity = 71/90 (78.89%), Postives = 75/90 (83.33%), Query Frame = 2 

Query: 2   VCEICSKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKSCVHHDPARALGDL 61
           VCEIC+KGFQRDQNLQLHRRGHNLPWKLRQR+ KEVRKKVYVCP   CVHHDP+RALGDL
Sbjct: 62  VCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTKEVRKKVYVCPVSGCVHHDPSRALGDL 121

Query: 62  TGIEKHYSRKHGEKKMGSVRSALKKYAIQS 121
           TGI+KH+ RKHGEKK        KKYA+QS
Sbjct: 122 TGIKKHFCRKHGEKKW-KCEKCSKKYAVQS 150

Query: 122  181
           
Sbjct: 182  150

Query: 182  241
           
Sbjct: 242  150

Query: 242  272
           
Sbjct: 302  150

[Close]
BLAST of CU090477 vs. TrEMBL
Match: A0A0A0LSI1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G085390 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 6.8e-40
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 2 

Query: 2   VCEICSKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKSCVHHDPARALGDL 61
           VCEICSKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKSCVHHDPARALGDL
Sbjct: 13  VCEICSKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKSCVHHDPARALGDL 72

Query: 62  TGIEKHYSRKHGEKKMGSVRSALKKYAIQS 121
           TGI+KHYSRKHGEKK        KKYA+QS
Sbjct: 73  TGIKKHYSRKHGEKKW-KCEKCSKKYAVQS 101

Query: 122  181
           
Sbjct: 133  101

Query: 182  241
           
Sbjct: 193  101

Query: 242  272
           
Sbjct: 253  101

[Close]
BLAST of CU090477 vs. TrEMBL
Match: A0A061EZX0_THECC (C2H2-like zinc finger protein, putative OS=Theobroma cacao GN=TCM_022127 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.3e-38
Identity = 75/90 (83.33%), Postives = 82/90 (91.11%), Query Frame = 2 

Query: 2   VCEICSKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKSCVHHDPARALGDL 61
           +CEIC+KGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVY+CPEK+CVHHDP+RALGDL
Sbjct: 64  ICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYICPEKTCVHHDPSRALGDL 123

Query: 62  TGIEKHYSRKHGEKKMGSVRSALKKYAIQS 121
           TGI+KHYSRKHGEKK        KKYA+QS
Sbjct: 124 TGIKKHYSRKHGEKKW-KCEKCSKKYAVQS 152

Query: 122  181
           
Sbjct: 184  152

Query: 182  241
           
Sbjct: 244  152

Query: 242  272
           
Sbjct: 304  152

[Close]
BLAST of CU090477 vs. TrEMBL
Match: A0A0K9RJH4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_063600 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.7e-38
Identity = 74/90 (82.22%), Postives = 82/90 (91.11%), Query Frame = 2 

Query: 2   VCEICSKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKSCVHHDPARALGDL 61
           +CEIC+KGFQRDQNLQLHRRGHNLPWKLRQRTNKEV+KKVY+CPEK+CVHHDPARALGDL
Sbjct: 7   ICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVKKKVYICPEKTCVHHDPARALGDL 66

Query: 62  TGIEKHYSRKHGEKKMGSVRSALKKYAIQS 121
           TGI+KH+SRKHGEKK        KKYA+QS
Sbjct: 67  TGIKKHFSRKHGEKKW-KCEKCSKKYAVQS 95

Query: 122  181
           
Sbjct: 127  95

Query: 182  241
           
Sbjct: 187  95

Query: 242  272
           
Sbjct: 247  95

[Close]
BLAST of CU090477 vs. TrEMBL
Match: A0A0B0MFZ6_GOSAR (Zinc finger JACKDAW-like protein OS=Gossypium arboreum GN=F383_12141 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.9e-38
Identity = 74/90 (82.22%), Postives = 81/90 (90.00%), Query Frame = 2 

Query: 2   VCEICSKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKSCVHHDPARALGDL 61
           +CEIC KGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVY+CPEK+CVHHDP+RALGDL
Sbjct: 63  ICEICKKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYICPEKTCVHHDPSRALGDL 122

Query: 62  TGIEKHYSRKHGEKKMGSVRSALKKYAIQS 121
           TGI+KH+SRKHGEKK        KKYA+QS
Sbjct: 123 TGIKKHFSRKHGEKKW-KCEKCSKKYAVQS 151

Query: 122  181
           
Sbjct: 183  151

Query: 182  241
           
Sbjct: 243  151

Query: 242  272
           
Sbjct: 303  151

[Close]
BLAST of CU090477 vs. TrEMBL
Match: A0A0D2SZ97_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G167600 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.9e-38
Identity = 74/90 (82.22%), Postives = 81/90 (90.00%), Query Frame = 2 

Query: 2   VCEICSKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKSCVHHDPARALGDL 61
           +CEIC KGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVY+CPEK+CVHHDP+RALGDL
Sbjct: 65  ICEICKKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYICPEKTCVHHDPSRALGDL 124

Query: 62  TGIEKHYSRKHGEKKMGSVRSALKKYAIQS 121
           TGI+KH+SRKHGEKK        KKYA+QS
Sbjct: 125 TGIKKHFSRKHGEKKW-KCEKCSKKYAVQS 153

Query: 122  181
           
Sbjct: 185  153

Query: 182  241
           
Sbjct: 245  153

Query: 242  272
           
Sbjct: 305  153

[Close]
BLAST of CU090477 vs. NCBI nr
Match: gi|449462075|ref|XP_004148767.1| (PREDICTED: protein indeterminate-domain 2 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 2.8e-39
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 2 

Query: 2   VCEICSKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKSCVHHDPARALGDL 61
           VCEICSKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKSCVHHDPARALGDL
Sbjct: 61  VCEICSKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKSCVHHDPARALGDL 120

Query: 62  TGIEKHYSRKHGEKKMGSVRSALKKYAIQS 121
           TGI+KHYSRKHGEKK        KKYA+QS
Sbjct: 121 TGIKKHYSRKHGEKKW-KCEKCSKKYAVQS 149

Query: 122  181
           
Sbjct: 181  149

Query: 182  241
           
Sbjct: 241  149

Query: 242  272
           
Sbjct: 301  149

[Close]
BLAST of CU090477 vs. NCBI nr
Match: gi|700209647|gb|KGN64743.1| (hypothetical protein Csa_1G085390 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 2.8e-39
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 2 

Query: 2   VCEICSKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKSCVHHDPARALGDL 61
           VCEICSKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKSCVHHDPARALGDL
Sbjct: 13  VCEICSKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKSCVHHDPARALGDL 72

Query: 62  TGIEKHYSRKHGEKKMGSVRSALKKYAIQS 121
           TGI+KHYSRKHGEKK        KKYA+QS
Sbjct: 73  TGIKKHYSRKHGEKKW-KCEKCSKKYAVQS 101

Query: 122  181
           
Sbjct: 133  101

Query: 182  241
           
Sbjct: 193  101

Query: 242  272
           
Sbjct: 253  101

[Close]
BLAST of CU090477 vs. NCBI nr
Match: gi|659072182|ref|XP_008463785.1| (PREDICTED: zinc finger protein JACKDAW-like [Cucumis melo])

HSP 1 Score: 168.3 bits (425), Expect = 6.3e-39
Identity = 79/90 (87.78%), Postives = 82/90 (91.11%), Query Frame = 2 

Query: 2   VCEICSKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKSCVHHDPARALGDL 61
           VCEIC+KGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKSCVHHDPARALGDL
Sbjct: 13  VCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKSCVHHDPARALGDL 72

Query: 62  TGIEKHYSRKHGEKKMGSVRSALKKYAIQS 121
           TGI+KHYSRKHGEKK        KKYA+QS
Sbjct: 73  TGIKKHYSRKHGEKKW-KCEKCSKKYAVQS 101

Query: 122  181
           
Sbjct: 133  101

Query: 182  241
           
Sbjct: 193  101

Query: 242  272
           
Sbjct: 253  101

[Close]
BLAST of CU090477 vs. NCBI nr
Match: gi|1009169470|ref|XP_015865682.1| (PREDICTED: protein indeterminate-domain 9-like [Ziziphus jujuba])

HSP 1 Score: 166.8 bits (421), Expect = 1.8e-38
Identity = 77/90 (85.56%), Postives = 82/90 (91.11%), Query Frame = 2 

Query: 2   VCEICSKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKSCVHHDPARALGDL 61
           +CEIC+KGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKSCVHHDP+RALGDL
Sbjct: 64  ICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKSCVHHDPSRALGDL 123

Query: 62  TGIEKHYSRKHGEKKMGSVRSALKKYAIQS 121
           TGI+KHYSRKHGEKK        KKYA+QS
Sbjct: 124 TGIKKHYSRKHGEKKW-KCEKCSKKYAVQS 152

Query: 122  181
           
Sbjct: 184  152

Query: 182  241
           
Sbjct: 244  152

Query: 242  272
           
Sbjct: 304  152

[Close]
BLAST of CU090477 vs. NCBI nr
Match: gi|1009171168|ref|XP_015866596.1| (PREDICTED: protein indeterminate-domain 9-like [Ziziphus jujuba])

HSP 1 Score: 165.6 bits (418), Expect = 4.1e-38
Identity = 76/90 (84.44%), Postives = 82/90 (91.11%), Query Frame = 2 

Query: 2   VCEICSKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVRKKVYVCPEKSCVHHDPARALGDL 61
           +CEIC+KGFQRDQNLQLHRRGHNLPWKLRQRTNKEV+KKVYVCPEKSCVHHDP+RALGDL
Sbjct: 64  ICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEVKKKVYVCPEKSCVHHDPSRALGDL 123

Query: 62  TGIEKHYSRKHGEKKMGSVRSALKKYAIQS 121
           TGI+KHYSRKHGEKK        KKYA+QS
Sbjct: 124 TGIKKHYSRKHGEKKW-KCEKCSKKYAVQS 152

Query: 122  181
           
Sbjct: 184  152

Query: 182  241
           
Sbjct: 244  152

Query: 242  272
           
Sbjct: 304  152

The following BLAST results are available for this feature:
BLAST of CU090477 vs. Swiss-Prot
Match NameE-valueIdentityDescription
IDD2_ARATH4.1e-3880.00Protein indeterminate-domain 2 OS=Arabidopsis thaliana GN=IDD2 PE=2 SV=1[more]
IDD3_ARATH1.6e-3778.89Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1[more]
IDD11_ARATH3.5e-3780.22Protein indeterminate-domain 11 OS=Arabidopsis thaliana GN=IDD11 PE=2 SV=1[more]
IDD9_ARATH3.5e-3776.92Protein indeterminate-domain 9 OS=Arabidopsis thaliana GN=IDD9 PE=2 SV=1[more]
IDD1_ARATH3.5e-3778.89Protein indeterminate-domain 1 OS=Arabidopsis thaliana GN=IDD1 PE=1 SV=1[more]
BLAST of CU090477 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSI1_CUCSA6.8e-4088.89Uncharacterized protein OS=Cucumis sativus GN=Csa_1G085390 PE=4 SV=1[more]
A0A061EZX0_THECC1.3e-3883.33C2H2-like zinc finger protein, putative OS=Theobroma cacao GN=TCM_022127 PE=4 SV... [more]
A0A0K9RJH4_SPIOL3.7e-3882.22Uncharacterized protein OS=Spinacia oleracea GN=SOVF_063600 PE=4 SV=1[more]
A0A0B0MFZ6_GOSAR4.9e-3882.22Zinc finger JACKDAW-like protein OS=Gossypium arboreum GN=F383_12141 PE=4 SV=1[more]
A0A0D2SZ97_GOSRA4.9e-3882.22Uncharacterized protein OS=Gossypium raimondii GN=B456_006G167600 PE=4 SV=1[more]
BLAST of CU090477 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449462075|ref|XP_004148767.1|2.8e-3988.89PREDICTED: protein indeterminate-domain 2 [Cucumis sativus][more]
gi|700209647|gb|KGN64743.1|2.8e-3988.89hypothetical protein Csa_1G085390 [Cucumis sativus][more]
gi|659072182|ref|XP_008463785.1|6.3e-3987.78PREDICTED: zinc finger protein JACKDAW-like [Cucumis melo][more]
gi|1009169470|ref|XP_015865682.1|1.8e-3885.56PREDICTED: protein indeterminate-domain 9-like [Ziziphus jujuba][more]
gi|1009171168|ref|XP_015866596.1|4.1e-3884.44PREDICTED: protein indeterminate-domain 9-like [Ziziphus jujuba][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G085390Csa1G085390gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0125477G0125477EST
H0135344H0135344EST