CU089581 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU089581
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr7 : 6641983 .. 6642218 (-)
Sequence length236
The following sequences are available for this feature:

transcribed_cluster sequence

CCCATTTAAACATAATGATATATTTCACCTTCAAAAACTCAACTGATATTTTGTACCAACAACATCAATCAACAACAATTCTCCACCCTCTAAAAGAATGTTTCAAAATCACTATGATCTATGGAATTGCCATCCATCATGACATCCAACTTCACAACCTTCCAAACACAAGGTCAACCAAGGTCGTTTTAAACATAACTCGACCATATCAACATTTCCATTGCTACACAAACGAG
BLAST of CU089581 vs. Swiss-Prot
Match: ATB_ARATH (F-box protein At-B OS=Arabidopsis thaliana GN=ATB PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.9e-07
Identity = 18/26 (69.23%), Postives = 21/26 (80.77%), Query Frame = -3

Query: 121 LCLKRPWLTLCLEGCEVGCHDGWQFH 180
           +C +RPWLTLC +GCE+GC DGW+FH
Sbjct: 577 ICGQRPWLTLCFDGCELGCSDGWEFH 602

Query: 181 199
           
Sbjct: 637 602

BLAST of CU089581 vs. TrEMBL
Match: A0A0A0K722_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G183650 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-17
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = -3

Query: 115 RLCSNGNVDMVELCLKRPWLTLCLEGCEVGCHDGWQFHRS 174
           RLCSNGNVDMVELCLKRPWLTLCLEGCEVGCHDGWQFHRS
Sbjct: 523 RLCSNGNVDMVELCLKRPWLTLCLEGCEVGCHDGWQFHRS 562

Query: 175 234
           
Sbjct: 583 562

BLAST of CU089581 vs. TrEMBL
Match: A0A067G2W3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007372mg PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-08
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = -3

Query: 115 RLCSNGNVDMVELCLKRPWLTLCLEGCEVGCHDGWQFHRS 174
           RL S GN  + E+  +RPWLT CL+GCE+GCHDGWQFH S
Sbjct: 564 RLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQFHES 603

Query: 175 234
           
Sbjct: 624 603

BLAST of CU089581 vs. TrEMBL
Match: V4UTU7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007786mg PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-08
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = -3

Query: 115 RLCSNGNVDMVELCLKRPWLTLCLEGCEVGCHDGWQFHRS 174
           RL S GN  + E+  +RPWLT CL+GCE+GCHDGWQFH S
Sbjct: 443 RLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQFHES 482

Query: 175 234
           
Sbjct: 503 482

BLAST of CU089581 vs. TrEMBL
Match: V4UIQ1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007786mg PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-08
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = -3

Query: 115 RLCSNGNVDMVELCLKRPWLTLCLEGCEVGCHDGWQFHRS 174
           RL S GN  + E+  +RPWLT CL+GCE+GCHDGWQFH S
Sbjct: 564 RLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQFHES 603

Query: 175 234
           
Sbjct: 624 603

BLAST of CU089581 vs. TrEMBL
Match: A0A067G5R3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007372mg PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-08
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = -3

Query: 115 RLCSNGNVDMVELCLKRPWLTLCLEGCEVGCHDGWQFHRS 174
           RL S GN  + E+  +RPWLT CL+GCE+GCHDGWQFH S
Sbjct: 362 RLASKGNPVITEIHNERPWLTFCLDGCEIGCHDGWQFHES 401

Query: 175 234
           
Sbjct: 422 401

BLAST of CU089581 vs. NCBI nr
Match: gi|700188859|gb|KGN44092.1| (hypothetical protein Csa_7G183650 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 1.8e-18
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = -3

Query: 115 RLCSNGNVDMVELCLKRPWLTLCLEGCEVGCHDGWQFHRS 174
           RLCSNGNVDMVELCLKRPWLTLCLEGCEVGCHDGWQFHRS
Sbjct: 523 RLCSNGNVDMVELCLKRPWLTLCLEGCEVGCHDGWQFHRS 562

Query: 175 234
           
Sbjct: 583 562

BLAST of CU089581 vs. NCBI nr
Match: gi|778725474|ref|XP_011658946.1| (PREDICTED: F-box protein At-B isoform X1 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 1.8e-18
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = -3

Query: 115 RLCSNGNVDMVELCLKRPWLTLCLEGCEVGCHDGWQFHRS 174
           RLCSNGNVDMVELCLKRPWLTLCLEGCEVGCHDGWQFHRS
Sbjct: 573 RLCSNGNVDMVELCLKRPWLTLCLEGCEVGCHDGWQFHRS 612

Query: 175 234
           
Sbjct: 633 612

BLAST of CU089581 vs. NCBI nr
Match: gi|778725477|ref|XP_011658947.1| (PREDICTED: F-box protein At-B isoform X2 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 1.8e-18
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = -3

Query: 115 RLCSNGNVDMVELCLKRPWLTLCLEGCEVGCHDGWQFHRS 174
           RLCSNGNVDMVELCLKRPWLTLCLEGCEVGCHDGWQFHRS
Sbjct: 568 RLCSNGNVDMVELCLKRPWLTLCLEGCEVGCHDGWQFHRS 607

Query: 175 234
           
Sbjct: 628 607

BLAST of CU089581 vs. NCBI nr
Match: gi|778725481|ref|XP_011658948.1| (PREDICTED: F-box protein At-B isoform X3 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 1.8e-18
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = -3

Query: 115 RLCSNGNVDMVELCLKRPWLTLCLEGCEVGCHDGWQFHRS 174
           RLCSNGNVDMVELCLKRPWLTLCLEGCEVGCHDGWQFHRS
Sbjct: 465 RLCSNGNVDMVELCLKRPWLTLCLEGCEVGCHDGWQFHRS 504

Query: 175 234
           
Sbjct: 525 504

BLAST of CU089581 vs. NCBI nr
Match: gi|659093958|ref|XP_008447806.1| (PREDICTED: F-box protein At-B isoform X1 [Cucumis melo])

HSP 1 Score: 92.0 bits (227), Expect = 4.8e-16
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = -3

Query: 115 RLCSNGNVDMVELCLKRPWLTLCLEGCEVGCHDGWQFHRS 174
           RLCSNG+V++VE C KRPWLTLCLEGCEVGCHDGWQFHRS
Sbjct: 573 RLCSNGDVNLVEFCFKRPWLTLCLEGCEVGCHDGWQFHRS 612

Query: 175 234
           
Sbjct: 633 612

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ATB_ARATH6.9e-0769.23F-box protein At-B OS=Arabidopsis thaliana GN=ATB PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0K722_CUCSA1.8e-17100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G183650 PE=4 SV=1[more]
A0A067G2W3_CITSI1.2e-0865.00Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007372mg PE=4 SV=1[more]
V4UTU7_9ROSI1.2e-0865.00Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007786mg PE=4 SV=1[more]
V4UIQ1_9ROSI1.2e-0865.00Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007786mg PE=4 SV=1[more]
A0A067G5R3_CITSI1.2e-0865.00Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g007372mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700188859|gb|KGN44092.1|1.8e-18100.00hypothetical protein Csa_7G183650 [Cucumis sativus][more]
gi|778725474|ref|XP_011658946.1|1.8e-18100.00PREDICTED: F-box protein At-B isoform X1 [Cucumis sativus][more]
gi|778725477|ref|XP_011658947.1|1.8e-18100.00PREDICTED: F-box protein At-B isoform X2 [Cucumis sativus][more]
gi|778725481|ref|XP_011658948.1|1.8e-18100.00PREDICTED: F-box protein At-B isoform X3 [Cucumis sativus][more]
gi|659093958|ref|XP_008447806.1|4.8e-1687.50PREDICTED: F-box protein At-B isoform X1 [Cucumis melo][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa7G183650Csa7G183650gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0077590G0077590EST
H0117832H0117832EST