CU089204 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU089204
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 14650960 .. 14651201 (+)
Sequence length	248

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GTTCCTTTACATTATGCTGTTGGTTGTACTCATACTGATCAACCAAAGGCGCGTGATCATATTGCCTTCTTAAAGTATCATCGCTCAAACAACTGAAAGCCTTGGATAATTTCTTAAACGCTTCTTCAGAACCAGGAGCCTTGTTTTTATCAGGGTGAACTTTTCAAGGAGAGTTTCCTATAAGCCCTCTTAATCTCTTCAGCCGAACTAGTTTTCTCCACACTAAGAATTCCGTAATAGTCCTTGGT

Library


Library category	ESTs
gynoecious flower library	2

Homology

[Close]

BLAST of CU089204 vs. Swiss-Prot
Match: DNJ49_ARATH (Chaperone protein dnaJ 49 OS=Arabidopsis thaliana GN=ATJ49 PE=2 SV=2)

HSP 1 Score: 77.8 bits (190), Expect = 6.2e-14
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = -2


Query: 11  KVHPDKNKAPGSEEAFKKLSKAFSCLSDDTLRRQYDHAPLVDQYEYNQQHN 70
           KVHPDKNKAPGSEEAFKK+SKAF+CLSD   RRQ+D   +VD++++ Q+ N
Sbjct: 125 KVHPDKNKAPGSEEAFKKVSKAFTCLSDGNSRRQFDQVGIVDEFDHVQRRN 175

Query: 71   130
           
Sbjct: 185  175

Query: 131  164
           
Sbjct: 245  175

HSP 2 Score: 32.7 bits (73), Expect = 2.3e+00
Identity = 13/22 (59.09%), Postives = 15/22 (68.18%), Query Frame = -1


Query: 177 DYYGILSVEKTSSAEEIKRAYR 236
           DYY IL +EK  S +EI++AYR
Sbjct: 99  DYYAILGLEKNCSVDEIRKAYR 120

Query: 237  243
           
Sbjct: 159  120

[Close]

BLAST of CU089204 vs. Swiss-Prot
Match: DJB14_XENTR (DnaJ homolog subfamily B member 14 OS=Xenopus tropicalis GN=dnajb14 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.1e-06
Identity = 24/50 (48.00%), Postives = 31/50 (62.00%), Query Frame = -2


Query: 14  KVHPDKNKAPGSEEAFKKLSKAFSCLSDDTLRRQYDHAPLVDQYEYNQQH 73
           K HPDKN APG+ EAFKK+  A++ LS+   R+QYD     DQ + N ++
Sbjct: 132 KFHPDKNHAPGATEAFKKIGNAYAVLSNPEKRKQYDLTGSEDQMQNNHRN 181

Query: 74   133
           
Sbjct: 192  181

Query: 134  164
           
Sbjct: 252  181

[Close]

BLAST of CU089204 vs. Swiss-Prot
Match: DNAJ_METTE (Chaperone protein DnaJ OS=Methanosarcina thermophila GN=dnaJ PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.8e-06
Identity = 25/47 (53.19%), Postives = 31/47 (65.96%), Query Frame = -2


Query: 32  KVHPDKNKAPGSEEAFKKLSKAFSCLSDDTLRRQYD---HAPLVDQY 91
           K HPD+NK PG+EE FK++S+A++ LSD   R QYD   HA +  QY
Sbjct: 32  KYHPDRNKEPGAEEKFKEISEAYAVLSDPEKRAQYDRFGHAGINGQY 78

Query: 92   151
           
Sbjct: 92   78

Query: 152  164
           
Sbjct: 152  78

HSP 2 Score: 30.4 bits (67), Expect = 1.1e+01
Identity = 11/24 (45.83%), Postives = 17/24 (70.83%), Query Frame = -1


Query: 177 TKDYYGILSVEKTSSAEEIKRAYR 236
           T+DYY IL + + ++ E+IK++YR
Sbjct: 4   TRDYYEILGLSRDATPEDIKKSYR 27

Query: 237  249
           
Sbjct: 64   27

[Close]

BLAST of CU089204 vs. Swiss-Prot
Match: DNAJ_METMZ (Chaperone protein DnaJ OS=Methanosarcina mazei GN=dnaJ PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.2e-06
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = -2


Query: 32  HPDKNKAPGSEEAFKKLSKAFSCLSDDTLRRQYD---HAPLVDQY 91
           HPD+NK PG+EE FK++S+A++ LSD   R QYD   HA + +QY
Sbjct: 34  HPDRNKEPGAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQY 78

Query: 92   151
           
Sbjct: 94   78

Query: 152  158
           
Sbjct: 154  78

HSP 2 Score: 32.0 bits (71), Expect = 3.9e+00
Identity = 13/23 (56.52%), Postives = 15/23 (65.22%), Query Frame = -1


Query: 177 KDYYGILSVEKTSSAEEIKRAYR 236
           +DYY IL + K SS E+IK+ YR
Sbjct: 5   RDYYEILGLSKDSSVEDIKKTYR 27

Query: 237  246
           
Sbjct: 65   27

[Close]

BLAST of CU089204 vs. Swiss-Prot
Match: DNAJ_METMA (Chaperone protein DnaJ OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 6.2e-06
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = -2


Query: 32  HPDKNKAPGSEEAFKKLSKAFSCLSDDTLRRQYD---HAPLVDQY 91
           HPD+NK PG+EE FK++S+A++ LSD   R QYD   HA + +QY
Sbjct: 34  HPDRNKEPGAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQY 78

Query: 92   151
           
Sbjct: 94   78

Query: 152  158
           
Sbjct: 154  78

HSP 2 Score: 32.0 bits (71), Expect = 3.9e+00
Identity = 13/23 (56.52%), Postives = 15/23 (65.22%), Query Frame = -1


Query: 177 KDYYGILSVEKTSSAEEIKRAYR 236
           +DYY IL + K SS E+IK+ YR
Sbjct: 5   RDYYEILGLSKDSSVEDIKKTYR 27

Query: 237  246
           
Sbjct: 65   27

[Close]

BLAST of CU089204 vs. TrEMBL
Match: A0A0A0KG46_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G306340 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.9e-22
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = -2


Query: 2   KVHPDKNKAPGSEEAFKKLSKAFSCLSDDTLRRQYDHAPLVDQYEYNQQHNVKE 61
           KVHPDKNKAPGSEEAFKKLSKAFSCLSDDTLRRQYDH PLVDQYEYNQQHNV++
Sbjct: 127 KVHPDKNKAPGSEEAFKKLSKAFSCLSDDTLRRQYDHTPLVDQYEYNQQHNVRQ 180

Query: 62   121
           
Sbjct: 187  180

Query: 122  164
           
Sbjct: 247  180

[Close]

BLAST of CU089204 vs. TrEMBL
Match: A0A0A0KG46_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G306340 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 3.4e-03
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = -1


Query: 177 TKDYYGILSVEKTSSAEEIKRAYR 236
           TKDYYGIL VEKTSSAEEIKRAYR
Sbjct: 99  TKDYYGILGVEKTSSAEEIKRAYR 122

Query: 237  249
           
Sbjct: 159  122

HSP 2 Score: 95.1 bits (235), Expect = 4.2e-17
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = -2


Query: 5   KVHPDKNKAPGSEEAFKKLSKAFSCLSDDTLRRQYDHAPLVDQYEYNQQHNVK 64
           KVHPDKNKAPGSE+AFKK+SKAF CLSDD  RRQYDH  LVD++EYNQQH V+
Sbjct: 133 KVHPDKNKAPGSEDAFKKVSKAFKCLSDDESRRQYDHTGLVDEFEYNQQHQVR 185

Query: 65   124
           
Sbjct: 193  185

Query: 125  164
           
Sbjct: 253  185

[Close]

BLAST of CU089204 vs. TrEMBL
Match: A0A022RYC9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a009020mg PE=4 SV=1)

HSP 1 Score: 35.4 bits (80), Expect = 3.9e+01
Identity = 15/23 (65.22%), Postives = 18/23 (78.26%), Query Frame = -1


Query: 177 KDYYGILSVEKTSSAEEIKRAYR 236
           KDYY IL VEK  + EEI++AYR
Sbjct: 106 KDYYAILGVEKKCTVEEIRKAYR 128

Query: 237  246
           
Sbjct: 166  128

HSP 2 Score: 92.0 bits (227), Expect = 3.5e-16
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = -2


Query: 2   KVHPDKNKAPGSEEAFKKLSKAFSCLSDDTLRRQYDHAPLVDQYEYNQQHNVKE 61
           KVHPDKNKAPGSEEAFK + KAF CLSDD  RRQYD   LVDQ+EYNQ+HNV++
Sbjct: 132 KVHPDKNKAPGSEEAFKTVCKAFKCLSDDNSRRQYDQVGLVDQFEYNQRHNVRQ 185

Query: 62   121
           
Sbjct: 192  185

Query: 122  164
           
Sbjct: 252  185

[Close]

BLAST of CU089204 vs. TrEMBL
Match: A0A0D2R9Y5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G060800 PE=4 SV=1)

HSP 1 Score: 35.4 bits (80), Expect = 3.9e+01
Identity = 14/23 (60.87%), Postives = 19/23 (82.61%), Query Frame = -1


Query: 177 KDYYGILSVEKTSSAEEIKRAYR 236
           KDYY IL VEKT S ++I++AY+
Sbjct: 105 KDYYSILGVEKTCSVDDIRKAYK 127

Query: 237  246
           
Sbjct: 165  127

HSP 2 Score: 92.0 bits (227), Expect = 3.5e-16
Identity = 41/54 (75.93%), Postives = 46/54 (85.19%), Query Frame = -2


Query: 2   KVHPDKNKAPGSEEAFKKLSKAFSCLSDDTLRRQYDHAPLVDQYEYNQQHNVKE 61
           KVHPDKNKAPGSEEAFK + KAF CLSDD  RRQYD   LVDQ+EYNQ+HNV++
Sbjct: 132 KVHPDKNKAPGSEEAFKTVCKAFKCLSDDNSRRQYDQVGLVDQFEYNQRHNVRQ 185

Query: 62   121
           
Sbjct: 192  185

Query: 122  164
           
Sbjct: 252  185

[Close]

BLAST of CU089204 vs. TrEMBL
Match: A0A0B0NIR0_GOSAR (DnaJ subfamily B member 12 OS=Gossypium arboreum GN=F383_17581 PE=4 SV=1)

HSP 1 Score: 36.6 bits (83), Expect = 1.8e+01
Identity = 15/23 (65.22%), Postives = 19/23 (82.61%), Query Frame = -1


Query: 177 KDYYGILSVEKTSSAEEIKRAYR 236
           KDYY IL VEKT S +EI++AY+
Sbjct: 105 KDYYSILGVEKTCSVDEIRKAYK 127

Query: 237  246
           
Sbjct: 165  127

HSP 2 Score: 91.7 bits (226), Expect = 4.6e-16
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = -2


Query: 5   KVHPDKNKAPGSEEAFKKLSKAFSCLSDDTLRRQYDHAPLVDQYEYNQQHNVK 64
           KVHPDKNKAPGSEEAFKK+ KAF CLSDD  RRQYD   LVD++EYNQQ+NV+
Sbjct: 132 KVHPDKNKAPGSEEAFKKVCKAFKCLSDDNSRRQYDQTGLVDEFEYNQQYNVR 184

Query: 65   124
           
Sbjct: 192  184

Query: 125  164
           
Sbjct: 252  184

[Close]

BLAST of CU089204 vs. NCBI nr
Match: gi|449460955|ref|XP_004148209.1| (PREDICTED: chaperone protein dnaJ 49 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 1.0e-21
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = -2


Query: 2   KVHPDKNKAPGSEEAFKKLSKAFSCLSDDTLRRQYDHAPLVDQYEYNQQHNVKE 61
           KVHPDKNKAPGSEEAFKKLSKAFSCLSDDTLRRQYDH PLVDQYEYNQQHNV++
Sbjct: 127 KVHPDKNKAPGSEEAFKKLSKAFSCLSDDTLRRQYDHTPLVDQYEYNQQHNVRQ 180

Query: 62   121
           
Sbjct: 187  180

Query: 122  164
           
Sbjct: 247  180

[Close]

BLAST of CU089204 vs. NCBI nr
Match: gi|659117133|ref|XP_008458441.1| (PREDICTED: chaperone protein dnaJ 49-like [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 2.9e-19
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = -2


Query: 5   KVHPDKNKAPGSEEAFKKLSKAFSCLSDDTLRRQYDHAPLVDQYEYNQQHNVK 64
           KVHPDKNKAPGSEEAFKKLSKAFSCLSDDTLRR+YD   LVDQYEYNQQHNV+
Sbjct: 127 KVHPDKNKAPGSEEAFKKLSKAFSCLSDDTLRRRYDQTALVDQYEYNQQHNVR 179

Query: 65   124
           
Sbjct: 187  179

Query: 125  164
           
Sbjct: 247  179

[Close]

BLAST of CU089204 vs. NCBI nr
Match: gi|848856945|ref|XP_012827412.1| (PREDICTED: chaperone protein dnaJ 49 [Erythranthe guttata])

HSP 1 Score: 93.6 bits (231), Expect = 1.7e-16
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = -2


Query: 5   KVHPDKNKAPGSEEAFKKLSKAFSCLSDDTLRRQYDHAPLVDQYEYNQQHNVK 64
           KVHPDKNKAPGSE+AFKK+SKAF CLSDD  RRQYDH  LVD++EYNQQH V+
Sbjct: 133 KVHPDKNKAPGSEDAFKKVSKAFKCLSDDESRRQYDHTGLVDEFEYNQQHQVR 185

Query: 65   124
           
Sbjct: 193  185

Query: 125  164
           
Sbjct: 253  185

[Close]

BLAST of CU089204 vs. NCBI nr
Match: gi|697137372|ref|XP_009622786.1| (PREDICTED: chaperone protein dnaJ 49 [Nicotiana tomentosiformis])

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-15
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = -2


Query: 5   KVHPDKNKAPGSEEAFKKLSKAFSCLSDDTLRRQYDHAPLVDQYEYNQQHNVK 64
           KVHPDKNKAPGSEEAFKK+SKAF CLSDD  RRQYD   L +++EYNQQHNV+
Sbjct: 131 KVHPDKNKAPGSEEAFKKVSKAFKCLSDDDSRRQYDQTGLAEEFEYNQQHNVR 183

Query: 65   124
           
Sbjct: 191  183

Query: 125  164
           
Sbjct: 251  183

[Close]

BLAST of CU089204 vs. NCBI nr
Match: gi|698446450|ref|XP_009769265.1| (PREDICTED: chaperone protein dnaJ 49 [Nicotiana sylvestris])

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-15
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = -2


Query: 5   KVHPDKNKAPGSEEAFKKLSKAFSCLSDDTLRRQYDHAPLVDQYEYNQQHNVK 64
           KVHPDKNKAPGSEEAFKK+SKAF CLSDD  RRQYD   L +++EYNQQHNV+
Sbjct: 131 KVHPDKNKAPGSEEAFKKVSKAFKCLSDDDSRRQYDQTGLAEEFEYNQQHNVR 183

Query: 65   124
           
Sbjct: 191  183

Query: 125  164
           
Sbjct: 251  183

The following BLAST results are available for this feature:

BLAST of CU089204 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DNJ49_ARATH	6.2e-14	66.67	Chaperone protein dnaJ 49 OS=Arabidopsis thaliana GN=ATJ49 PE=2 SV=2	[more]
DJB14_XENTR	2.1e-06	48.00	DnaJ homolog subfamily B member 14 OS=Xenopus tropicalis GN=dnajb14 PE=2 SV=1	[more]
DNAJ_METTE	2.8e-06	53.19	Chaperone protein DnaJ OS=Methanosarcina thermophila GN=dnaJ PE=3 SV=1	[more]
DNAJ_METMZ	6.2e-06	53.33	Chaperone protein DnaJ OS=Methanosarcina mazei GN=dnaJ PE=3 SV=1	[more]
DNAJ_METMA	6.2e-06	53.33	Chaperone protein DnaJ OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 /...	[more]

BLAST of CU089204 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KG46_CUCSA	1.9e-22	94.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G306340 PE=4 SV=1	[more]
A0A0A0KG46_CUCSA	3.4e-03	95.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G306340 PE=4 SV=1	[more]
A0A022RYC9_ERYGU	3.9e+01	65.22	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a009020mg PE=4 SV=1	[more]
A0A0D2R9Y5_GOSRA	3.9e+01	60.87	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G060800 PE=4 SV=1	[more]
A0A0B0NIR0_GOSAR	1.8e+01	65.22	DnaJ subfamily B member 12 OS=Gossypium arboreum GN=F383_17581 PE=4 SV=1	[more]

BLAST of CU089204 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449460955\|ref\|XP_004148209.1\|	1.0e-21	94.44	PREDICTED: chaperone protein dnaJ 49 [Cucumis sativus]	[more]
gi\|659117133\|ref\|XP_008458441.1\|	2.9e-19	90.57	PREDICTED: chaperone protein dnaJ 49-like [Cucumis melo]	[more]
gi\|848856945\|ref\|XP_012827412.1\|	1.7e-16	79.25	PREDICTED: chaperone protein dnaJ 49 [Erythranthe guttata]	[more]
gi\|697137372\|ref\|XP_009622786.1\|	1.1e-15	77.36	PREDICTED: chaperone protein dnaJ 49 [Nicotiana tomentosiformis]	[more]
gi\|698446450\|ref\|XP_009769265.1\|	1.1e-15	77.36	PREDICTED: chaperone protein dnaJ 49 [Nicotiana sylvestris]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR001623	DnaJ_domain
IPR018253	DnaJ_domain_CS

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G306340	Csa6G306340	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0055125	G0055125	EST
G0150675	G0150675	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001623	DnaJ domain	PRINTS	PR00625	JDOMAIN	coord: 39..59 score: 7.2E-16coord: 5..23 score: 7.2E-16coord: 23..38 score: 7.2
IPR001623	DnaJ domain	GENE3D	G3DSA:1.10.287.110		coord: 2..72 score: 3.0
IPR001623	DnaJ domain	PFAM	PF00226	DnaJ	coord: 3..64 score: 5.6
IPR001623	DnaJ domain	SMART	SM00271	dnaj_3	coord: 2..59 score: 7.2
IPR001623	DnaJ domain	PROFILE	PS50076	DNAJ_2	coord: 3..67 score: 1
IPR001623	DnaJ domain	unknown	SSF46565	Chaperone J-domain	coord: 2..70 score: 2.75
IPR018253	DnaJ domain, conserved site	PROSITE	PS00636	DNAJ_1	coord: 44..63 scor
None	No IPR available	PANTHER	PTHR24078	DNAJ HOMOLOG SUBFAMILY C MEMBER	coord: 2..64 score: 1.1