CU088808 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU088808
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 23109844 .. 23111638 (-)
Sequence length	391

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TTTTTCCTAGGTTGCACTACTTCTAAAAGCTCGATGTTTCAATTCAAAAGTAGCTCCAGGTGGGATTTTCATTCATTCCTTTTTGACCATATCCAGCCTCTGGGGGAACAATCACCCTTCGCTTTCCCCCAACTTTTCATCCCTTCAGTTATGGGGTACATTGCTGGTGGGGGTTTAGGTGCAGCCTGTGCTGAAAACAGACCATTTGGATTGTCCACAAAATCACGTTTCCGCTCCTTCCCGGGCGGGGCTCCTACTTTGAACTCATAAGGCTGGGCGATAACACGATTTCCAGCCAAGAGCTTAGATTCTCGACTCGACACAGCTGTAATCCCTCTATAGAGGCAATCAAAGTGCACCTGAACTGTGGAACCCTTCTCTGCCACACGGG

Library


Library category	ESTs
gynoecious flower library	2

Homology

[Close]

BLAST of CU088808 vs. Swiss-Prot
Match: FKB18_ARATH (Peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic OS=Arabidopsis thaliana GN=FKBP18 PE=1 SV=2)

HSP 1 Score: 152.9 bits (385), Expect = 2.4e-36
Identity = 74/88 (84.09%), Postives = 77/88 (87.50%), Query Frame = -3


Query: 123 VAEKGSTVQVHFDCLYRGITAVSSRESKLLAGNRVIAQPYEFKVGAPPGKERKRDFVDNP 182
           VA +GST QVHFDC YR ITA+S+RESKLLAGNR IAQPYEFKVG+ PGKERKR+FVDNP
Sbjct: 104 VATEGSTAQVHFDCRYRSITAISTRESKLLAGNRSIAQPYEFKVGSTPGKERKREFVDNP 163

Query: 183 NGLFSAQAAPKPPPAMYPITEGMKSWGK 242
           NGLFSAQAAPKPPPAMY ITEGMK  GK
Sbjct: 164 NGLFSAQAAPKPPPAMYFITEGMKVGGK 191

Query: 243  302
           
Sbjct: 224  191

Query: 303  362
           
Sbjct: 284  191

Query: 363  387
           
Sbjct: 344  191

HSP 2 Score: 38.5 bits (88), Expect = 6.6e-02
Identity = 17/22 (77.27%), Postives = 16/22 (72.73%), Query Frame = -1


Query: 47  IVPPEAGYGQKGMNENPTWSYF 106
           IVPPEAGYGQKGMNE P  + F
Sbjct: 195 IVPPEAGYGQKGMNEIPPGATF 216

Query: 107  113
           
Sbjct: 255  216

[Close]

BLAST of CU088808 vs. TrEMBL
Match: A0A0A0L0S6_CUCSA (Peptidyl-prolyl cis-trans isomerase OS=Cucumis sativus GN=Csa_4G664330 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.1e-40
Identity = 85/90 (94.44%), Postives = 86/90 (95.56%), Query Frame = -3


Query: 117 VAEKGSTVQVHFDCLYRGITAVSSRESKLLAGNRVIAQPYEFKVGAPPGKERKRDFVDNP 176
           VAEKGSTVQVHFDCLYRGITAVSSRESKLLAGNRVIAQPYEFKVGAPPGKERKRDFVDNP
Sbjct: 98  VAEKGSTVQVHFDCLYRGITAVSSRESKLLAGNRVIAQPYEFKVGAPPGKERKRDFVDNP 157

Query: 177 NGLFSAQAAPKPPPAMYPITEGMKSWGKAK 236
           NGLFSAQAAPKPPPAMY ITEGMK  GK +
Sbjct: 158 NGLFSAQAAPKPPPAMYSITEGMKVGGKRR 187

Query: 237  296
           
Sbjct: 218  187

Query: 297  356
           
Sbjct: 278  187

Query: 357  387
           
Sbjct: 338  187

[Close]

BLAST of CU088808 vs. TrEMBL
Match: A0A0A0L0S6_CUCSA (Peptidyl-prolyl cis-trans isomerase OS=Cucumis sativus GN=Csa_4G664330 PE=4 SV=1)

HSP 1 Score: 38.5 bits (88), Expect = 7.3e+00
Identity = 17/22 (77.27%), Postives = 18/22 (81.82%), Query Frame = -1


Query: 47  IVPPEAGYGQKGMNENPTWSYF 106
           IVPPEAGYGQKGMNE P  + F
Sbjct: 189 IVPPEAGYGQKGMNEIPPGATF 210

Query: 107  113
           
Sbjct: 249  210

HSP 2 Score: 169.5 bits (428), Expect = 2.7e-39
Identity = 82/88 (93.18%), Postives = 84/88 (95.45%), Query Frame = -3


Query: 123 VAEKGSTVQVHFDCLYRGITAVSSRESKLLAGNRVIAQPYEFKVGAPPGKERKRDFVDNP 182
           VAEKGSTVQVHFDC+YRGITAVSSRESKLLAGNR+IAQPYEFKVGA PGKERKRDFVDNP
Sbjct: 95  VAEKGSTVQVHFDCIYRGITAVSSRESKLLAGNRIIAQPYEFKVGATPGKERKRDFVDNP 154

Query: 183 NGLFSAQAAPKPPPAMYPITEGMKSWGK 242
           NGLFSAQAAPKPPPAMY ITEGMK  GK
Sbjct: 155 NGLFSAQAAPKPPPAMYSITEGMKVGGK 182

Query: 243  302
           
Sbjct: 215  182

Query: 303  362
           
Sbjct: 275  182

Query: 363  387
           
Sbjct: 335  182

[Close]

BLAST of CU088808 vs. TrEMBL
Match: A0A061FE50_THECC (Peptidyl-prolyl cis-trans isomerase OS=Theobroma cacao GN=TCM_034431 PE=4 SV=1)

HSP 1 Score: 37.0 bits (84), Expect = 2.1e+01
Identity = 16/22 (72.73%), Postives = 17/22 (77.27%), Query Frame = -1


Query: 47  IVPPEAGYGQKGMNENPTWSYF 106
           IVPPEAGYG+KGMNE P    F
Sbjct: 186 IVPPEAGYGEKGMNEIPPGGTF 207

Query: 107  113
           
Sbjct: 246  207

HSP 2 Score: 169.5 bits (428), Expect = 2.7e-39
Identity = 82/88 (93.18%), Postives = 84/88 (95.45%), Query Frame = -3


Query: 123 VAEKGSTVQVHFDCLYRGITAVSSRESKLLAGNRVIAQPYEFKVGAPPGKERKRDFVDNP 182
           VAEKGSTVQVHFDC+YRGITAVSSRESKLLAGNR+IAQPYEFKVGA PGKERKRDFVDNP
Sbjct: 95  VAEKGSTVQVHFDCIYRGITAVSSRESKLLAGNRIIAQPYEFKVGATPGKERKRDFVDNP 154

Query: 183 NGLFSAQAAPKPPPAMYPITEGMKSWGK 242
           NGLFSAQAAPKPPPAMY ITEGMK  GK
Sbjct: 155 NGLFSAQAAPKPPPAMYSITEGMKVGGK 182

Query: 243  302
           
Sbjct: 215  182

Query: 303  362
           
Sbjct: 275  182

Query: 363  387
           
Sbjct: 335  182

[Close]

BLAST of CU088808 vs. TrEMBL
Match: A0A061FF46_THECC (Peptidyl-prolyl cis-trans isomerase OS=Theobroma cacao GN=TCM_034431 PE=4 SV=1)

HSP 1 Score: 37.0 bits (84), Expect = 2.1e+01
Identity = 16/22 (72.73%), Postives = 17/22 (77.27%), Query Frame = -1


Query: 47  IVPPEAGYGQKGMNENPTWSYF 106
           IVPPEAGYG+KGMNE P    F
Sbjct: 188 IVPPEAGYGEKGMNEIPPGGTF 209

Query: 107  113
           
Sbjct: 248  209

HSP 2 Score: 167.9 bits (424), Expect = 7.9e-39
Identity = 80/88 (90.91%), Postives = 84/88 (95.45%), Query Frame = -3


Query: 123 VAEKGSTVQVHFDCLYRGITAVSSRESKLLAGNRVIAQPYEFKVGAPPGKERKRDFVDNP 182
           +AEKGSTVQVHFDC+YRGITAVSSRESKLLAGNR+IAQPYEFKVGAPPGKERKRDFVDNP
Sbjct: 92  IAEKGSTVQVHFDCMYRGITAVSSRESKLLAGNRIIAQPYEFKVGAPPGKERKRDFVDNP 151

Query: 183 NGLFSAQAAPKPPPAMYPITEGMKSWGK 242
           NGLFSAQAAPKPP AMY IT+GMK  GK
Sbjct: 152 NGLFSAQAAPKPPAAMYTITQGMKLGGK 179

Query: 243  302
           
Sbjct: 212  179

Query: 303  362
           
Sbjct: 272  179

Query: 363  387
           
Sbjct: 332  179

[Close]

BLAST of CU088808 vs. TrEMBL
Match: B9R8R8_RICCO (Peptidyl-prolyl cis-trans isomerase OS=Ricinus communis GN=RCOM_1601880 PE=4 SV=1)

HSP 1 Score: 37.0 bits (84), Expect = 2.1e+01
Identity = 16/22 (72.73%), Postives = 18/22 (81.82%), Query Frame = -1


Query: 47  IVPPEAGYGQKGMNENPTWSYF 106
           IVPPEAGYG+KGMNE P  + F
Sbjct: 183 IVPPEAGYGKKGMNEIPPGATF 204

Query: 107  113
           
Sbjct: 243  204

HSP 2 Score: 167.5 bits (423), Expect = 1.0e-38
Identity = 79/87 (90.80%), Postives = 83/87 (95.40%), Query Frame = -3


Query: 123 AEKGSTVQVHFDCLYRGITAVSSRESKLLAGNRVIAQPYEFKVGAPPGKERKRDFVDNPN 182
           AEKG TVQVHFDCLYRGITA+SSRESKLLAGNR+IAQPYEFKVGAPPGKERKR+FVDNPN
Sbjct: 99  AEKGMTVQVHFDCLYRGITAISSRESKLLAGNRIIAQPYEFKVGAPPGKERKREFVDNPN 158

Query: 183 GLFSAQAAPKPPPAMYPITEGMKSWGK 242
           GLFSAQAAPKPPPAMY +TEGMK  GK
Sbjct: 159 GLFSAQAAPKPPPAMYSVTEGMKVGGK 185

Query: 243  302
           
Sbjct: 219  185

Query: 303  362
           
Sbjct: 279  185

Query: 363  384
           
Sbjct: 339  185

[Close]

BLAST of CU088808 vs. NCBI nr
Match: gi|449455631|ref|XP_004145556.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 5.5e-41
Identity = 85/90 (94.44%), Postives = 86/90 (95.56%), Query Frame = -3


Query: 117 VAEKGSTVQVHFDCLYRGITAVSSRESKLLAGNRVIAQPYEFKVGAPPGKERKRDFVDNP 176
           VAEKGSTVQVHFDCLYRGITAVSSRESKLLAGNRVIAQPYEFKVGAPPGKERKRDFVDNP
Sbjct: 98  VAEKGSTVQVHFDCLYRGITAVSSRESKLLAGNRVIAQPYEFKVGAPPGKERKRDFVDNP 157

Query: 177 NGLFSAQAAPKPPPAMYPITEGMKSWGKAK 236
           NGLFSAQAAPKPPPAMY ITEGMK  GK +
Sbjct: 158 NGLFSAQAAPKPPPAMYSITEGMKVGGKRR 187

Query: 237  296
           
Sbjct: 218  187

Query: 297  356
           
Sbjct: 278  187

Query: 357  387
           
Sbjct: 338  187

[Close]

BLAST of CU088808 vs. NCBI nr
Match: gi|659105087|ref|XP_008453010.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic [Cucumis melo])

HSP 1 Score: 175.3 bits (443), Expect = 7.1e-41
Identity = 85/88 (96.59%), Postives = 85/88 (96.59%), Query Frame = -3


Query: 123 VAEKGSTVQVHFDCLYRGITAVSSRESKLLAGNRVIAQPYEFKVGAPPGKERKRDFVDNP 182
           VAEKGSTVQVHFDCLYRGITAVSSRESKLLAGNRVIAQPYEFKVGAPPGKERKRDFVDNP
Sbjct: 98  VAEKGSTVQVHFDCLYRGITAVSSRESKLLAGNRVIAQPYEFKVGAPPGKERKRDFVDNP 157

Query: 183 NGLFSAQAAPKPPPAMYPITEGMKSWGK 242
           NGLFSAQAAPKPPPAMY ITEGMK  GK
Sbjct: 158 NGLFSAQAAPKPPPAMYSITEGMKVGGK 185

Query: 243  302
           
Sbjct: 218  185

Query: 303  362
           
Sbjct: 278  185

Query: 363  387
           
Sbjct: 338  185

[Close]

BLAST of CU088808 vs. NCBI nr
Match: gi|590595637|ref|XP_007018112.1| (FKBP-like peptidyl-prolyl cis-trans isomerase family protein isoform 2 [Theobroma cacao])

HSP 1 Score: 171.0 bits (432), Expect = 1.3e-39
Identity = 82/88 (93.18%), Postives = 84/88 (95.45%), Query Frame = -3


Query: 123 VAEKGSTVQVHFDCLYRGITAVSSRESKLLAGNRVIAQPYEFKVGAPPGKERKRDFVDNP 182
           VAEKGSTVQVHFDC+YRGITAVSSRESKLLAGNR+IAQPYEFKVGA PGKERKRDFVDNP
Sbjct: 95  VAEKGSTVQVHFDCIYRGITAVSSRESKLLAGNRIIAQPYEFKVGATPGKERKRDFVDNP 154

Query: 183 NGLFSAQAAPKPPPAMYPITEGMKSWGK 242
           NGLFSAQAAPKPPPAMY ITEGMK  GK
Sbjct: 155 NGLFSAQAAPKPPPAMYSITEGMKVGGK 182

Query: 243  302
           
Sbjct: 215  182

Query: 303  362
           
Sbjct: 275  182

Query: 363  387
           
Sbjct: 335  182

[Close]

BLAST of CU088808 vs. NCBI nr
Match: gi|590595634|ref|XP_007018111.1| (FKBP-like peptidyl-prolyl cis-trans isomerase family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 171.0 bits (432), Expect = 1.3e-39
Identity = 82/88 (93.18%), Postives = 84/88 (95.45%), Query Frame = -3


Query: 123 VAEKGSTVQVHFDCLYRGITAVSSRESKLLAGNRVIAQPYEFKVGAPPGKERKRDFVDNP 182
           VAEKGSTVQVHFDC+YRGITAVSSRESKLLAGNR+IAQPYEFKVGA PGKERKRDFVDNP
Sbjct: 95  VAEKGSTVQVHFDCIYRGITAVSSRESKLLAGNRIIAQPYEFKVGATPGKERKRDFVDNP 154

Query: 183 NGLFSAQAAPKPPPAMYPITEGMKSWGK 242
           NGLFSAQAAPKPPPAMY ITEGMK  GK
Sbjct: 155 NGLFSAQAAPKPPPAMYSITEGMKVGGK 182

Query: 243  302
           
Sbjct: 215  182

Query: 303  362
           
Sbjct: 275  182

Query: 363  387
           
Sbjct: 335  182

[Close]

BLAST of CU088808 vs. NCBI nr
Match: gi|743895813|ref|XP_011041180.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic isoform X2 [Populus euphratica])

HSP 1 Score: 170.6 bits (431), Expect = 1.8e-39
Identity = 80/88 (90.91%), Postives = 84/88 (95.45%), Query Frame = -3


Query: 123 VAEKGSTVQVHFDCLYRGITAVSSRESKLLAGNRVIAQPYEFKVGAPPGKERKRDFVDNP 182
           VAEKG TVQVHFDCLYRGITA+SSRESKLLAGNR+IAQPYEFKVGAPPGKERKR+FVDNP
Sbjct: 97  VAEKGMTVQVHFDCLYRGITAISSRESKLLAGNRIIAQPYEFKVGAPPGKERKREFVDNP 156

Query: 183 NGLFSAQAAPKPPPAMYPITEGMKSWGK 242
           NGLFSAQAAPKPPPAMY +TEGMK  GK
Sbjct: 157 NGLFSAQAAPKPPPAMYSVTEGMKVGGK 184

Query: 243  302
           
Sbjct: 217  184

Query: 303  362
           
Sbjct: 277  184

Query: 363  387
           
Sbjct: 337  184

The following BLAST results are available for this feature:

BLAST of CU088808 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FKB18_ARATH	2.4e-36	84.09	Peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of CU088808 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0S6_CUCSA	1.1e-40	94.44	Peptidyl-prolyl cis-trans isomerase OS=Cucumis sativus GN=Csa_4G664330 PE=4 SV=1	[more]
A0A0A0L0S6_CUCSA	7.3e+00	77.27	Peptidyl-prolyl cis-trans isomerase OS=Cucumis sativus GN=Csa_4G664330 PE=4 SV=1	[more]
A0A061FE50_THECC	2.1e+01	72.73	Peptidyl-prolyl cis-trans isomerase OS=Theobroma cacao GN=TCM_034431 PE=4 SV=1	[more]
A0A061FF46_THECC	2.1e+01	72.73	Peptidyl-prolyl cis-trans isomerase OS=Theobroma cacao GN=TCM_034431 PE=4 SV=1	[more]
B9R8R8_RICCO	2.1e+01	72.73	Peptidyl-prolyl cis-trans isomerase OS=Ricinus communis GN=RCOM_1601880 PE=4 SV=...	[more]

BLAST of CU088808 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449455631\|ref\|XP_004145556.1\|	5.5e-41	94.44	PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic [Cucumis sa...	[more]
gi\|659105087\|ref\|XP_008453010.1\|	7.1e-41	96.59	PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic [Cucumis me...	[more]
gi\|590595637\|ref\|XP_007018112.1\|	1.3e-39	93.18	FKBP-like peptidyl-prolyl cis-trans isomerase family protein isoform 2 [Theobrom...	[more]
gi\|590595634\|ref\|XP_007018111.1\|	1.3e-39	93.18	FKBP-like peptidyl-prolyl cis-trans isomerase family protein isoform 1 [Theobrom...	[more]
gi\|743895813\|ref\|XP_011041180.1\|	1.8e-39	90.91	PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic isoform X2 ...	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR001179	PPIase_FKBP_dom
IPR023566	PPIase_FKBP

Vocabulary: **Biological Process**
Term	Definition
GO:0006457	protein folding

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G664330	Csa4G664330	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0028046	G0028046	EST
G0168437	G0168437	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001179	FKBP-type peptidyl-prolyl cis-trans isomerase domain	PFAM	PF00254	FKBP_C	coord: 4..92 score: 1.
IPR023566	Peptidyl-prolyl cis-trans isomerase, FKBP-type	PANTHER	PTHR10516	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	coord: 73..90 score: 2.0E-26coord: 2..49 score: 2.0
None	No IPR available	PANTHER	PTHR10516:SF319	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP18, CHLOROPLASTIC	coord: 73..90 score: 2.0E-26coord: 2..49 score: 2.0