CU088346 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU088346
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 6373802 .. 6374272 (+)
Sequence length	371

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AGTCCTTCACTCCACTTATTTGTGATGTATTAGATTGAACACATTCTCGAGTCGATTTTCGACAGCTATGTGAAAAAATGGTCTTCCCATCATCATCTTCTTCCCCATACAATATCTGGATTTGATTCGATTAGTATAATTAAAAACTCAACGTTTCCTGCTTTTGCAGCATCGTGTAGTAGTCTTGTAGATAGTTTAATGAAGTTGTCATTTCGTGGGAAGTTTTTCTGAAAAGCCAGCCATAATTGTTTAACTAATTTACGAGCGAACTTCTTCATCATATCTTTTCTGTAGATTCCTTTGTAGCAATGATTATTGATGGACTTTTTCCAAAAGTTGAATCTCTTCCTGCCACCGATTGCTGATGATTT

Library


Library category	ESTs
fruit (8DPP) library	3

Homology

[Close]

BLAST of CU088346 vs. TrEMBL
Match: A0A0A0LWX0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058110 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 3.5e-44
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = -1


Query: 105 KSSAIGGRKRFNFWKKSINNHCYKGIYRKDMMKKFARKLVKQLWLAFQKNFPRNDNFIKL 164
           KSSAIGGRKRFNFWKKSINNHC+KGIYRKDMMKKFARKLVKQLWLAFQKNFPRNDNFIKL
Sbjct: 289 KSSAIGGRKRFNFWKKSINNHCFKGIYRKDMMKKFARKLVKQLWLAFQKNFPRNDNFIKL 348

Query: 165 STRLLHDAAKAGNVEFLIILIESNPDIVW 224
           STRLLHDAAKAGNVEFLIILIESNPDIVW
Sbjct: 349 STRLLHDAAKAGNVEFLIILIESNPDIVW 377

Query: 225  284
           
Sbjct: 409  377

Query: 285  344
           
Sbjct: 469  377

Query: 345  372
           
Sbjct: 529  377

[Close]

BLAST of CU088346 vs. TrEMBL
Match: A0A0A0LWX0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058110 PE=4 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 9.6e-02
Identity = 19/22 (86.36%), Postives = 20/22 (90.91%), Query Frame = -3


Query: 22  GRPFFHIAVENRLENVFNLIHH 81
           G+  FHIAVENRLENVFNLIHH
Sbjct: 383 GKTIFHIAVENRLENVFNLIHH 404

Query: 82   88
           
Sbjct: 443  404

HSP 2 Score: 29.6 bits (65), Expect = 3.2e+03
Identity = 18/34 (52.94%), Postives = 21/34 (61.76%), Query Frame = -2


Query: 2   EEDDDGKTIFSHSCRKSTRECVQSNTSQISGVKD 61
           EEDDDGKTIF H   ++  E V +     SGVKD
Sbjct: 378 EEDDDGKTIF-HIAVENRLENVFNLIHHNSGVKD 410

Query: 62   104
           
Sbjct: 438  410

HSP 3 Score: 85.1 bits (209), Expect = 6.4e-14
Identity = 46/91 (50.55%), Postives = 56/91 (61.54%), Query Frame = -1


Query: 105 KSSAIGGRKRFNFWKKSINNHCYKGIYRKDMMKKFARKLVKQLWLAFQKNFPRND--NFI 164
           K SAI  +   + WKK IN+     IY KD+MK  A +LVK LW    +  P      FI
Sbjct: 296 KPSAISSKSEISIWKKPINSWTKGIIYGKDVMKTLAHQLVKSLWGHVLRELPEKKMLKFI 355

Query: 165 KLSTRLLHDAAKAGNVEFLIILIESNPDIVW 224
           K  T LLHDAA+AGNVEFLI+LI+S P+I W
Sbjct: 356 KHPTILLHDAARAGNVEFLILLIQSYPNIAW 386

Query: 225  284
           
Sbjct: 416  386

Query: 285  344
           
Sbjct: 476  386

Query: 345  372
           
Sbjct: 536  386

[Close]

BLAST of CU088346 vs. TrEMBL
Match: A0A0A0LU19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058090 PE=4 SV=1)

HSP 1 Score: 38.9 bits (89), Expect = 5.3e+00
Identity = 17/21 (80.95%), Postives = 19/21 (90.48%), Query Frame = -3


Query: 25  GRPFFHIAVENRLENVFNLIH 84
           G+  FHIAVENRLENVF+LIH
Sbjct: 392 GKNVFHIAVENRLENVFSLIH 412

Query: 85   88
           
Sbjct: 452  412

HSP 2 Score: 75.9 bits (185), Expect = 3.9e-11
Identity = 41/91 (45.05%), Postives = 54/91 (59.34%), Query Frame = -1


Query: 105 KSSAIGGRKRFNFWKKSINNHCYKGIYRKDMMKKFARKLVKQLWLAFQKNFPRND--NFI 164
           K SAI    + NFWK  IN+        ++ MK  AR+LV+ LW       P+ +  +FI
Sbjct: 206 KPSAIDRGNQLNFWKNCINSVKRVSNNEEEEMKTLARELVESLWKHVVYELPQKEMLSFI 265

Query: 165 KLSTRLLHDAAKAGNVEFLIILIESNPDIVW 224
           +  +RLLHDAA  GNVEFL++LI   PDIVW
Sbjct: 266 RHPSRLLHDAASVGNVEFLVLLIRRYPDIVW 296

Query: 225  284
           
Sbjct: 326  296

Query: 285  344
           
Sbjct: 386  296

Query: 345  372
           
Sbjct: 446  296

[Close]

BLAST of CU088346 vs. TrEMBL
Match: A0A0A0KRV4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G174620 PE=4 SV=1)

HSP 1 Score: 37.0 bits (84), Expect = 2.0e+01
Identity = 15/21 (71.43%), Postives = 19/21 (90.48%), Query Frame = -3


Query: 25  GRPFFHIAVENRLENVFNLIH 84
           G+  FH+AVENRLE+VFNLI+
Sbjct: 302 GKSIFHVAVENRLEDVFNLIY 322

Query: 85   88
           
Sbjct: 362  322

HSP 2 Score: 74.7 bits (182), Expect = 8.7e-11
Identity = 43/91 (47.25%), Postives = 52/91 (57.14%), Query Frame = -1


Query: 105 KSSAIGGRKRFNFWKKSINNHCYKGIYRKDMMKKFARKLVKQLWLAFQKNFPRND--NFI 164
           +S     R+  N WKK I      G   KD  K  AR+LV  LW    ++    +  +FI
Sbjct: 259 QSEIFRSRREINIWKKCIGY----GTCNKDDAKTLARQLVNSLWEHVLRDLDEKETLDFI 318

Query: 165 KLSTRLLHDAAKAGNVEFLIILIESNPDIVW 224
           K  T LLHDAA+AGNVEFLI+LI S PDIVW
Sbjct: 319 KHPTGLLHDAARAGNVEFLILLIRSYPDIVW 345

Query: 225  284
           
Sbjct: 379  345

Query: 285  344
           
Sbjct: 439  345

Query: 345  372
           
Sbjct: 499  345

[Close]

BLAST of CU088346 vs. TrEMBL
Match: A0A0A0LUM4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058120 PE=4 SV=1)

HSP 1 Score: 39.3 bits (90), Expect = 4.1e+00
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = -3


Query: 25  RPFFHIAVENRLENVFNLIH 84
           +  FHIAVENRLENVFNLIH
Sbjct: 352 KSIFHIAVENRLENVFNLIH 371

HSP 2 Score: 70.9 bits (172), Expect = 1.3e-09
Identity = 36/90 (40.00%), Postives = 57/90 (63.33%), Query Frame = -1


Query: 105 KSSAIGGRKRFNFWKKSINNHCYKGIYRKDMMKKFARKLVKQLW-LAFQKNFPRNDNFIK 164
           K +AIG  ++ N +K+ + N  ++G+Y +D M   A +LV  +W L  +   P+    ++
Sbjct: 240 KPTAIGRERQLNIFKR-LANSIFEGLYFEDKMMGLAHQLVDSMWKLVVKLPEPKVSELLR 299

Query: 165 LSTRLLHDAAKAGNVEFLIILIESNPDIVW 224
             TRLL DAA +GNVEFL+ILI + PD++W
Sbjct: 300 TPTRLLFDAASSGNVEFLVILIRAYPDLLW 328

Query: 225  284
           
Sbjct: 360  328

Query: 285  344
           
Sbjct: 420  328

Query: 345  372
           
Sbjct: 480  328

[Close]

BLAST of CU088346 vs. NCBI nr
Match: gi|778658316|ref|XP_011652495.1| (PREDICTED: ankyrin repeat-containing protein At3g12360 isoform X2 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 3.8e-44
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = -1


Query: 105 KSSAIGGRKRFNFWKKSINNHCYKGIYRKDMMKKFARKLVKQLWLAFQKNFPRNDNFIKL 164
           KSSAIGGRKRFNFWKKSINNHC+KGIYRKDMMKKFARKLVKQLWLAFQKNFPRNDNFIKL
Sbjct: 173 KSSAIGGRKRFNFWKKSINNHCFKGIYRKDMMKKFARKLVKQLWLAFQKNFPRNDNFIKL 232

Query: 165 STRLLHDAAKAGNVEFLIILIESNPDIVW 224
           STRLLHDAAKAGNVEFLIILIESNPDIVW
Sbjct: 233 STRLLHDAAKAGNVEFLIILIESNPDIVW 261

Query: 225  284
           
Sbjct: 293  261

Query: 285  344
           
Sbjct: 353  261

Query: 345  372
           
Sbjct: 413  261

[Close]

BLAST of CU088346 vs. NCBI nr
Match: gi|449470726|ref|XP_004153067.1| (PREDICTED: ankyrin repeat-containing protein At3g12360 isoform X1 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 3.8e-44
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = -1


Query: 105 KSSAIGGRKRFNFWKKSINNHCYKGIYRKDMMKKFARKLVKQLWLAFQKNFPRNDNFIKL 164
           KSSAIGGRKRFNFWKKSINNHC+KGIYRKDMMKKFARKLVKQLWLAFQKNFPRNDNFIKL
Sbjct: 289 KSSAIGGRKRFNFWKKSINNHCFKGIYRKDMMKKFARKLVKQLWLAFQKNFPRNDNFIKL 348

Query: 165 STRLLHDAAKAGNVEFLIILIESNPDIVW 224
           STRLLHDAAKAGNVEFLIILIESNPDIVW
Sbjct: 349 STRLLHDAAKAGNVEFLIILIESNPDIVW 377

Query: 225  284
           
Sbjct: 409  377

Query: 285  344
           
Sbjct: 469  377

Query: 345  372
           
Sbjct: 529  377

[Close]

BLAST of CU088346 vs. NCBI nr
Match: gi|659067665|ref|XP_008440652.1| (PREDICTED: ankyrin repeat-containing protein At3g12360-like [Cucumis melo])

HSP 1 Score: 169.1 bits (427), Expect = 4.9e-39
Identity = 78/89 (87.64%), Postives = 83/89 (93.26%), Query Frame = -1


Query: 105 KSSAIGGRKRFNFWKKSINNHCYKGIYRKDMMKKFARKLVKQLWLAFQKNFPRNDNFIKL 164
           KSSAIGGR  FN WKK INNHC+KGIY KDMMKK ARKLVKQLWLAFQKNFPR+DNFIKL
Sbjct: 287 KSSAIGGRNTFNIWKKCINNHCFKGIYSKDMMKKLARKLVKQLWLAFQKNFPRDDNFIKL 346

Query: 165 STRLLHDAAKAGNVEFLIILIESNPDIVW 224
           STRLLHDAAKAGNVEF+++LIESNPDIVW
Sbjct: 347 STRLLHDAAKAGNVEFIVLLIESNPDIVW 375

Query: 225  284
           
Sbjct: 407  375

Query: 285  344
           
Sbjct: 467  375

Query: 345  372
           
Sbjct: 527  375

[Close]

BLAST of CU088346 vs. NCBI nr
Match: gi|449473453|ref|XP_004153885.1| (PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 7.1e-14
Identity = 46/91 (50.55%), Postives = 56/91 (61.54%), Query Frame = -1


Query: 105 KSSAIGGRKRFNFWKKSINNHCYKGIYRKDMMKKFARKLVKQLWLAFQKNFPRND--NFI 164
           K SAI  +   + WKK IN+     IY KD+MK  A +LVK LW    +  P      FI
Sbjct: 296 KPSAISSKSEISIWKKPINSWTKGIIYGKDVMKTLAHQLVKSLWGHVLRELPEKKMLKFI 355

Query: 165 KLSTRLLHDAAKAGNVEFLIILIESNPDIVW 224
           K  T LLHDAA+AGNVEFLI+LI+S P+I W
Sbjct: 356 KHPTILLHDAARAGNVEFLILLIQSYPNIAW 386

Query: 225  284
           
Sbjct: 416  386

Query: 285  344
           
Sbjct: 476  386

Query: 345  372
           
Sbjct: 536  386

[Close]

BLAST of CU088346 vs. NCBI nr
Match: gi|659067652|ref|XP_008440580.1| (PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X2 [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-13
Identity = 45/91 (49.45%), Postives = 56/91 (61.54%), Query Frame = -1


Query: 105 KSSAIGGRKRFNFWKKSINNHCYKGIYRKDMMKKFARKLVKQLWLAFQKNFPRND--NFI 164
           K SAI  +   + WKK IN+     IY K++MK  A +LVK LW    +  P      FI
Sbjct: 347 KPSAISSKSEISIWKKPINSWTKGIIYGKEVMKTLAHQLVKSLWGHVLRELPEKKMLKFI 406

Query: 165 KLSTRLLHDAAKAGNVEFLIILIESNPDIVW 224
           K  T LLHDAA+AGNVEFLI+LI+S P+I W
Sbjct: 407 KYPTILLHDAARAGNVEFLILLIQSYPNIAW 437

Query: 225  284
           
Sbjct: 467  437

Query: 285  344
           
Sbjct: 527  437

Query: 345  372
           
Sbjct: 587  437

The following BLAST results are available for this feature:

BLAST of CU088346 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWX0_CUCSA	3.5e-44	98.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058110 PE=4 SV=1	[more]
A0A0A0LWX0_CUCSA	9.6e-02	86.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058110 PE=4 SV=1	[more]
A0A0A0LU19_CUCSA	5.3e+00	80.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058090 PE=4 SV=1	[more]
A0A0A0KRV4_CUCSA	2.0e+01	71.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G174620 PE=4 SV=1	[more]
A0A0A0LUM4_CUCSA	4.1e+00	85.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G058120 PE=4 SV=1	[more]

BLAST of CU088346 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778658316\|ref\|XP_011652495.1\|	3.8e-44	98.88	PREDICTED: ankyrin repeat-containing protein At3g12360 isoform X2 [Cucumis sativ...	[more]
gi\|449470726\|ref\|XP_004153067.1\|	3.8e-44	98.88	PREDICTED: ankyrin repeat-containing protein At3g12360 isoform X1 [Cucumis sativ...	[more]
gi\|659067665\|ref\|XP_008440652.1\|	4.9e-39	87.64	PREDICTED: ankyrin repeat-containing protein At3g12360-like [Cucumis melo]	[more]
gi\|449473453\|ref\|XP_004153885.1\|	7.1e-14	50.55	PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus]	[more]
gi\|659067652\|ref\|XP_008440580.1\|	1.2e-13	49.45	PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X2 [Cucumis ...	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR020683	Ankyrin_rpt-contain_dom

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G058110	Csa1G058110	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02LTUBA	FKNP3UI02LTUBA	EST
FKNP3UI02MMSPD	FKNP3UI02MMSPD	EST
FKNP3UI02OTMLF	FKNP3UI02OTMLF	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020683	Ankyrin repeat-containing domain	GENE3D	G3DSA:1.25.40.20		coord: 61..112 score: 1.
None	No IPR available	unknown	SSF140860	Pseudo ankyrin repeat-like	coord: 64..112 score: 2.4