CU088168 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU088168
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionProtein COBRA, putative
LocationChr3 : 4299489 .. 4300034 (-)
Sequence length221
The following sequences are available for this feature:

transcribed_cluster sequence

TGTTCCGATGCCGAAGACCATCCGTCTTGAGAACGATGGATTTAAGTGCCCTGCCCCTCGCCATCGCGGTAAGAGAACAATGCATGTATGCTGCAAAAGGATCCAAAGTTCAAGGTGAAAGAAAAGAAAAAAAGACCAAATTTTTCGCTCGACCAAAATGGAGACCTCTCACTCACTTACGATGTAATGCAAGCTTATGGAAATAATTATCTCGCTCAAGT
BLAST of CU088168 vs. TrEMBL
Match: A0A0A0L312_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G078790 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.0e-11
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 2

Query: 2   VPMPKTIRLENDGFKCPAPRHRGKRTMHVCCKR 61
           VPMPKTIRLENDGFKCPAPRHRGKRTMHVCCK+
Sbjct: 181 VPMPKTIRLENDGFKCPAPRHRGKRTMHVCCKK 213

Query: 62  101
           
Sbjct: 241 213

BLAST of CU088168 vs. TrEMBL
Match: A0A0A0L312_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G078790 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.4e-03
Identity = 23/29 (79.31%), Postives = 24/29 (82.76%), Query Frame = 1

Query: 133 RPNFSLDQNGDLSLTYDVMQAYGNNYLAQ 192
           +  F   QNGDLSLTYDVMQAYGNNYLAQ
Sbjct: 224 KTKFFARQNGDLSLTYDVMQAYGNNYLAQ 252

Query: 193 220
           
Sbjct: 284 252


HSP 2 Score: 58.9 bits (141), Expect = 2.9e-06
Identity = 24/32 (75.00%), Postives = 26/32 (81.25%), Query Frame = 2

Query: 2   VPMPKTIRLENDGFKCPAPRHRGKRTMHVCCK 61
           VPMPKTIRLENDGF+CPAP   G   M+VCCK
Sbjct: 170 VPMPKTIRLENDGFQCPAPHRHGTSAMYVCCK 201

Query: 62  98
           
Sbjct: 230 201

BLAST of CU088168 vs. TrEMBL
Match: W9RRX7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011885 PE=4 SV=1)

HSP 1 Score: 39.7 bits (91), Expect = 1.8e+00
Identity = 16/22 (72.73%), Postives = 19/22 (86.36%), Query Frame = 1

Query: 154 QNGDLSLTYDVMQAYGNNYLAQ 213
           QNGDLS TYD++QA+  NYLAQ
Sbjct: 220 QNGDLSFTYDIIQAFSGNYLAQ 241

Query: 214 220
           
Sbjct: 280 241


HSP 2 Score: 58.2 bits (139), Expect = 5.0e-06
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 2

Query: 2   VPMPKTIRLENDGFKCPAP-RHRGKRTMHVCCKR 61
           +PMPKTI LEN+GFKCP P RHR K  MH+CCK+
Sbjct: 174 IPMPKTIGLENEGFKCPQPRRHRSKSYMHICCKK 207

Query: 62  101
           
Sbjct: 234 207

BLAST of CU088168 vs. TrEMBL
Match: A0A0A0L8A2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G423810 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 5.2e-03
Identity = 21/22 (95.45%), Postives = 22/22 (100.00%), Query Frame = 1

Query: 154 QNGDLSLTYDVMQAYGNNYLAQ 213
           QNGDLSLTYDV+QAYGNNYLAQ
Sbjct: 225 QNGDLSLTYDVLQAYGNNYLAQ 246

Query: 214 220
           
Sbjct: 285 246

BLAST of CU088168 vs. NCBI nr
Match: gi|449470463|ref|XP_004152936.1| (PREDICTED: COBRA-like protein 10 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-11
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 2

Query: 2   VPMPKTIRLENDGFKCPAPRHRGKRTMHVCCKR 61
           VPMPKTIRLENDGFKCPAPRHRGKRTMHVCCK+
Sbjct: 181 VPMPKTIRLENDGFKCPAPRHRGKRTMHVCCKK 213

Query: 62  101
           
Sbjct: 241 213

BLAST of CU088168 vs. NCBI nr
Match: gi|659126984|ref|XP_008463461.1| (PREDICTED: COBRA-like protein 10 [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 2.8e-10
Identity = 30/33 (90.91%), Postives = 32/33 (96.97%), Query Frame = 2

Query: 2   VPMPKTIRLENDGFKCPAPRHRGKRTMHVCCKR 61
           VPMPKTIRL NDGFKCPAPRHRGKR+MHVCCK+
Sbjct: 193 VPMPKTIRLVNDGFKCPAPRHRGKRSMHVCCKK 225

Query: 62  101
           
Sbjct: 253 225

BLAST of CU088168 vs. NCBI nr
Match: gi|703134138|ref|XP_010105567.1| (hypothetical protein L484_011885 [Morus notabilis])

HSP 1 Score: 59.3 bits (142), Expect = 3.2e-06
Identity = 24/32 (75.00%), Postives = 26/32 (81.25%), Query Frame = 2

Query: 2   VPMPKTIRLENDGFKCPAPRHRGKRTMHVCCK 61
           VPMPKTIRLENDGF+CPAP   G   M+VCCK
Sbjct: 170 VPMPKTIRLENDGFQCPAPHRHGTSAMYVCCK 201

Query: 62  98
           
Sbjct: 230 201

BLAST of CU088168 vs. NCBI nr
Match: gi|470119390|ref|XP_004295797.1| (PREDICTED: COBRA-like protein 10 [Fragaria vesca subsp. vesca])

HSP 1 Score: 58.9 bits (141), Expect = 4.2e-06
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 2

Query: 2   VPMPKTIRLENDGFKCPAPRHRGKRTMHVCC 61
           VPMPKTIRL NDG+KCPAPR RGK  M VCC
Sbjct: 187 VPMPKTIRLVNDGYKCPAPRIRGKTNMFVCC 217

Query: 62  95
           
Sbjct: 247 217

BLAST of CU088168 vs. NCBI nr
Match: gi|778688637|ref|XP_011652799.1| (PREDICTED: COBRA-like protein 10 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 7.2e-06
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 2

Query: 2   VPMPKTIRLENDGFKCPAP-RHRGKRTMHVCCKR 61
           +PMPKTI LEN+GFKCP P RHR K  MH+CCK+
Sbjct: 174 IPMPKTIGLENEGFKCPQPRRHRSKSYMHICCKK 207

Query: 62  101
           
Sbjct: 234 207

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0L312_CUCSA1.0e-1196.97Uncharacterized protein OS=Cucumis sativus GN=Csa_3G078790 PE=4 SV=1[more]
A0A0A0L312_CUCSA1.4e-0379.31Uncharacterized protein OS=Cucumis sativus GN=Csa_3G078790 PE=4 SV=1[more]
W9RRX7_9ROSA1.8e+0072.73Uncharacterized protein OS=Morus notabilis GN=L484_011885 PE=4 SV=1[more]
A0A0A0L8A2_CUCSA5.2e-0395.45Uncharacterized protein OS=Cucumis sativus GN=Csa_3G423810 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|449470463|ref|XP_004152936.1|1.5e-1196.97PREDICTED: COBRA-like protein 10 [Cucumis sativus][more]
gi|659126984|ref|XP_008463461.1|2.8e-1090.91PREDICTED: COBRA-like protein 10 [Cucumis melo][more]
gi|703134138|ref|XP_010105567.1|3.2e-0675.00hypothetical protein L484_011885 [Morus notabilis][more]
gi|470119390|ref|XP_004295797.1|4.2e-0680.65PREDICTED: COBRA-like protein 10 [Fragaria vesca subsp. vesca][more]
gi|778688637|ref|XP_011652799.1|7.2e-0670.59PREDICTED: COBRA-like protein 10 [Cucumis sativus][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa3G078790Csa3G078790gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0037571H0037571EST
H0070674H0070674EST
H0106693H0106693EST