CU088073 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU088073
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 15859788 .. 16049827 (-)
Sequence length	132

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AGTCAAAATGATTTTTCATTCCATTGATAGTATTTAGAATATTAAAAATAACCCTGGAACTTTTCAGCCTCAAGTGTAGCACTCATGACCACCAGCTTTAGGTCTGGCCTATTTTTCAATACTTCTTTCAAA

Library


Library category	ESTs
fruit (8DPP) library	1
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU088073 vs. Swiss-Prot
Match: DEAH2_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 OS=Arabidopsis thaliana GN=At3g62310 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 5.9e-08
Identity = 28/29 (96.55%), Postives = 26/29 (89.66%), Query Frame = -2


Query: 45  LKEVLKNRPDLKLVVMSATLEAEKFQGYF 104
           LKEVLKNRPDLKLVVMSATLEAEKFQ YF
Sbjct: 203 LKEVLKNRPDLKLVVMSATLEAEKFQDYF 231

Query: 105  132
           
Sbjct: 263  231

[Close]

BLAST of CU088073 vs. Swiss-Prot
Match: PRP43_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.7e-07
Identity = 27/29 (93.10%), Postives = 26/29 (89.66%), Query Frame = -2


Query: 45  LKEVLKNRPDLKLVVMSATLEAEKFQGYF 104
           LKEVL+NRPDLKLVVMSATLEAEKFQ YF
Sbjct: 207 LKEVLRNRPDLKLVVMSATLEAEKFQEYF 235

Query: 105  132
           
Sbjct: 267  235

[Close]

BLAST of CU088073 vs. TrEMBL
Match: M1AI36_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009019 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.0e-06
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = -2


Query: 45  LKEVLKNRPDLKLVVMSATLEAEKFQGYF 104
           LKEVLKNRPDLKLVVMSATLEAEKFQGYF
Sbjct: 201 LKEVLKNRPDLKLVVMSATLEAEKFQGYF 229

Query: 105  132
           
Sbjct: 261  229

[Close]

BLAST of CU088073 vs. TrEMBL
Match: K4A7X5_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_034438mg PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.0e-06
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = -2


Query: 45  LKEVLKNRPDLKLVVMSATLEAEKFQGYF 104
           LKEVLKNRPDLKLVVMSATLEAEKFQGYF
Sbjct: 37  LKEVLKNRPDLKLVVMSATLEAEKFQGYF 65

Query: 105  132
           
Sbjct: 97   65

[Close]

BLAST of CU088073 vs. TrEMBL
Match: A0A061DTC1_THECC (RNA helicase family protein isoform 10 OS=Theobroma cacao GN=TCM_004856 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.0e-06
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = -2


Query: 45  LKEVLKNRPDLKLVVMSATLEAEKFQGYF 104
           LKEVLKNRPDLKLVVMSATLEAEKFQGYF
Sbjct: 203 LKEVLKNRPDLKLVVMSATLEAEKFQGYF 231

Query: 105  132
           
Sbjct: 263  231

[Close]

BLAST of CU088073 vs. TrEMBL
Match: V7D1Y3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G214700g PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.0e-06
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = -2


Query: 45  LKEVLKNRPDLKLVVMSATLEAEKFQGYF 104
           LKEVLKNRPDLKLVVMSATLEAEKFQGYF
Sbjct: 202 LKEVLKNRPDLKLVVMSATLEAEKFQGYF 230

Query: 105  132
           
Sbjct: 262  230

[Close]

BLAST of CU088073 vs. TrEMBL
Match: W9QW63_9ROSA (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Morus notabilis GN=L484_018765 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.0e-06
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = -2


Query: 45  LKEVLKNRPDLKLVVMSATLEAEKFQGYF 104
           LKEVLKNRPDLKLVVMSATLEAEKFQGYF
Sbjct: 400 LKEVLKNRPDLKLVVMSATLEAEKFQGYF 428

Query: 105  132
           
Sbjct: 460  428

[Close]

BLAST of CU088073 vs. NCBI nr
Match: gi|992281472|gb|KXG39504.1| (hypothetical protein SORBI_001G392300 [Sorghum bicolor])

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-06
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = -2


Query: 45  LKEVLKNRPDLKLVVMSATLEAEKFQGYF 104
           LKEVLKNRPDLKLVVMSATLEAEKFQGYF
Sbjct: 37  LKEVLKNRPDLKLVVMSATLEAEKFQGYF 65

Query: 105  132
           
Sbjct: 97   65

[Close]

BLAST of CU088073 vs. NCBI nr
Match: gi|641868244|gb|KDO86928.1| (hypothetical protein CISIN_1g004850mg [Citrus sinensis])

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-06
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = -2


Query: 45  LKEVLKNRPDLKLVVMSATLEAEKFQGYF 104
           LKEVLKNRPDLKLVVMSATLEAEKFQGYF
Sbjct: 207 LKEVLKNRPDLKLVVMSATLEAEKFQGYF 235

Query: 105  132
           
Sbjct: 267  235

[Close]

BLAST of CU088073 vs. NCBI nr
Match: gi|413955896|gb|AFW88545.1| (putative RNA helicase family protein, partial [Zea mays])

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-06
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = -2


Query: 45  LKEVLKNRPDLKLVVMSATLEAEKFQGYF 104
           LKEVLKNRPDLKLVVMSATLEAEKFQGYF
Sbjct: 37  LKEVLKNRPDLKLVVMSATLEAEKFQGYF 65

Query: 105  132
           
Sbjct: 97   65

[Close]

BLAST of CU088073 vs. NCBI nr
Match: gi|242041127|ref|XP_002467958.1| (hypothetical protein SORBIDRAFT_01g037170 [Sorghum bicolor])

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-06
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = -2


Query: 45  LKEVLKNRPDLKLVVMSATLEAEKFQGYF 104
           LKEVLKNRPDLKLVVMSATLEAEKFQGYF
Sbjct: 202 LKEVLKNRPDLKLVVMSATLEAEKFQGYF 230

Query: 105  132
           
Sbjct: 262  230

[Close]

BLAST of CU088073 vs. NCBI nr
Match: gi|659101133|ref|XP_008451444.1| (PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Cucumis melo])

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-06
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = -2


Query: 45  LKEVLKNRPDLKLVVMSATLEAEKFQGYF 104
           LKEVLKNRPDLKLVVMSATLEAEKFQGYF
Sbjct: 210 LKEVLKNRPDLKLVVMSATLEAEKFQGYF 238

Query: 105  132
           
Sbjct: 270  238

The following BLAST results are available for this feature:

BLAST of CU088073 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DEAH2_ARATH	5.9e-08	96.55	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 OS=Arabidopsi...	[more]
PRP43_ARATH	1.7e-07	93.10	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 OS=Arabidopsi...	[more]

BLAST of CU088073 vs. TrEMBL


Match Name	E-value	Identity	Description
M1AI36_SOLTU	1.0e-06	100.00	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009019 PE=4 SV=1	[more]
K4A7X5_SETIT	1.0e-06	100.00	Uncharacterized protein OS=Setaria italica GN=SETIT_034438mg PE=4 SV=1	[more]
A0A061DTC1_THECC	1.0e-06	100.00	RNA helicase family protein isoform 10 OS=Theobroma cacao GN=TCM_004856 PE=4 SV=...	[more]
V7D1Y3_PHAVU	1.0e-06	100.00	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G214700g PE=4 SV=1	[more]
W9QW63_9ROSA	1.0e-06	100.00	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Morus notabilis ...	[more]

BLAST of CU088073 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|992281472\|gb\|KXG39504.1\|	1.5e-06	100.00	hypothetical protein SORBI_001G392300 [Sorghum bicolor]	[more]
gi\|641868244\|gb\|KDO86928.1\|	1.5e-06	100.00	hypothetical protein CISIN_1g004850mg [Citrus sinensis]	[more]
gi\|413955896\|gb\|AFW88545.1\|	1.5e-06	100.00	putative RNA helicase family protein, partial [Zea mays]	[more]
gi\|242041127\|ref\|XP_002467958.1\|	1.5e-06	100.00	hypothetical protein SORBIDRAFT_01g037170 [Sorghum bicolor]	[more]
gi\|659101133\|ref\|XP_008451444.1\|	1.5e-06	100.00	PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Cucumis...	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa7G412880	Csa7G412880	gene
Csa7G412860	Csa7G412860	gene
Csa7G419600	Csa7G419600	gene
Csa7G414450	Csa7G414450	gene
Csa7G413390	Csa7G413390	gene
Csa7G414410	Csa7G414410	gene
Csa7G412850	Csa7G412850	gene
Csa7G413380	Csa7G413380	gene
Csa7G412870	Csa7G412870	gene
Csa7G419580	Csa7G419580	gene
Csa7G419610	Csa7G419610	gene
Csa7G419590	Csa7G419590	gene
Csa7G414390	Csa7G414390	gene
Csa7G414440	Csa7G414440	gene
Csa7G414430	Csa7G414430	gene
Csa7G414520	Csa7G414520	gene
Csa7G419550	Csa7G419550	gene
Csa7G419570	Csa7G419570	gene
Csa7G413890	Csa7G413890	gene
Csa7G414490	Csa7G414490	gene
Csa7G419560	Csa7G419560	gene
Csa7G419540	Csa7G419540	gene
Csa7G414480	Csa7G414480	gene
Csa7G414500	Csa7G414500	gene
Csa7G414510	Csa7G414510	gene
Csa7G414470	Csa7G414470	gene
Csa7G414460	Csa7G414460	gene
Csa7G419530	Csa7G419530	gene
Csa7G414530	Csa7G414530	gene
Csa7G414420	Csa7G414420	gene
Csa7G414400	Csa7G414400	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02O47R4	FKNP3UI02O47R4	EST
H0095224	H0095224	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 2..23 score: 5.