CU087776 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU087776
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionCytoplasmic dynein 2 light intermediate chain 1
LocationChr1 : 90436 .. 95398 (+)
Sequence length252
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

TGATACTCCTTCTATGCCCATGATCCTCACTGCTGTTGGAATTGCTCTCTTCGCTAAACTCCTTATGATGTATGATGAGTCAAGATCTGAAGAGTTGATAGAGCGACAAAATAAAGAATGCTACCACCAGGTCAAGGAACTGTGAGGATGCTTAGTCGTCGGGAGTGGGAGGAAATTCGAGAAGTTCGACCAAGGACTCCGTTCGAATCCAAGCTTGCTCGTCCAAAATGCAAGAATCAGAACTGGAGAACC
Homology
[Close]
BLAST of CU087776 vs. TrEMBL
Match: A0A0A0LR33_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000630 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.4e-11
Identity = 49/86 (56.98%), Postives = 57/86 (66.28%), Query Frame = 2 

Query: 2   DTPSMPMILTAVGIALFAKLLMMYDESRSEELIERQNKECYHQVKEL*GCLVVGSGRKFE 61
           DTPSMPMILTAVGIALFAKLLMMYDESRSEELIER+ K          G + + S +++E
Sbjct: 62  DTPSMPMILTAVGIALFAKLLMMYDESRSEELIERKIKNAPPGQ----GTVRMLSRQEWE 121

Query: 62  KFDQGLRSNP---SLLVQNARIRTGE 121
           +  +     P    L   NARIRTGE
Sbjct: 122 EIREVRPRTPFESKLARPNARIRTGE 143

Query: 122  181
           
Sbjct: 182  143

Query: 182  241
           
Sbjct: 242  143

Query: 242  251
           
Sbjct: 302  143

[Close]
BLAST of CU087776 vs. TrEMBL
Match: A0A061F9Y0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_032134 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.3e-10
Identity = 33/37 (89.19%), Postives = 33/37 (89.19%), Query Frame = 1 

Query: 124 PPGQGTVRMLSRREWEEIREVRPRTPFESKLARPKCK 183
           PPGQGTVRMLSR EWEE REVRPRTPFESKLARP  K
Sbjct: 170 PPGQGTVRMLSREEWEEFREVRPRTPFESKLARPNAK 206

Query: 184  235
           
Sbjct: 230  206

[Close]
BLAST of CU087776 vs. TrEMBL
Match: A0A061F9Y0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_032134 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.8e-07
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 2 

Query: 2   DTPSMPMILTAVGIALFAKLLMMYDESRSEELIERQNKECYHQVKEL*GCLVVGSGRKFE 61
           DT ++PM+L   GIALFAKLLMM+DES+S+ELIER+ K          G + + S  ++E
Sbjct: 130 DTATLPMVLAVAGIALFAKLLMMHDESKSQELIERKIKNAPPGQ----GTVRMLSREEWE 189

Query: 62  KFDQGLRSNP---SLLVQNARIRTGE 121
           +F +     P    L   NA++RTGE
Sbjct: 190 EFREVRPRTPFESKLARPNAKVRTGE 211

Query: 122  181
           
Sbjct: 250  211

Query: 182  241
           
Sbjct: 310  211

Query: 242  251
           
Sbjct: 370  211


HSP 2 Score: 72.8 bits (177), Expect = 2.3e-10
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 1 

Query: 124 PPGQGTVRMLSRREWEEIREVRPRTPFESKLARPKCK 183
           PPGQGT+RML+R EWEEIREVRPRTPFESKLARP  K
Sbjct: 104 PPGQGTIRMLTREEWEEIREVRPRTPFESKLARPNAK 140

Query: 184  235
           
Sbjct: 164  140

[Close]
BLAST of CU087776 vs. TrEMBL
Match: A0A0D2Q0T7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G046300 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-05
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 2 

Query: 2   DTPSMPMILTAVGIALFAKLLMMYDESRSEELIERQNKECYHQVKEL*GCLVVGSGRKFE 61
           DT ++PM L   GIALFAKLLMM+DES+S+E+IER+ K          G + + +  ++E
Sbjct: 64  DTATLPMYLAVAGIALFAKLLMMHDESKSQEMIERKIKNAPPGQ----GTIRMLTREEWE 123

Query: 62  KFDQGLRSNP---SLLVQNARIRTGE 121
           +  +     P    L   NA+IRTGE
Sbjct: 124 EIREVRPRTPFESKLARPNAKIRTGE 145

Query: 122  181
           
Sbjct: 184  145

Query: 182  241
           
Sbjct: 244  145

Query: 242  251
           
Sbjct: 304  145


HSP 2 Score: 72.8 bits (177), Expect = 2.3e-10
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 1 

Query: 124 PPGQGTVRMLSRREWEEIREVRPRTPFESKLARPKCK 183
           PPGQGT+RML+R EWEEIREVRPRTPFESKLARP  K
Sbjct: 101 PPGQGTIRMLTREEWEEIREVRPRTPFESKLARPNAK 137

Query: 184  235
           
Sbjct: 161  137

[Close]
BLAST of CU087776 vs. TrEMBL
Match: A0A0D2NIA1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G046300 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-05
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 2 

Query: 2   DTPSMPMILTAVGIALFAKLLMMYDESRSEELIERQNKECYHQVKEL*GCLVVGSGRKFE 61
           DT ++PM L   GIALFAKLLMM+DES+S+E+IER+ K          G + + +  ++E
Sbjct: 61  DTATLPMYLAVAGIALFAKLLMMHDESKSQEMIERKIKNAPPGQ----GTIRMLTREEWE 120

Query: 62  KFDQGLRSNP---SLLVQNARIRTGE 121
           +  +     P    L   NA+IRTGE
Sbjct: 121 EIREVRPRTPFESKLARPNAKIRTGE 142

Query: 122  181
           
Sbjct: 181  142

Query: 182  241
           
Sbjct: 241  142

Query: 242  251
           
Sbjct: 301  142


HSP 2 Score: 72.8 bits (177), Expect = 2.3e-10
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 1 

Query: 124 PPGQGTVRMLSRREWEEIREVRPRTPFESKLARPKCK 183
           PPGQGT+RML+R EWEEIREVRPRTPFESKLARP  K
Sbjct: 101 PPGQGTIRMLTREEWEEIREVRPRTPFESKLARPNAK 137

Query: 184  235
           
Sbjct: 161  137

[Close]
BLAST of CU087776 vs. NCBI nr
Match: gi|449440500|ref|XP_004138022.1| (PREDICTED: uncharacterized protein LOC101207324 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-11
Identity = 49/86 (56.98%), Postives = 57/86 (66.28%), Query Frame = 2 

Query: 2   DTPSMPMILTAVGIALFAKLLMMYDESRSEELIERQNKECYHQVKEL*GCLVVGSGRKFE 61
           DTPSMPMILTAVGIALFAKLLMMYDESRSEELIER+ K          G + + S +++E
Sbjct: 62  DTPSMPMILTAVGIALFAKLLMMYDESRSEELIERKIKNAPPGQ----GTVRMLSRQEWE 121

Query: 62  KFDQGLRSNP---SLLVQNARIRTGE 121
           +  +     P    L   NARIRTGE
Sbjct: 122 EIREVRPRTPFESKLARPNARIRTGE 143

Query: 122  181
           
Sbjct: 182  143

Query: 182  241
           
Sbjct: 242  143

Query: 242  251
           
Sbjct: 302  143

[Close]
BLAST of CU087776 vs. NCBI nr
Match: gi|659128795|ref|XP_008464374.1| (PREDICTED: uncharacterized protein LOC103502279 isoform X1 [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 1.7e-11
Identity = 49/86 (56.98%), Postives = 56/86 (65.12%), Query Frame = 2 

Query: 2   DTPSMPMILTAVGIALFAKLLMMYDESRSEELIERQNKECYHQVKEL*GCLVVGSGRKFE 61
           DTPSMPMILTAVGIALFAKLLMMYDESRSEELIER+ K          G + + S  ++E
Sbjct: 62  DTPSMPMILTAVGIALFAKLLMMYDESRSEELIERKIKNAPPGQ----GTVRMLSREEWE 121

Query: 62  KFDQGLRSNP---SLLVQNARIRTGE 121
           +  +     P    L   NARIRTGE
Sbjct: 122 EIREVRPRTPFESKLARPNARIRTGE 143

Query: 122  181
           
Sbjct: 182  143

Query: 182  241
           
Sbjct: 242  143

Query: 242  251
           
Sbjct: 302  143

[Close]
BLAST of CU087776 vs. NCBI nr
Match: gi|823130797|ref|XP_012454845.1| (PREDICTED: uncharacterized protein LOC105776623 isoform X1 [Gossypium raimondii])

HSP 1 Score: 72.8 bits (177), Expect = 3.2e-10
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 1 

Query: 124 PPGQGTVRMLSRREWEEIREVRPRTPFESKLARPKCK 183
           PPGQGT+RML+R EWEEIREVRPRTPFESKLARP  K
Sbjct: 144 PPGQGTIRMLTREEWEEIREVRPRTPFESKLARPNAK 180

Query: 184  235
           
Sbjct: 204  180

[Close]
BLAST of CU087776 vs. NCBI nr
Match: gi|823130803|ref|XP_012454872.1| (PREDICTED: uncharacterized protein LOC105776623 isoform X4 [Gossypium raimondii])

HSP 1 Score: 72.8 bits (177), Expect = 3.2e-10
Identity = 32/37 (86.49%), Postives = 34/37 (91.89%), Query Frame = 1 

Query: 124 PPGQGTVRMLSRREWEEIREVRPRTPFESKLARPKCK 183
           PPGQGT+RML+R EWEEIREVRPRTPFESKLARP  K
Sbjct: 101 PPGQGTIRMLTREEWEEIREVRPRTPFESKLARPNAK 137

Query: 184  235
           
Sbjct: 161  137

[Close]
BLAST of CU087776 vs. NCBI nr
Match: gi|590611105|ref|XP_007022007.1| (Uncharacterized protein TCM_032134 [Theobroma cacao])

HSP 1 Score: 72.8 bits (177), Expect = 3.2e-10
Identity = 33/37 (89.19%), Postives = 33/37 (89.19%), Query Frame = 1 

Query: 124 PPGQGTVRMLSRREWEEIREVRPRTPFESKLARPKCK 183
           PPGQGTVRMLSR EWEE REVRPRTPFESKLARP  K
Sbjct: 170 PPGQGTVRMLSREEWEEFREVRPRTPFESKLARPNAK 206

Query: 184  235
           
Sbjct: 230  206

The following BLAST results are available for this feature:
BLAST of CU087776 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LR33_CUCSA3.4e-1156.98Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000630 PE=4 SV=1[more]
A0A061F9Y0_THECC2.3e-1089.19Uncharacterized protein OS=Theobroma cacao GN=TCM_032134 PE=4 SV=1[more]
A0A061F9Y0_THECC8.8e-0744.19Uncharacterized protein OS=Theobroma cacao GN=TCM_032134 PE=4 SV=1[more]
A0A0D2Q0T7_GOSRA2.8e-0541.86Uncharacterized protein OS=Gossypium raimondii GN=B456_002G046300 PE=4 SV=1[more]
A0A0D2NIA1_GOSRA2.8e-0541.86Uncharacterized protein OS=Gossypium raimondii GN=B456_002G046300 PE=4 SV=1[more]
BLAST of CU087776 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449440500|ref|XP_004138022.1|1.3e-1156.98PREDICTED: uncharacterized protein LOC101207324 [Cucumis sativus][more]
gi|659128795|ref|XP_008464374.1|1.7e-1156.98PREDICTED: uncharacterized protein LOC103502279 isoform X1 [Cucumis melo][more]
gi|823130797|ref|XP_012454845.1|3.2e-1086.49PREDICTED: uncharacterized protein LOC105776623 isoform X1 [Gossypium raimondii][more]
gi|823130803|ref|XP_012454872.1|3.2e-1086.49PREDICTED: uncharacterized protein LOC105776623 isoform X4 [Gossypium raimondii][more]
gi|590611105|ref|XP_007022007.1|3.2e-1089.19Uncharacterized protein TCM_032134 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G000630Csa1G000630gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02NHSGJFKNP3UI02NHSGJEST
G0147023G0147023EST


InterPro
Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36008FAMILY NOT NAMEDcoord: 2..76
score: 7.5