CU087183 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU087183
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 20001127 .. 20001508 (+)
Sequence length	314

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TAGCTTTTTCTTCTCTTCAATCGGAAGTTGGAACAATTTCTGCGTTTCCATCTTCATTCTCTCCATCAATGAATCGCTCACTCCATGCTTCACCAACTGAAAGAATCCCCAATTTTTACAGGCGGAGTGAAGGCGAGACAATTCGGAGTCCATTGTATCATTAGAGCGGAAGTTGGACATGTCGATCACGGGGATTTGGGAAGCGGCGGAGGCGATCGGGGAGTGGTGGAGGAGATCGGGGCGGATGTATCGATGTGGAATTTTCGGTGATGGGGTGTTTGGCTAACTCTTGAACCCCCCGCCGTAATGGACCA

Library


Library category	ESTs
fruit (8DPP) library	1
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU087183 vs. Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.9e-16
Identity = 38/85 (44.71%), Postives = 56/85 (65.88%), Query Frame = -3


Query: 10  IPHRYIRPDLLHHSPIASAAS-QIPVIDMSNFRSNDTMDSELSRLHSACKNWGFFQLVKH 69
           +P+RY+RP+L H   +    S +IPVID+S          EL++ HSAC +WGFFQL+ H
Sbjct: 28  LPNRYVRPELEHDDVVPIDNSLEIPVIDLSRLLDQQYACDELAKFHSACLDWGFFQLINH 87

Query: 70  GVSDSLMERMKMETQKLFQLPIEEK 129
           GV + ++E+MK++T+  F+LP +EK
Sbjct: 88  GVREEVIEKMKVDTEDFFRLPFKEK 112

Query: 130  189
           
Sbjct: 148  112

Query: 190  249
           
Sbjct: 208  112

Query: 250  262
           
Sbjct: 268  112

[Close]

BLAST of CU087183 vs. Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.9e-16
Identity = 41/88 (46.59%), Postives = 52/88 (59.09%), Query Frame = -3


Query: 4   IPHRYIRPDL--LHHSPIASAASQIPVIDMSNFRSNDTMDSELSRLHSACKNWGFFQLVK 63
           +P RY+R D              +IP+IDM    S+ TMDSE+ +L  ACK WGFFQLV 
Sbjct: 29  VPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDSEVEKLDFACKEWGFFQLVN 88

Query: 64  HGVSDSLMERMKMETQKLFQLPIEEKKK 123
           HG+  S ++++K E Q  F LP+EEKKK
Sbjct: 89  HGIDSSFLDKVKSEIQDFFNLPMEEKKK 116

Query: 124  183
           
Sbjct: 149  116

Query: 184  243
           
Sbjct: 209  116

Query: 244  262
           
Sbjct: 269  116

[Close]

BLAST of CU087183 vs. Swiss-Prot
Match: DIOX2_PAPSO (Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 7.3e-12
Identity = 40/93 (43.01%), Postives = 52/93 (55.91%), Query Frame = -3


Query: 4   KIPHRYIRPDLLHHSPIASAA----SQIPVIDMSNFRSND--TMDSELSRLHSACKNWGF 63
           +IP RYI        P+ ++       +PVID+ N  S++  T   EL RLHSACK WGF
Sbjct: 28  EIPSRYICTVENLQLPVGASVIDDHETVPVIDIENLISSEPVTEKLELDRLHSACKEWGF 87

Query: 64  FQLVKHGVSDSLMERMKMETQKLFQLPIEEKKK 123
           FQ+V HGV  SL++ +K + Q  F L + EK K
Sbjct: 88  FQVVNHGVDTSLVDNVKSDIQGFFNLSMNEKIK 120

Query: 124  183
           
Sbjct: 148  120

Query: 184  243
           
Sbjct: 208  120

Query: 244  265
           
Sbjct: 268  120

[Close]

BLAST of CU087183 vs. Swiss-Prot
Match: DIOX3_PAPSO (Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-11
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = -3


Query: 4   IPVIDMSNFRSNDTMDS--ELSRLHSACKNWGFFQLVKHGVSDSLMERMKMETQKLFQLP 63
           +PVID+ N  S + +    EL +LHSACK WGFFQLV HGV   LM+ +K E +  F LP
Sbjct: 54  VPVIDLQNLLSPEPVVGKLELDKLHSACKEWGFFQLVNHGVDALLMDNIKSEIKGFFNLP 113

Query: 64  IEEKKK 123
           + EK K
Sbjct: 114 MNEKTK 119

Query: 124  183
           
Sbjct: 174  119

Query: 184  196
           
Sbjct: 234  119

[Close]

BLAST of CU087183 vs. Swiss-Prot
Match: F6H2_ARATH (Feruloyl CoA ortho-hydroxylase 2 OS=Arabidopsis thaliana GN=F6'H2 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-11
Identity = 39/106 (36.79%), Postives = 55/106 (51.89%), Query Frame = -3


Query: 4   VHYGGGFKS*PNTPSPKIPHRYIRP---DLLHHSPIASAASQIPVIDMSNFRSNDTMDSE 63
           VH G G K    T    +P +YI+P    L++      +   IPVID+SN        + 
Sbjct: 20  VHEGNGVKGLSETGIKVLPDQYIQPFEERLINFHVKEDSDESIPVIDISNLDEKSVSKA- 79

Query: 64  LSRLHSACKNWGFFQLVKHGVSDSLMERMKMETQKLFQLPIEEKKK 123
              +  A + WGFFQ++ HGVS  ++E MK  T + F LP+EEK+K
Sbjct: 80  ---VCDAAEEWGFFQVINHGVSMEVLENMKTATHRFFGLPVEEKRK 121

Query: 124  183
           
Sbjct: 140  121

Query: 184  243
           
Sbjct: 200  121

Query: 244  303
           
Sbjct: 260  121

Query: 304  313
           
Sbjct: 320  121

[Close]

BLAST of CU087183 vs. TrEMBL
Match: A0A067JV41_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27165 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.3e-20
Identity = 52/93 (55.91%), Postives = 64/93 (68.82%), Query Frame = -3


Query: 4   PSPKIPHRYIRPDLLHHSPIAS---AASQIPVIDMSNFRSNDTMDSELSRLHSACKNWGF 63
           P   +P RYIRPD  H    A+   +   IPVIDMS     ++MDSEL++LHSAC  WGF
Sbjct: 24  PLVSVPQRYIRPDQNHSIVSANEDGSLPDIPVIDMSKLTHQESMDSELAKLHSACTEWGF 83

Query: 64  FQLVKHGVSDSLMERMKMETQKLFQLPIEEKKK 123
           FQLV HGVS SL+E MK++ Q+ F LP+EEKKK
Sbjct: 84  FQLVNHGVSSSLLEEMKIQVQEFFDLPVEEKKK 116

Query: 124  183
           
Sbjct: 144  116

Query: 184  243
           
Sbjct: 204  116

Query: 244  274
           
Sbjct: 264  116

[Close]

BLAST of CU087183 vs. TrEMBL
Match: B9SR56_RICCO (Leucoanthocyanidin dioxygenase, putative OS=Ricinus communis GN=RCOM_1181730 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 8.7e-20
Identity = 48/90 (53.33%), Postives = 61/90 (67.78%), Query Frame = -3


Query: 4   PSPKIPHRYIRPDLLHHSPIASAASQIPVIDMSNFRSNDTMDSELSRLHSACKNWGFFQL 63
           P   +P RYIRPD  +         ++PVIDM      D++DSEL++LH ACK+WGFFQL
Sbjct: 29  PMATVPPRYIRPDQDYSIAAPGDDGEVPVIDMQRLYDPDSIDSELAKLHLACKDWGFFQL 88

Query: 64  VKHGVSDSLMERMKMETQKLFQLPIEEKKK 123
           V HG+S SL+E+MKME Q  F LP+ EKKK
Sbjct: 89  VNHGISSSLLEKMKMEVQDFFNLPMAEKKK 118

Query: 124  183
           
Sbjct: 149  118

Query: 184  243
           
Sbjct: 209  118

Query: 244  274
           
Sbjct: 269  118

[Close]

BLAST of CU087183 vs. TrEMBL
Match: A0A166CUN6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_005193 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 8.7e-20
Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = -3


Query: 4   IPHRYIRPDLLHHSPIASAASQIPVIDMSNFRSNDTMDSELSRLHSACKNWGFFQLVKHG 63
           +P RY+RPD        +   ++PVIDM      D MD+EL RLHSACK WGFFQL  HG
Sbjct: 29  VPSRYVRPDQEPALSRPNPGLEVPVIDMEMLLHGDKMDTELERLHSACKEWGFFQLTNHG 88

Query: 64  VSDSLMERMKMETQKLFQLPIEEKKK 123
           VSDSL++R+K E +K F LP+EEKKK
Sbjct: 89  VSDSLLDRVKAEAEKFFNLPLEEKKK 114

Query: 124  183
           
Sbjct: 149  114

Query: 184  243
           
Sbjct: 209  114

Query: 244  262
           
Sbjct: 269  114

[Close]

BLAST of CU087183 vs. TrEMBL
Match: A0A118K1N5_CYNCS (Non-heme dioxygenase N-terminal domain-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_018553 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 8.7e-20
Identity = 46/87 (52.87%), Postives = 65/87 (74.71%), Query Frame = -3


Query: 4   KIPHRYIRPDLLHHSPIASAASQIPVIDMSNFRSNDTMDSELSRLHSACKNWGFFQLVKH 63
           ++PHRYIR +    + + S+  Q+P+I+M N  S D+ D EL +LH ACK+WGFFQL+ H
Sbjct: 41  EVPHRYIRAN--QDASVVSSLPQVPIINMENLSSTDSKDYELEKLHLACKDWGFFQLINH 100

Query: 64  GVSDSLMERMKMETQKLFQLPIEEKKK 123
           GVS SL+E++K ETQ+ F +P+EEKKK
Sbjct: 101 GVSCSLLEKVKQETQEFFNMPMEEKKK 125

Query: 124  183
           
Sbjct: 161  125

Query: 184  243
           
Sbjct: 221  125

Query: 244  265
           
Sbjct: 281  125

[Close]

BLAST of CU087183 vs. TrEMBL
Match: A0A067KKS4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12167 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-19
Identity = 50/90 (55.56%), Postives = 66/90 (73.33%), Query Frame = -3


Query: 4   PSPKIPHRYIRPDLLHHSPIASAASQIPVIDMSNFRSNDTMDSELSRLHSACKNWGFFQL 63
           P   +P RY+RPD+   SPI S+  Q+PVIDMS   S + MD EL + H ACK+WGFFQL
Sbjct: 25  PLTDLPPRYLRPDI--GSPIISSI-QVPVIDMSKLFSQEFMDIELDKFHHACKDWGFFQL 84

Query: 64  VKHGVSDSLMERMKMETQKLFQLPIEEKKK 123
           + HGVS SL+E++K+E Q+ F LP++EKKK
Sbjct: 85  INHGVSSSLVEKLKVEIQEFFNLPMDEKKK 111

Query: 124  183
           
Sbjct: 145  111

Query: 184  243
           
Sbjct: 205  111

Query: 244  274
           
Sbjct: 265  111

[Close]

BLAST of CU087183 vs. NCBI nr
Match: gi|778695605|ref|XP_004146011.2| (PREDICTED: protein SRG1-like [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 5.2e-42
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = -3


Query: 1   PSPKIPHRYIRPDLLHHSPIASAASQIPVIDMSNFRSNDTMDSELSRLHSACKNWGFFQL 60
           P  +IPHRYIRPDLLHHSPIASAASQIPVIDMSNFRSNDTMDSELSRLHSACKNWGFFQL
Sbjct: 28  PITEIPHRYIRPDLLHHSPIASAASQIPVIDMSNFRSNDTMDSELSRLHSACKNWGFFQL 87

Query: 61  VKHGVSDSLMERMKMETQKLFQLPIEEKKKL 120
           VKHGVSDSLMERMKMETQKLFQLPIEEKKKL
Sbjct: 88  VKHGVSDSLMERMKMETQKLFQLPIEEKKKL 118

Query: 121  180
           
Sbjct: 148  118

Query: 181  240
           
Sbjct: 208  118

Query: 241  274
           
Sbjct: 268  118

[Close]

BLAST of CU087183 vs. NCBI nr
Match: gi|659127618|ref|XP_008463796.1| (PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Cucumis melo])

HSP 1 Score: 166.4 bits (420), Expect = 2.7e-38
Identity = 81/91 (89.01%), Postives = 86/91 (94.51%), Query Frame = -3


Query: 1   PSPKIPHRYIRPDLLHHSPIASAASQIPVIDMSNFRSNDTMDSELSRLHSACKNWGFFQL 60
           P  +IPHRYI PDLLHHSPI+S ASQIPVIDMSN RS+DTMDSELSRLHSACKNWGFFQL
Sbjct: 27  PITEIPHRYIHPDLLHHSPISSDASQIPVIDMSNLRSHDTMDSELSRLHSACKNWGFFQL 86

Query: 61  VKHGVSDSLMERMKMETQKLFQLPIEEKKKL 120
           VKHGVSDSL+ERMKMETQKLF+LPIEEKKKL
Sbjct: 87  VKHGVSDSLVERMKMETQKLFELPIEEKKKL 117

Query: 121  180
           
Sbjct: 147  117

Query: 181  240
           
Sbjct: 207  117

Query: 241  274
           
Sbjct: 267  117

[Close]

BLAST of CU087183 vs. NCBI nr
Match: gi|747076446|ref|XP_011085296.1| (PREDICTED: protein SRG1-like [Sesamum indicum])

HSP 1 Score: 105.5 bits (262), Expect = 5.6e-20
Identity = 52/90 (57.78%), Postives = 64/90 (71.11%), Query Frame = -3


Query: 1   IPHRYIRPDLLHH---SPIASAASQIPVIDMSNFRSNDTMDSELSRLHSACKNWGFFQLV 60
           +P RY+RPD   H   S + S+  QIPVIDM  F    TMDSEL  LH+AC+ WGFFQL+
Sbjct: 28  VPPRYVRPDQHQHTILSALNSSFPQIPVIDMQKFSDIYTMDSELQALHNACQEWGFFQLI 87

Query: 61  KHGVSDSLMERMKMETQKLFQLPIEEKKKL 120
            HGV  ++ME+MK+E Q+ F LPIEEKKKL
Sbjct: 88  NHGVGSAVMEKMKIEIQEFFNLPIEEKKKL 117

Query: 121  180
           
Sbjct: 148  117

Query: 181  240
           
Sbjct: 208  117

Query: 241  262
           
Sbjct: 268  117

[Close]

BLAST of CU087183 vs. NCBI nr
Match: gi|802753992|ref|XP_012088618.1| (PREDICTED: protein SRG1-like [Jatropha curcas])

HSP 1 Score: 104.8 bits (260), Expect = 9.5e-20
Identity = 52/93 (55.91%), Postives = 64/93 (68.82%), Query Frame = -3


Query: 4   PSPKIPHRYIRPDLLHHSPIAS---AASQIPVIDMSNFRSNDTMDSELSRLHSACKNWGF 63
           P   +P RYIRPD  H    A+   +   IPVIDMS     ++MDSEL++LHSAC  WGF
Sbjct: 24  PLVSVPQRYIRPDQNHSIVSANEDGSLPDIPVIDMSKLTHQESMDSELAKLHSACTEWGF 83

Query: 64  FQLVKHGVSDSLMERMKMETQKLFQLPIEEKKK 123
           FQLV HGVS SL+E MK++ Q+ F LP+EEKKK
Sbjct: 84  FQLVNHGVSSSLLEEMKIQVQEFFDLPVEEKKK 116

Query: 124  183
           
Sbjct: 144  116

Query: 184  243
           
Sbjct: 204  116

Query: 244  274
           
Sbjct: 264  116

[Close]

BLAST of CU087183 vs. NCBI nr
Match: gi|976917841|gb|KVI03152.1| (Non-heme dioxygenase N-terminal domain-containing protein [Cynara cardunculus var. scolymus])

HSP 1 Score: 102.1 bits (253), Expect = 6.2e-19
Identity = 46/87 (52.87%), Postives = 65/87 (74.71%), Query Frame = -3


Query: 4   KIPHRYIRPDLLHHSPIASAASQIPVIDMSNFRSNDTMDSELSRLHSACKNWGFFQLVKH 63
           ++PHRYIR +    + + S+  Q+P+I+M N  S D+ D EL +LH ACK+WGFFQL+ H
Sbjct: 41  EVPHRYIRAN--QDASVVSSLPQVPIINMENLSSTDSKDYELEKLHLACKDWGFFQLINH 100

Query: 64  GVSDSLMERMKMETQKLFQLPIEEKKK 123
           GVS SL+E++K ETQ+ F +P+EEKKK
Sbjct: 101 GVSCSLLEKVKQETQEFFNMPMEEKKK 125

Query: 124  183
           
Sbjct: 161  125

Query: 184  243
           
Sbjct: 221  125

Query: 244  265
           
Sbjct: 281  125

The following BLAST results are available for this feature:

BLAST of CU087183 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NCS1_COPJA	2.9e-16	44.71	S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1	[more]
SRG1_ARATH	4.9e-16	46.59	Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1	[more]
DIOX2_PAPSO	7.3e-12	43.01	Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DI...	[more]
DIOX3_PAPSO	1.6e-11	51.52	Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1	[more]
F6H2_ARATH	1.6e-11	36.79	Feruloyl CoA ortho-hydroxylase 2 OS=Arabidopsis thaliana GN=F6'H2 PE=1 SV=1	[more]

BLAST of CU087183 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067JV41_JATCU	1.3e-20	55.91	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27165 PE=3 SV=1	[more]
B9SR56_RICCO	8.7e-20	53.33	Leucoanthocyanidin dioxygenase, putative OS=Ricinus communis GN=RCOM_1181730 PE=...	[more]
A0A166CUN6_DAUCA	8.7e-20	55.81	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_005193 PE=4 SV=1	[more]
A0A118K1N5_CYNCS	8.7e-20	52.87	Non-heme dioxygenase N-terminal domain-containing protein OS=Cynara cardunculus ...	[more]
A0A067KKS4_JATCU	1.5e-19	55.56	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12167 PE=3 SV=1	[more]

BLAST of CU087183 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778695605\|ref\|XP_004146011.2\|	5.2e-42	96.70	PREDICTED: protein SRG1-like [Cucumis sativus]	[more]
gi\|659127618\|ref\|XP_008463796.1\|	2.7e-38	89.01	PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Cucumis melo]	[more]
gi\|747076446\|ref\|XP_011085296.1\|	5.6e-20	57.78	PREDICTED: protein SRG1-like [Sesamum indicum]	[more]
gi\|802753992\|ref\|XP_012088618.1\|	9.5e-20	55.91	PREDICTED: protein SRG1-like [Jatropha curcas]	[more]
gi\|976917841\|gb\|KVI03152.1\|	6.2e-19	52.87	Non-heme dioxygenase N-terminal domain-containing protein [Cynara cardunculus va...	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR026992	DIOX_N
IPR027443	IPNS-like

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G622820	Csa4G622820	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02MEL46	FKNP3UI02MEL46	EST
H0185761	H0185761	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026992	Non-haem dioxygenase N-terminal domain	PFAM	PF14226	DIOX_N	coord: 41..105 score: 2.4
IPR027443	Isopenicillin N synthase-like	GENE3D	G3DSA:2.60.120.330		coord: 31..104 score: 9.3
None	No IPR available	PANTHER	PTHR10209	OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN	coord: 37..105 score: 2.0
None	No IPR available	PANTHER	PTHR10209:SF130	SUBFAMILY NOT NAMED	coord: 37..105 score: 2.0
None	No IPR available	unknown	SSF51197	Clavaminate synthase-like	coord: 27..104 score: 3.02