CU087023 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU087023
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionChlorophyll a-b binding protein, chloroplastic
LocationChr4 : 23191235 .. 23191670 (+)
Sequence length369
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

GAATGATGAGTCCGTCACCAGAGAGATTGCAATGGCGCTAGTTCAGCCACACACTCCAGCTTCTTCAATTTCATCTTCATCCGCTTCATTGTTCGGAACTTATCTTCAACAATTCCGTCCGCTCACCACAACCCTTAATCTTCGAAGCAACCACTCTATCTCTCATCGTTCCACCTGCAGAGCTTCCTGGCAGGAGCTTGCAGGTGTTCTAATATTCTCTGCAATTCCTTTCACGGCGGTTAAAGCCATTGCTAATAGCCCCACTTGGAGGGGTCGCTCCAGAGACAATTGGAAAAGAAGAAAAATTCTGCCGTAGCCAACTCTTCCAAGTTCAAGGCTCTTGCTGAGGAGGCTAGAAAAGATAGCTTT
Homology
[Close]
BLAST of CU087023 vs. TrEMBL
Match: A0A0A0L3G2_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_4G664560 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 9.2e-29
Identity = 69/90 (76.67%), Postives = 71/90 (78.89%), Query Frame = 2 

Query: 32  MALVQPHTPXXXXXXXXXXLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 91
           MALVQPHTP          LFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL
Sbjct: 1   MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 60

Query: 92  IFSAIPFTAVKAIANSPTWRGRSRDNWKRR 151
           IFSAIPFTAVKAIANSP      R   K++
Sbjct: 61  IFSAIPFTAVKAIANSPLGGSLQRQLEKKK 90

Query: 152  211
           
Sbjct: 121  90

Query: 212  271
           
Sbjct: 181  90

Query: 272  302
           
Sbjct: 241  90

[Close]
BLAST of CU087023 vs. TrEMBL
Match: A0A0D2QHW9_GOSRA (Chlorophyll a-b binding protein, chloroplastic OS=Gossypium raimondii GN=B456_003G092700 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.6e-09
Identity = 37/64 (57.81%), Postives = 43/64 (67.19%), Query Frame = 2 

Query: 113 FRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPTWRGRSRDNW 172
           FRPLT     +S    S  ++CRASWQEL GVL+FSA+PFTAVKAIANSP      R   
Sbjct: 34  FRPLTKLTTAKS----SSFTSCRASWQELVGVLLFSAVPFTAVKAIANSPLGEALQRQLL 93

Query: 173 KRRK 232
           KR+K
Sbjct: 94  KRKK 93

Query: 233  292
           
Sbjct: 154  93

Query: 293  305
           
Sbjct: 214  93

[Close]
BLAST of CU087023 vs. TrEMBL
Match: A0A087HIX2_ARAAL (Chlorophyll a-b binding protein, chloroplastic OS=Arabis alpina GN=AALP_AA2G207800 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-08
Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = 2 

Query: 113 FRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPTWRGRSRDNW 172
           F  LT TL  +   +   RSTCRASWQELA VL+FSAIPFTAVKAIANS       R   
Sbjct: 69  FHSLTRTLVSKPRSTRRSRSTCRASWQELASVLVFSAIPFTAVKAIANSSLGESLRRKLE 128

Query: 173 KRRK 232
           +R+K
Sbjct: 129 ERKK 132

Query: 233  292
           
Sbjct: 189  132

Query: 293  305
           
Sbjct: 249  132

[Close]
BLAST of CU087023 vs. TrEMBL
Match: B9H5X9_POPTR (Chlorophyll a-b binding protein, chloroplastic OS=Populus trichocarpa GN=POPTR_0005s28000g PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.8e-08
Identity = 43/97 (44.33%), Postives = 52/97 (53.61%), Query Frame = 2 

Query: 26  IAMALVQPHTPXXXXXXXXXXLFGTYLQQFRPLTTTLNLRSNHSISHR---STCRASWQE 85
           +A+A+V PH                +  Q  P       RSN S S     S C+ASWQE
Sbjct: 5   LAVAVVHPHVSFSASSSSF------FAHQRVPRILLSKSRSNSSNSTSLPASICKASWQE 64

Query: 86  LAGVLIFSAIPFTAVKAIANSPTWRGRSRDNWKRRKI 145
           LAGV+IFSAIPFTAVKAIANSP      R   +R+K+
Sbjct: 65  LAGVVIFSAIPFTAVKAIANSPLGESLQRRLEERKKL 95

Query: 146  205
           
Sbjct: 125  95

Query: 206  265
           
Sbjct: 185  95

Query: 266  308
           
Sbjct: 245  95

[Close]
BLAST of CU087023 vs. TrEMBL
Match: D7UDH1_VITVI (Chlorophyll a-b binding protein, chloroplastic OS=Vitis vinifera GN=VIT_18s0122g00430 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.9e-08
Identity = 35/57 (61.40%), Postives = 40/57 (70.18%), Query Frame = 2 

Query: 92  FGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVLIFSAIPFTAVKAIANSP 151
           FG Y  +     +    R+ +S S  S C+ASWQELAGVLIFSAIPFTAVKAIANSP
Sbjct: 17  FGGYRHRLCSKISWPKSRNVNSTSTYSGCKASWQELAGVLIFSAIPFTAVKAIANSP 73

Query: 152  211
           
Sbjct: 77   73

Query: 212  263
           
Sbjct: 137  73

[Close]
BLAST of CU087023 vs. NCBI nr
Match: gi|659105213|ref|XP_008453033.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X2 [Cucumis melo])

HSP 1 Score: 134.4 bits (337), Expect = 1.3e-28
Identity = 67/94 (71.28%), Postives = 72/94 (76.60%), Query Frame = 2 

Query: 23  EIAMALVQPHTPXXXXXXXXXXLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELA 82
           EI MAL+QPHTP           +GTYLQQ RPLTTTLNLRSNHSISHRSTCRASWQELA
Sbjct: 7   EIVMALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELA 66

Query: 83  GVLIFSAIPFTAVKAIANSPTWRGRSRDNWKRRK 142
           GVLIFSA+PFTAVKAIANSP      R   K++K
Sbjct: 67  GVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKK 100

Query: 143  202
           
Sbjct: 127  100

Query: 203  262
           
Sbjct: 187  100

Query: 263  305
           
Sbjct: 247  100

[Close]
BLAST of CU087023 vs. NCBI nr
Match: gi|659105211|ref|XP_008453032.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis melo])

HSP 1 Score: 134.4 bits (337), Expect = 1.3e-28
Identity = 67/94 (71.28%), Postives = 72/94 (76.60%), Query Frame = 2 

Query: 23  EIAMALVQPHTPXXXXXXXXXXLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELA 82
           EI MAL+QPHTP           +GTYLQQ RPLTTTLNLRSNHSISHRSTCRASWQELA
Sbjct: 7   EIVMALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELA 66

Query: 83  GVLIFSAIPFTAVKAIANSPTWRGRSRDNWKRRK 142
           GVLIFSA+PFTAVKAIANSP      R   K++K
Sbjct: 67  GVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKK 100

Query: 143  202
           
Sbjct: 127  100

Query: 203  262
           
Sbjct: 187  100

Query: 263  305
           
Sbjct: 247  100

[Close]
BLAST of CU087023 vs. NCBI nr
Match: gi|659105215|ref|XP_008453034.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type I, chloroplastic isoform X3 [Cucumis melo])

HSP 1 Score: 134.4 bits (337), Expect = 1.3e-28
Identity = 67/94 (71.28%), Postives = 72/94 (76.60%), Query Frame = 2 

Query: 23  EIAMALVQPHTPXXXXXXXXXXLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELA 82
           EI MAL+QPHTP           +GTYLQQ RPLTTTLNLRSNHSISHRSTCRASWQELA
Sbjct: 7   EIVMALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELA 66

Query: 83  GVLIFSAIPFTAVKAIANSPTWRGRSRDNWKRRK 142
           GVLIFSA+PFTAVKAIANSP      R   K++K
Sbjct: 67  GVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKK 100

Query: 143  202
           
Sbjct: 127  100

Query: 203  262
           
Sbjct: 187  100

Query: 263  305
           
Sbjct: 247  100

[Close]
BLAST of CU087023 vs. NCBI nr
Match: gi|659105217|ref|XP_008453035.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type I, chloroplastic isoform X4 [Cucumis melo])

HSP 1 Score: 134.4 bits (337), Expect = 1.3e-28
Identity = 67/94 (71.28%), Postives = 72/94 (76.60%), Query Frame = 2 

Query: 23  EIAMALVQPHTPXXXXXXXXXXLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELA 82
           EI MAL+QPHTP           +GTYLQQ RPLTTTLNLRSNHSISHRSTCRASWQELA
Sbjct: 7   EIVMALIQPHTPASSISSSSASFYGTYLQQLRPLTTTLNLRSNHSISHRSTCRASWQELA 66

Query: 83  GVLIFSAIPFTAVKAIANSPTWRGRSRDNWKRRK 142
           GVLIFSA+PFTAVKAIANSP      R   K++K
Sbjct: 67  GVLIFSAVPFTAVKAIANSPLGESLQRQLEKKKK 100

Query: 143  202
           
Sbjct: 127  100

Query: 203  262
           
Sbjct: 187  100

Query: 263  305
           
Sbjct: 247  100

[Close]
BLAST of CU087023 vs. NCBI nr
Match: gi|778697301|ref|XP_011654292.1| (PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 134.0 bits (336), Expect = 1.7e-28
Identity = 69/90 (76.67%), Postives = 71/90 (78.89%), Query Frame = 2 

Query: 32  MALVQPHTPXXXXXXXXXXLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 91
           MALVQPHTP          LFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL
Sbjct: 1   MALVQPHTPASSISSSSASLFGTYLQQFRPLTTTLNLRSNHSISHRSTCRASWQELAGVL 60

Query: 92  IFSAIPFTAVKAIANSPTWRGRSRDNWKRR 151
           IFSAIPFTAVKAIANSP      R   K++
Sbjct: 61  IFSAIPFTAVKAIANSPLGGSLQRQLEKKK 90

Query: 152  211
           
Sbjct: 121  90

Query: 212  271
           
Sbjct: 181  90

Query: 272  302
           
Sbjct: 241  90

The following BLAST results are available for this feature:
BLAST of CU087023 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3G2_CUCSA9.2e-2976.67Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_4G66456... [more]
A0A0D2QHW9_GOSRA3.6e-0957.81Chlorophyll a-b binding protein, chloroplastic OS=Gossypium raimondii GN=B456_00... [more]
A0A087HIX2_ARAAL1.1e-0857.81Chlorophyll a-b binding protein, chloroplastic OS=Arabis alpina GN=AALP_AA2G2078... [more]
B9H5X9_POPTR6.8e-0844.33Chlorophyll a-b binding protein, chloroplastic OS=Populus trichocarpa GN=POPTR_0... [more]
D7UDH1_VITVI8.9e-0861.40Chlorophyll a-b binding protein, chloroplastic OS=Vitis vinifera GN=VIT_18s0122g... [more]
BLAST of CU087023 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659105213|ref|XP_008453033.1|1.3e-2871.28PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X2 [Cucumis m... [more]
gi|659105211|ref|XP_008453032.1|1.3e-2871.28PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis m... [more]
gi|659105215|ref|XP_008453034.1|1.3e-2871.28PREDICTED: chlorophyll a-b binding protein of LHCII type I, chloroplastic isofor... [more]
gi|659105217|ref|XP_008453035.1|1.3e-2871.28PREDICTED: chlorophyll a-b binding protein of LHCII type I, chloroplastic isofor... [more]
gi|778697301|ref|XP_011654292.1|1.7e-2876.67PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like isoform X2 [Cucu... [more]
Annotated Terms
The following terms have been associated with this transcribed_cluster:
Vocabulary: INTERPRO
TermDefinition
IPR001344Chloro_AB-bd_pln
Vocabulary: Biological Process
TermDefinition
GO:0009765photosynthesis, light harvesting
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcribed_cluster is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009765 photosynthesis, light harvesting
cellular_component GO:0016020 membrane
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa4G664560Csa4G664560gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
FKNP3UI02M4NC7FKNP3UI02M4NC7EST
G0074165G0074165EST
H0164330H0164330EST


InterPro
Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001344Chlorophyll A-B binding protein, plantPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 53..113
score: 1.1
NoneNo IPR availablePANTHERPTHR21649:SF24CHLOROPHYLL A-B BINDING FAMILY PROTEINcoord: 53..113
score: 1.1