CU086867 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU086867
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr3 : 12779242 .. 12779886 (+)
Sequence length	649

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TGTATTACGGCGGGGTGGTAATAAGAATCGGATGATCGGTAACGTGGTTCTCGGACAGTTACTTTAACTTCGATTTTCCCTTGCGGCCTACCGGAGGGCCGTTCAATTGGAGAGTTCGTTGAGAGCTTTCGCCAAGTCCAACATCGTCGATGAGCTCCGCAAGGGGAAGTCGAGCGGAGCCAATCAACGGCTTGGTGTCTTCATCAGCGCCGACGACATGAACGACGTCGATATGGAGCGTGGAATCCTCGATCGATGAGAAGAAGGGAATGACGAGCGTTTCATCCCAAAAGGGCGATGTATCGCCTTGATTGTCGACCTTTGTAGACGATTTTTGCTTGGGATCGATCCAAACGACGGCGTAGGGCTTGAGAGTGCCGTACTTCCAGTTGATGTTCTTGAGATCTTTAGCGGACTGAATTTTGAGTTCCAATTCGTAGCGAGAGGCCATCGTGGGTGCCGGAAAGAGCAGTTTAAAGGGTGAATTGAGAGATGAAAATGGGATACCTAATGAGTTGTTTCCGGTAAAGACGTAGCTAATTCTAACATTTATAGGAGACACGTAGGTACTAGATGATAGTGGTTTGGAAACTAACCGTGGCTTTGTAACTTAATTACATAAATGGACATTACACGTGTCATTTTGGTT

Library


Library category	ESTs
fruit (8DPP) library	1
gynoecious flower library	4
hermaphrodite flower library	5

Homology

[Close]

BLAST of CU086867 vs. TrEMBL
Match: A0A0A0LBH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G183350 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 2.3e-59
Identity = 117/119 (98.32%), Postives = 117/119 (98.32%), Query Frame = -1


Query: 95  MASRYELELKIQSAKDLKNINWKYGTLKPYAVVWIDPKQKSSTKVDNQGDTSPFWDETLV 154
           MASRYELELKIQSAKDLKNINWKYGTLKPYAVVWIDPKQKSSTKVDNQGDTSPFWDETLV
Sbjct: 1   MASRYELELKIQSAKDLKNINWKYGTLKPYAVVWIDPKQKSSTKVDNQGDTSPFWDETLV 60

Query: 155 IPFFSSIEDSTLHIDVVHVVGADEDTKPLIGSARLPLAELIDDVGLGESSQRTLQLNGP 214
           IPFFSSIEDSTLHIDVVHVVGADEDTKPLIGSARLPLAELIDDVGLGESSQRTLQL  P
Sbjct: 61  IPFFSSIEDSTLHIDVVHVVGADEDTKPLIGSARLPLAELIDDVGLGESSQRTLQLKRP 119

Query: 215  274
           
Sbjct: 121  119

Query: 275  334
           
Sbjct: 181  119

Query: 335  394
           
Sbjct: 241  119

Query: 395  452
           
Sbjct: 301  119

[Close]

BLAST of CU086867 vs. TrEMBL
Match: A0A0A0LBH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G183350 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.1e-07
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = -3


Query: 12  IERPSGRPQGKIEVKVTVREPRYRSSDSYYHP 71
           ++RPSGRPQGKIEVKVTVREPRYRSSDSYY P
Sbjct: 116 LKRPSGRPQGKIEVKVTVREPRYRSSDSYYTP 147

Query: 72   108
           
Sbjct: 176  147

HSP 2 Score: 174.1 bits (440), Expect = 1.9e-40
Identity = 77/119 (64.71%), Postives = 100/119 (84.03%), Query Frame = -1


Query: 95  MASRYELELKIQSAKDLKNINWKYGTLKPYAVVWIDPKQKSSTKVDNQGDTSPFWDETLV 154
           M SRYE+E+KI SAKDLKNINW+YG LKPYAVVW+DP  K ST+VD  GDTSP+W++ LV
Sbjct: 1   MGSRYEVEVKITSAKDLKNINWRYGPLKPYAVVWVDPNAKCSTRVDEDGDTSPYWNDKLV 60

Query: 155 IPFFSSIEDSTLHIDVVHVVGADEDTKPLIGSARLPLAELIDDVGLGESSQRTLQLNGP 214
           IP +S I++S L+ID+VH VGA+EDTKPLIGSA++PL+E++++ G+G   +RTLQL  P
Sbjct: 61  IPLYSPIDESVLYIDMVHAVGAEEDTKPLIGSAKIPLSEVVEEAGVGGEVERTLQLKRP 119

Query: 215  274
           
Sbjct: 121  119

Query: 275  334
           
Sbjct: 181  119

Query: 335  394
           
Sbjct: 241  119

Query: 395  452
           
Sbjct: 301  119

[Close]

BLAST of CU086867 vs. TrEMBL
Match: K4C4Y0_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.6e-05
Identity = 22/32 (68.75%), Postives = 30/32 (93.75%), Query Frame = -3


Query: 12  IERPSGRPQGKIEVKVTVREPRYRSSDSYYHP 71
           ++RPSGRPQGK++V+VTVR+PRYR+ D+YY P
Sbjct: 116 LKRPSGRPQGKVKVQVTVRDPRYRARDAYYAP 147

Query: 72   108
           
Sbjct: 176  147

HSP 2 Score: 171.4 bits (433), Expect = 1.2e-39
Identity = 77/119 (64.71%), Postives = 98/119 (82.35%), Query Frame = -1


Query: 95  MASRYELELKIQSAKDLKNINWKYGTLKPYAVVWIDPKQKSSTKVDNQGDTSPFWDETLV 154
           M SRYE+E+KI SAKDLKNINW+YG LKPYAVVW+DP  K STKVD  GDTSP+W++ L+
Sbjct: 1   MGSRYEVEVKITSAKDLKNINWRYGPLKPYAVVWVDPNSKCSTKVDEDGDTSPYWNDKLL 60

Query: 155 IPFFSSIEDSTLHIDVVHVVGADEDTKPLIGSARLPLAELIDDVGLGESSQRTLQLNGP 214
           IP  S I++S L+ID+VH VGA+EDTKPLIGSA++ L+E++D+ G+G   +RTLQL  P
Sbjct: 61  IPLNSPIDESVLYIDIVHAVGAEEDTKPLIGSAKISLSEVVDEAGVGGEVERTLQLKRP 119

Query: 215  274
           
Sbjct: 121  119

Query: 275  334
           
Sbjct: 181  119

Query: 335  394
           
Sbjct: 241  119

Query: 395  452
           
Sbjct: 301  119

[Close]

BLAST of CU086867 vs. TrEMBL
Match: A0A0V0HFV8_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.3e-05
Identity = 23/32 (71.88%), Postives = 30/32 (93.75%), Query Frame = -3


Query: 12  IERPSGRPQGKIEVKVTVREPRYRSSDSYYHP 71
           ++RPSGRPQGK+EV+VTVR+PRYR+ D+YY P
Sbjct: 116 LKRPSGRPQGKVEVQVTVRDPRYRARDAYYAP 147

Query: 72   108
           
Sbjct: 176  147

HSP 2 Score: 170.6 bits (431), Expect = 2.0e-39
Identity = 77/119 (64.71%), Postives = 97/119 (81.51%), Query Frame = -1


Query: 95  MASRYELELKIQSAKDLKNINWKYGTLKPYAVVWIDPKQKSSTKVDNQGDTSPFWDETLV 154
           M SRYE+E+KI SAKDLKNINW+YG LKPYAVVW+DP  K STKVD  GDTSP+W + L+
Sbjct: 1   MGSRYEVEVKITSAKDLKNINWRYGPLKPYAVVWVDPNSKCSTKVDEDGDTSPYWTDKLL 60

Query: 155 IPFFSSIEDSTLHIDVVHVVGADEDTKPLIGSARLPLAELIDDVGLGESSQRTLQLNGP 214
           IP  S I++S L+ID+VH VGA+EDTKPLIGSA++ L+E++D+ G+G   +RTLQL  P
Sbjct: 61  IPLNSPIDESVLYIDIVHAVGAEEDTKPLIGSAKISLSEVVDEAGVGGEVERTLQLKRP 119

Query: 215  274
           
Sbjct: 121  119

Query: 275  334
           
Sbjct: 181  119

Query: 335  394
           
Sbjct: 241  119

Query: 395  452
           
Sbjct: 301  119

[Close]

BLAST of CU086867 vs. TrEMBL
Match: M1CXL8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400029920 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.3e-05
Identity = 23/32 (71.88%), Postives = 30/32 (93.75%), Query Frame = -3


Query: 12  IERPSGRPQGKIEVKVTVREPRYRSSDSYYHP 71
           ++RPSGRPQGK+EV+VTVR+PRYR+ D+YY P
Sbjct: 116 LKRPSGRPQGKVEVQVTVRDPRYRARDAYYAP 147

Query: 72   108
           
Sbjct: 176  147

HSP 2 Score: 166.4 bits (420), Expect = 3.9e-38
Identity = 80/119 (67.23%), Postives = 97/119 (81.51%), Query Frame = -1


Query: 95  MASRYELELKIQSAKDLKNINWKYGTLKPYAVVWIDPKQKSSTKVDNQGDTSPFWDETLV 154
           M SRYE+E+ I SAKDLKN+NW++G LKPYAVVW+DPK K ST+VD++GDTSP+W+ETLV
Sbjct: 1   MGSRYEVEVAITSAKDLKNVNWRHGPLKPYAVVWVDPKAKCSTRVDDEGDTSPYWEETLV 60

Query: 155 IPFFSSIEDSTLHIDVVHVVGADEDTKPLIGSARLPLAELIDDVGLGESSQRTLQLNGP 214
           IPF S IEDSTL IDVVH   A EDTKPLIGSARL L +++D+ GLG   +R L+L  P
Sbjct: 61  IPFDSPIEDSTLLIDVVHAKAA-EDTKPLIGSARLRLIDVVDEAGLGRRVERKLELKRP 118

Query: 215  274
           
Sbjct: 121  118

Query: 275  334
           
Sbjct: 181  118

Query: 335  394
           
Sbjct: 241  118

Query: 395  452
           
Sbjct: 301  118

[Close]

BLAST of CU086867 vs. NCBI nr
Match: gi|778679668|ref|XP_011651176.1| (PREDICTED: uncharacterized protein LOC101213996 [Cucumis sativus])

HSP 1 Score: 238.8 bits (608), Expect = 8.8e-60
Identity = 117/119 (98.32%), Postives = 117/119 (98.32%), Query Frame = -1


Query: 95  MASRYELELKIQSAKDLKNINWKYGTLKPYAVVWIDPKQKSSTKVDNQGDTSPFWDETLV 154
           MASRYELELKIQSAKDLKNINWKYGTLKPYAVVWIDPKQKSSTKVDNQGDTSPFWDETLV
Sbjct: 1   MASRYELELKIQSAKDLKNINWKYGTLKPYAVVWIDPKQKSSTKVDNQGDTSPFWDETLV 60

Query: 155 IPFFSSIEDSTLHIDVVHVVGADEDTKPLIGSARLPLAELIDDVGLGESSQRTLQLNGP 214
           IPFFSSIEDSTLHIDVVHVVGADEDTKPLIGSARLPLAELIDDVGLGESSQRTLQL  P
Sbjct: 61  IPFFSSIEDSTLHIDVVHVVGADEDTKPLIGSARLPLAELIDDVGLGESSQRTLQLKRP 119

Query: 215  274
           
Sbjct: 121  119

Query: 275  334
           
Sbjct: 181  119

Query: 335  394
           
Sbjct: 241  119

Query: 395  452
           
Sbjct: 301  119

[Close]

BLAST of CU086867 vs. NCBI nr
Match: gi|659077556|ref|XP_008439269.1| (PREDICTED: zinc finger matrin-type protein CG9776 [Cucumis melo])

HSP 1 Score: 226.1 bits (575), Expect = 5.9e-56
Identity = 109/119 (91.60%), Postives = 115/119 (96.64%), Query Frame = -1


Query: 95  MASRYELELKIQSAKDLKNINWKYGTLKPYAVVWIDPKQKSSTKVDNQGDTSPFWDETLV 154
           MASRYELELKIQSA+DLKNINWKYGTLKPYAVVWIDP+QKSSTKVD +GDTSP+WDETLV
Sbjct: 1   MASRYELELKIQSARDLKNINWKYGTLKPYAVVWIDPQQKSSTKVDAEGDTSPYWDETLV 60

Query: 155 IPFFSSIEDSTLHIDVVHVVGADEDTKPLIGSARLPLAELIDDVGLGESSQRTLQLNGP 214
           IPF SSIEDSTLHIDVVHVVGADEDTKPLIGSARLPLAE++DDVGLGESSQRTLQL  P
Sbjct: 61  IPFSSSIEDSTLHIDVVHVVGADEDTKPLIGSARLPLAEVVDDVGLGESSQRTLQLKRP 119

Query: 215  274
           
Sbjct: 121  119

Query: 275  334
           
Sbjct: 181  119

Query: 335  394
           
Sbjct: 241  119

Query: 395  452
           
Sbjct: 301  119

[Close]

BLAST of CU086867 vs. NCBI nr
Match: gi|970032767|ref|XP_015077690.1| (PREDICTED: uncharacterized protein LOC107021527 [Solanum pennellii])

HSP 1 Score: 176.8 bits (447), Expect = 4.1e-41
Identity = 78/119 (65.55%), Postives = 99/119 (83.19%), Query Frame = -1


Query: 95  MASRYELELKIQSAKDLKNINWKYGTLKPYAVVWIDPKQKSSTKVDNQGDTSPFWDETLV 154
           M SRYE+E+KI SAKDLKNINW+YG LKPYAVVW+DP  K STKVD  GDTSP+W++ LV
Sbjct: 1   MGSRYEVEVKITSAKDLKNINWRYGPLKPYAVVWVDPNAKCSTKVDEDGDTSPYWNDKLV 60

Query: 155 IPFFSSIEDSTLHIDVVHVVGADEDTKPLIGSARLPLAELIDDVGLGESSQRTLQLNGP 214
           IP +S I++S L+ID+VH VGA+EDTKPLIGSA++PL+E++D+ G+G   +RTL L  P
Sbjct: 61  IPLYSPIDESVLYIDMVHAVGAEEDTKPLIGSAKIPLSEVVDEAGVGGEVERTLHLKRP 119

Query: 215  274
           
Sbjct: 121  119

Query: 275  334
           
Sbjct: 181  119

Query: 335  394
           
Sbjct: 241  119

Query: 395  452
           
Sbjct: 301  119

[Close]

BLAST of CU086867 vs. NCBI nr
Match: gi|460390195|ref|XP_004240724.1| (PREDICTED: uncharacterized protein LOC101263030 [Solanum lycopersicum])

HSP 1 Score: 176.0 bits (445), Expect = 7.0e-41
Identity = 77/119 (64.71%), Postives = 100/119 (84.03%), Query Frame = -1


Query: 95  MASRYELELKIQSAKDLKNINWKYGTLKPYAVVWIDPKQKSSTKVDNQGDTSPFWDETLV 154
           M SRYE+E+KI SAKDLKNINW+YG LKPYAVVW+DP  K ST+VD  GDTSP+W++ LV
Sbjct: 1   MGSRYEVEVKITSAKDLKNINWRYGPLKPYAVVWVDPNAKCSTRVDEDGDTSPYWNDKLV 60

Query: 155 IPFFSSIEDSTLHIDVVHVVGADEDTKPLIGSARLPLAELIDDVGLGESSQRTLQLNGP 214
           IP +S I++S L+ID+VH VGA+EDTKPLIGSA++PL+E++++ G+G   +RTLQL  P
Sbjct: 61  IPLYSPIDESVLYIDMVHAVGAEEDTKPLIGSAKIPLSEVVEEAGVGGEVERTLQLKRP 119

Query: 215  274
           
Sbjct: 121  119

Query: 275  334
           
Sbjct: 181  119

Query: 335  394
           
Sbjct: 241  119

Query: 395  452
           
Sbjct: 301  119

[Close]

BLAST of CU086867 vs. NCBI nr
Match: gi|565395404|ref|XP_006363329.1| (PREDICTED: protein SRC2-like [Solanum tuberosum])

HSP 1 Score: 172.6 bits (436), Expect = 7.7e-40
Identity = 77/119 (64.71%), Postives = 97/119 (81.51%), Query Frame = -1


Query: 95  MASRYELELKIQSAKDLKNINWKYGTLKPYAVVWIDPKQKSSTKVDNQGDTSPFWDETLV 154
           M SRYE+E+KI SAKDLKNINW+YG LKPYAVVW+DP  K STKVD  GDTSP+W + L+
Sbjct: 1   MGSRYEVEVKITSAKDLKNINWRYGPLKPYAVVWVDPNSKCSTKVDEDGDTSPYWTDKLL 60

Query: 155 IPFFSSIEDSTLHIDVVHVVGADEDTKPLIGSARLPLAELIDDVGLGESSQRTLQLNGP 214
           IP  S I++S L+ID+VH VGA+EDTKPLIGSA++ L+E++D+ G+G   +RTLQL  P
Sbjct: 61  IPLNSPIDESVLYIDIVHAVGAEEDTKPLIGSAKISLSEVVDEAGVGGEVERTLQLKRP 119

Query: 215  274
           
Sbjct: 121  119

Query: 275  334
           
Sbjct: 181  119

Query: 335  394
           
Sbjct: 241  119

Query: 395  452
           
Sbjct: 301  119

The following BLAST results are available for this feature:

BLAST of CU086867 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBH6_CUCSA	2.3e-59	98.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G183350 PE=4 SV=1	[more]
A0A0A0LBH6_CUCSA	2.1e-07	90.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G183350 PE=4 SV=1	[more]
K4C4Y0_SOLLC	9.6e-05	68.75	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A0V0HFV8_SOLCH	3.3e-05	71.88	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]
M1CXL8_SOLTU	3.3e-05	71.88	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400029920 PE=4 SV=1	[more]

BLAST of CU086867 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778679668\|ref\|XP_011651176.1\|	8.8e-60	98.32	PREDICTED: uncharacterized protein LOC101213996 [Cucumis sativus]	[more]
gi\|659077556\|ref\|XP_008439269.1\|	5.9e-56	91.60	PREDICTED: zinc finger matrin-type protein CG9776 [Cucumis melo]	[more]
gi\|970032767\|ref\|XP_015077690.1\|	4.1e-41	65.55	PREDICTED: uncharacterized protein LOC107021527 [Solanum pennellii]	[more]
gi\|460390195\|ref\|XP_004240724.1\|	7.0e-41	64.71	PREDICTED: uncharacterized protein LOC101263030 [Solanum lycopersicum]	[more]
gi\|565395404\|ref\|XP_006363329.1\|	7.7e-40	64.71	PREDICTED: protein SRC2-like [Solanum tuberosum]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR000008	C2_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa3G183350	Csa3G183350	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02NK8E9	FKNP3UI02NK8E9	EST
G0039111	G0039111	EST
G0058287	G0058287	EST
G0160348	G0160348	EST
G0189666	G0189666	EST
H0002952	H0002952	EST
H0046406	H0046406	EST
H0054794	H0054794	EST
H0094634	H0094634	EST
H0174620	H0174620	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000008	C2 domain	GENE3D	G3DSA:2.60.40.150		coord: 5..135 score: 5.5
IPR000008	C2 domain	PFAM	PF00168	C2	coord: 6..101 score: 4.4
IPR000008	C2 domain	SMART	SM00239	C2_3c	coord: 6..109 score: 6.
IPR000008	C2 domain	PROFILE	PS50004	C2	coord: 1..94 score: 10
IPR000008	C2 domain	unknown	SSF49562	C2 domain (Calcium/lipid-binding domain, CaLB)	coord: 3..134 score: 6.1
None	No IPR available	PANTHER	PTHR32246	FAMILY NOT NAMED	coord: 1..147 score: 4.5
None	No IPR available	PANTHER	PTHR32246:SF17	SUBFAMILY NOT NAMED	coord: 1..147 score: 4.5