CU085994 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU085994
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr4 : 19560532 .. 19561860 (+)
Sequence length	256

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CACCTTAGGCCAAACAGGAAGAATCCCTGGATATTCTTTTGGTATATGGAATTTATGACTTTTTTTGCTATATCCCACCTCCTTTTTGCTTCGAGGACACCACCAACCATAGCGAGAGGAAATGCCTCTTGTCCATCTTCACCAGCTAGGCCGAGTCTTTGAATTACAGCTCTCACATTCAAAGCCAGCTCTTCAACTGAATCGAGGAGGGTGTTGTTAGCAACCTCATCACCTGCCTCAGCACATGCTACAACAA

Library


Library category	ESTs
fruit (8DPP) library	1
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU085994 vs. TrEMBL
Match: A0A0A0KZR9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G616770 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 7.0e-28
Identity = 67/70 (95.71%), Postives = 68/70 (97.14%), Query Frame = -3


Query: 45  VVACAEAGDEVANNTLLDSVEELALNVRAVIQRLGLAGEDGQEAFPLAMVGGVLEAKRRW 104
           VVACAEAGDEVANN LLDSVEELAL+VRAVIQRLGLAGEDGQEAFPL MVGGVLEAKRRW
Sbjct: 38  VVACAEAGDEVANNILLDSVEELALSVRAVIQRLGLAGEDGQEAFPLVMVGGVLEAKRRW 97

Query: 105 DIAKKVINSI 164
           DIAKKVINSI
Sbjct: 98  DIAKKVINSI 107

Query: 165  224
           
Sbjct: 158  107

Query: 225  255
           
Sbjct: 218  107

[Close]

BLAST of CU085994 vs. TrEMBL
Match: A0A0A0KZR9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G616770 PE=4 SV=1)

HSP 1 Score: 33.5 bits (75), Expect = 1.5e+02
Identity = 13/14 (92.86%), Postives = 13/14 (92.86%), Query Frame = -2


Query: 4   IPKEYPGILPVWPK 46
           I KEYPGILPVWPK
Sbjct: 107 ISKEYPGILPVWPK 120

HSP 2 Score: 108.2 bits (269), Expect = 4.9e-21
Identity = 52/72 (72.22%), Postives = 61/72 (84.72%), Query Frame = -3


Query: 39  VVACAEAGDEVANNTLLDSVEELALNVRAVIQRLGLAGEDGQEAFPLAMVGGVLEAKRRW 98
           VV+CAEAGDEVAN  L  SVEELAL+V+AV+QRLGL GEDG  +FPL MVGGVLEA +RW
Sbjct: 245 VVSCAEAGDEVANKILQVSVEELALSVKAVVQRLGLCGEDGNSSFPLVMVGGVLEANKRW 304

Query: 99  DIAKKVINSIYQ 158
           DI K+V+N IY+
Sbjct: 305 DIGKEVVNCIYR 316

Query: 159  218
           
Sbjct: 365  316

Query: 219  255
           
Sbjct: 425  316

[Close]

BLAST of CU085994 vs. TrEMBL
Match: A0A059DD75_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A00888 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-20
Identity = 53/79 (67.09%), Postives = 65/79 (82.28%), Query Frame = -3


Query: 18  VVACAEAGDEVANNTLLDSVEELALNVRAVIQRLGLAGEDGQEAFPLAMVGGVLEAKRRW 77
           VV+CAEAGDEVAN  L +SV+ELAL+V+AV++RL L GEDG+++FPL MVGGVLEAK+RW
Sbjct: 246 VVSCAEAGDEVANRILFESVQELALSVKAVVERLRLCGEDGKDSFPLVMVGGVLEAKKRW 305

Query: 78  DIAKKVINSIYQKNIQGFF 137
           DI K+VIN I  K   G F
Sbjct: 306 DIGKEVINCI-SKEFPGVF 323

Query: 138  197
           
Sbjct: 366  323

Query: 198  255
           
Sbjct: 426  323

[Close]

BLAST of CU085994 vs. TrEMBL
Match: E0CTZ3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g01190 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.8e-20
Identity = 50/72 (69.44%), Postives = 62/72 (86.11%), Query Frame = -3


Query: 39  VVACAEAGDEVANNTLLDSVEELALNVRAVIQRLGLAGEDGQEAFPLAMVGGVLEAKRRW 98
           VV+CA+AGDEVAN  LL+SVEELA +V+AV+QRLGL GEDG+ +FPL MVGGVLEA + W
Sbjct: 247 VVSCADAGDEVANKILLESVEELASSVKAVVQRLGLCGEDGKGSFPLVMVGGVLEANKTW 306

Query: 99  DIAKKVINSIYQ 158
           DI K+V+N IY+
Sbjct: 307 DIGKEVVNCIYK 318

Query: 159  218
           
Sbjct: 367  318

Query: 219  255
           
Sbjct: 427  318

[Close]

BLAST of CU085994 vs. TrEMBL
Match: A0A067E0P6_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0175272mg PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.4e-20
Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = -3


Query: 45  VVACAEAGDEVANNTLLDSVEELALNVRAVIQRLGLAGEDGQEAFPLAMVGGVLEAKRRW 104
           VV+CAEAGDEVAN  L DSVEELAL+V+AV+QRL L+GEDG+ +FPL MVGGVLEA RRW
Sbjct: 125 VVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRW 184

Query: 105 DIAKKVINSI 164
           DI ++V+  I
Sbjct: 185 DIGREVVKCI 194

Query: 165  224
           
Sbjct: 245  194

Query: 225  255
           
Sbjct: 305  194

[Close]

BLAST of CU085994 vs. NCBI nr
Match: gi|449463605|ref|XP_004149522.1| (PREDICTED: LOW QUALITY PROTEIN: N-acetyl-D-glucosamine kinase-like [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 1.3e-27
Identity = 67/70 (95.71%), Postives = 68/70 (97.14%), Query Frame = -3


Query: 45  VVACAEAGDEVANNTLLDSVEELALNVRAVIQRLGLAGEDGQEAFPLAMVGGVLEAKRRW 104
           VVACAEAGDEVANN LLDSVEELAL+VRAVIQRLGLAGEDGQEAFPL MVGGVLEAKRRW
Sbjct: 244 VVACAEAGDEVANNILLDSVEELALSVRAVIQRLGLAGEDGQEAFPLVMVGGVLEAKRRW 303

Query: 105 DIAKKVINSI 164
           DIAKKVINSI
Sbjct: 304 DIAKKVINSI 313

Query: 165  224
           
Sbjct: 364  313

Query: 225  255
           
Sbjct: 424  313

[Close]

BLAST of CU085994 vs. NCBI nr
Match: gi|700199800|gb|KGN54958.1| (hypothetical protein Csa_4G616770 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 1.3e-27
Identity = 67/70 (95.71%), Postives = 68/70 (97.14%), Query Frame = -3


Query: 45  VVACAEAGDEVANNTLLDSVEELALNVRAVIQRLGLAGEDGQEAFPLAMVGGVLEAKRRW 104
           VVACAEAGDEVANN LLDSVEELAL+VRAVIQRLGLAGEDGQEAFPL MVGGVLEAKRRW
Sbjct: 38  VVACAEAGDEVANNILLDSVEELALSVRAVIQRLGLAGEDGQEAFPLVMVGGVLEAKRRW 97

Query: 105 DIAKKVINSI 164
           DIAKKVINSI
Sbjct: 98  DIAKKVINSI 107

Query: 165  224
           
Sbjct: 158  107

Query: 225  255
           
Sbjct: 218  107

[Close]

BLAST of CU085994 vs. NCBI nr
Match: gi|659129372|ref|XP_008464652.1| (PREDICTED: N-acetyl-D-glucosamine kinase-like [Cucumis melo])

HSP 1 Score: 129.4 bits (324), Expect = 2.9e-27
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = -3


Query: 45  VVACAEAGDEVANNTLLDSVEELALNVRAVIQRLGLAGEDGQEAFPLAMVGGVLEAKRRW 104
           VVACAEAGDEVANN LLDSVEELAL+V+AVIQRLGLAGEDGQEAFPL MVGGVLEAKRRW
Sbjct: 244 VVACAEAGDEVANNILLDSVEELALSVKAVIQRLGLAGEDGQEAFPLVMVGGVLEAKRRW 303

Query: 105 DIAKKVINSI 164
           DIAKKVINSI
Sbjct: 304 DIAKKVINSI 313

Query: 165  224
           
Sbjct: 364  313

Query: 225  255
           
Sbjct: 424  313

[Close]

BLAST of CU085994 vs. NCBI nr
Match: gi|223539263|gb|EEF40856.1| (N-acetylglucosamine kinase, putative [Ricinus communis])

HSP 1 Score: 107.8 bits (268), Expect = 9.1e-21
Identity = 52/72 (72.22%), Postives = 61/72 (84.72%), Query Frame = -3


Query: 39  VVACAEAGDEVANNTLLDSVEELALNVRAVIQRLGLAGEDGQEAFPLAMVGGVLEAKRRW 98
           VV+CAEAGDEVAN  L  SVEELAL+V+AV+QRLGL GEDG  +FPL MVGGVLEA +RW
Sbjct: 245 VVSCAEAGDEVANKILQVSVEELALSVKAVVQRLGLCGEDGNSSFPLVMVGGVLEANKRW 304

Query: 99  DIAKKVINSIYQ 158
           DI K+V+N IY+
Sbjct: 305 DIGKEVVNCIYR 316

Query: 159  218
           
Sbjct: 365  316

Query: 219  255
           
Sbjct: 425  316

[Close]

BLAST of CU085994 vs. NCBI nr
Match: gi|1000960325|ref|XP_015576283.1| (PREDICTED: N-acetyl-D-glucosamine kinase [Ricinus communis])

HSP 1 Score: 107.8 bits (268), Expect = 9.1e-21
Identity = 52/72 (72.22%), Postives = 61/72 (84.72%), Query Frame = -3


Query: 39  VVACAEAGDEVANNTLLDSVEELALNVRAVIQRLGLAGEDGQEAFPLAMVGGVLEAKRRW 98
           VV+CAEAGDEVAN  L  SVEELAL+V+AV+QRLGL GEDG  +FPL MVGGVLEA +RW
Sbjct: 245 VVSCAEAGDEVANKILQVSVEELALSVKAVVQRLGLCGEDGNSSFPLVMVGGVLEANKRW 304

Query: 99  DIAKKVINSIYQ 158
           DI K+V+N IY+
Sbjct: 305 DIGKEVVNCIYR 316

Query: 159  218
           
Sbjct: 365  316

Query: 219  255
           
Sbjct: 425  316

The following BLAST results are available for this feature:

BLAST of CU085994 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZR9_CUCSA	7.0e-28	95.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G616770 PE=4 SV=1	[more]
A0A0A0KZR9_CUCSA	1.5e+02	92.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G616770 PE=4 SV=1	[more]
A0A059DD75_EUCGR	1.1e-20	67.09	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A00888 PE=4 SV=1	[more]
E0CTZ3_VITVI	1.8e-20	69.44	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g01190 PE=4 SV=...	[more]
A0A067E0P6_CITSI	5.4e-20	71.43	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0175272mg PE=4 ...	[more]

BLAST of CU085994 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463605\|ref\|XP_004149522.1\|	1.3e-27	95.71	PREDICTED: LOW QUALITY PROTEIN: N-acetyl-D-glucosamine kinase-like [Cucumis sati...	[more]
gi\|700199800\|gb\|KGN54958.1\|	1.3e-27	95.71	hypothetical protein Csa_4G616770 [Cucumis sativus]	[more]
gi\|659129372\|ref\|XP_008464652.1\|	2.9e-27	94.29	PREDICTED: N-acetyl-D-glucosamine kinase-like [Cucumis melo]	[more]
gi\|223539263\|gb\|EEF40856.1\|	9.1e-21	72.22	N-acetylglucosamine kinase, putative [Ricinus communis]	[more]
gi\|1000960325\|ref\|XP_015576283.1\|	9.1e-21	72.22	PREDICTED: N-acetyl-D-glucosamine kinase [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G616770	Csa4G616770	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02K7RYJ	FKNP3UI02K7RYJ	EST
H0079135	H0079135	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12862	BADF TYPE ATPASE DOMAIN-CONTAINING PROTEIN	coord: 2..71 score: 4.6
None	No IPR available	PANTHER	PTHR12862:SF6	ACTIN-LIKE ATPASE SUPERFAMILY PROTEIN	coord: 2..71 score: 4.6
None	No IPR available	unknown	SSF53067	Actin-like ATPase domain	coord: 2..71 score: 7.1