CU084942 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU084942
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	ATP-dependent Clp protease ATP-binding subunit
Location	Chr1 : 61518 .. 62354 (+)
Sequence length	362

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CGGCCGGGGAACAAATAGAAGAGAGGCTCTTCCTCTCAGTCTCATCTTCTCCGCCCTTCCATTTCCACCGAACGCCTTATCAGTATCAAGGCTGTGGATATCATGGCTAGAGTTCTGGTTCAGTCGACAAATATTCCTGGTTTGGTCGGTGGGAGAAAGAATGGCCTTACAACAAGGGGGTCGGCAAATGTAAAACGGGCTGTTAAAATGATGTCCACCGCGCATTCACCTGGTTTGAGAATAAGAAATTTCTCTGGACTCAGAGGATTTAATTCTTTGGATAACATGTTGAGAAGTAGACAAAATTTTCATTCCAAGGTGGCCACTGCAATCTCTTCGAGGCGACGAAAGGCTAGCAGATG

Library


Library category	ESTs
fruit (8DPP) library	2
gynoecious flower library	2
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU084942 vs. Swiss-Prot
Match: CLPC_PEA (Chaperone protein ClpC, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 7.4e-16
Identity = 45/86 (52.33%), Postives = 56/86 (65.12%), Query Frame = 1


Query: 103 MARVLVQSTNIPGLVGGRKNGLTTRGSANVKRAVKMMSTAHSPGLRIRNFSGLRGFNSLD 162
           MARVL QS ++PGLV G K+    +GS   KR+VK M    + GLR+  FSGLR FN L+
Sbjct: 1   MARVLAQSLSVPGLVAGHKDS-QHKGSGKSKRSVKTMCALRTSGLRMSGFSGLRTFNHLN 60

Query: 163 NMLRSRQNFHSKVATAISSRRRKASR 222
            M+R   +FHSKV+ A+SSRR +A R
Sbjct: 61  TMMRPGLDFHSKVSKAVSSRRARAKR 85

Query: 223  282
           
Sbjct: 121  85

Query: 283  342
           
Sbjct: 181  85

Query: 343  361
           
Sbjct: 241  85

[Close]

BLAST of CU084942 vs. Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.9e-12
Identity = 42/88 (47.73%), Postives = 53/88 (60.23%), Query Frame = 1


Query: 103 MARVLVQSTNIPGLVGGRKNGLTTR--GSANVKRAVKMMSTAHSPGLRIRNFSGLRGFNS 162
           MAR LVQST+IP  V G +   TT+  GS   KRAV M+  A S  L +R+F+GLRG N+
Sbjct: 1   MARALVQSTSIPSSVAGER---TTKFNGSGKTKRAVTMLCNAQSSSLTLRDFTGLRGCNA 60

Query: 163 LDNMLRSRQNFHSKVATAISSRRRKASR 222
           +D ++RS +   SKVA A   RR +  R
Sbjct: 61  IDTLVRSGETLQSKVAAATYVRRPRGCR 85

Query: 223  282
           
Sbjct: 121  85

Query: 283  342
           
Sbjct: 181  85

Query: 343  361
           
Sbjct: 241  85

[Close]

BLAST of CU084942 vs. Swiss-Prot
Match: CLPC1_ARATH (Chaperone protein ClpC1, chloroplastic OS=Arabidopsis thaliana GN=CLPC1 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.7e-10
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 109 RVLVQSTNIPGLVGGRKNGLTTRGSANVKRAVKMM-STAHSPGLRIRNFSGLRGFNSLDN 168
           RVL QST  P L   ++N + +RGS   +R+VKMM S     GLR++ F GLRG N+LD 
Sbjct: 6   RVLAQSTP-PSLACYQRN-VPSRGSGRSRRSVKMMCSQLQVSGLRMQGFMGLRGNNALDT 65

Query: 169 MLRSRQNFHSKVATAISSRRRKASR 228
           + +SRQ+FHSKV  A++  + KASR
Sbjct: 66  LGKSRQDFHSKVRQAMNVPKGKASR 88

Query: 229  288
           
Sbjct: 126  88

Query: 289  348
           
Sbjct: 186  88

Query: 349  361
           
Sbjct: 246  88

[Close]

BLAST of CU084942 vs. Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-09
Identity = 39/88 (44.32%), Postives = 49/88 (55.68%), Query Frame = 1


Query: 100 IMARVLVQSTNIPGLVGGRKNGLTTRGSANVKRAVKMMSTAHSPGLRIRNFSGLRGFNSL 159
           +MAR LVQSTNI   V G + G    GS   +R V+M+        R+ NF+GLRG N+L
Sbjct: 1   MMARALVQSTNILPSVAGERAG-QFNGSRKDQRTVRMLCNVKCCSSRLNNFAGLRGCNAL 60

Query: 160 DNML-RSRQNFHSKVATAISSRRRKASR 219
           D +L +S +  HSKVA A   RR +  R
Sbjct: 61  DTLLVKSGETLHSKVAAATFVRRPRGCR 87

Query: 220  279
           
Sbjct: 121  87

Query: 280  339
           
Sbjct: 181  87

Query: 340  361
           
Sbjct: 241  87

[Close]

BLAST of CU084942 vs. TrEMBL
Match: E5GBL8_CUCME (ATP-dependent clp protease OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-34
Identity = 78/86 (90.70%), Postives = 83/86 (96.51%), Query Frame = 1


Query: 103 MARVLVQSTNIPGLVGGRKNGLTTRGSANVKRAVKMMSTAHSPGLRIRNFSGLRGFNSLD 162
           MARVLVQSTNIPGLVGGRKNGLT+RGSA+VKRAVKMM+TAHSPGLRIRNFSGLRGFNSLD
Sbjct: 1   MARVLVQSTNIPGLVGGRKNGLTSRGSASVKRAVKMMATAHSPGLRIRNFSGLRGFNSLD 60

Query: 163 NMLRSRQNFHSKVATAISSRRRKASR 222
           NMLRS Q+FHSK+A  ISSRRRKASR
Sbjct: 61  NMLRSGQDFHSKMAITISSRRRKASR 86

Query: 223  282
           
Sbjct: 121  86

Query: 283  342
           
Sbjct: 181  86

Query: 343  361
           
Sbjct: 241  86

[Close]

BLAST of CU084942 vs. TrEMBL
Match: A0A0A0LNF0_CUCSA (Inner-membrane translocator OS=Cucumis sativus GN=Csa_1G000590 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.5e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 2


Query: 11  TNRREALPLSLIFSALPFPPNALSVSRLWISWLEFWFSRQIFLVWSVGERMALQQGGRQM 70
           TNRREALPLSLIFSALPFPPNALSVSRLWISWLEFWFSRQIFLVWSVGERMALQQGGRQM
Sbjct: 33  TNRREALPLSLIFSALPFPPNALSVSRLWISWLEFWFSRQIFLVWSVGERMALQQGGRQM 92

Query: 71   130
           
Sbjct: 93   92

Query: 131  190
           
Sbjct: 153  92

[Close]

BLAST of CU084942 vs. TrEMBL
Match: A0A0A0LXZ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G502360 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.2e-22
Identity = 59/81 (72.84%), Postives = 67/81 (82.72%), Query Frame = 1


Query: 103 MARVLVQSTNIPGLVGGRKNGLTTRGSANVKRAVKMMSTAHSPGLRIRNFSGLRGFNSLD 162
           MARVLVQ TNIPGLV  RK+  ++RGS N KR VKMMS+ HSPG+R+R+FSGLRG NSLD
Sbjct: 1   MARVLVQPTNIPGLVVARKSP-SSRGSGNAKRVVKMMSSVHSPGMRMRSFSGLRGLNSLD 60

Query: 163 NMLRSRQNFHSKVATAISSRR 222
           NM R  Q+FHSKVA AISSRR
Sbjct: 61  NMFRPGQDFHSKVAIAISSRR 80

Query: 223  282
           
Sbjct: 121  80

Query: 283  342
           
Sbjct: 181  80

Query: 343  346
           
Sbjct: 241  80

[Close]

BLAST of CU084942 vs. TrEMBL
Match: W9R8X7_9ROSA (Chaperone protein ClpC OS=Morus notabilis GN=L484_005194 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-20
Identity = 56/86 (65.12%), Postives = 68/86 (79.07%), Query Frame = 1


Query: 103 MARVLVQSTNIPGLVGGRKNGLTTRGSANVKRAVKMMSTAHSPGLRIRNFSGLRGFNSLD 162
           MARVLVQSTN+PGLV G K+G  ++GS   KRAV+MMS   +PGLR+R FSGLR FN+LD
Sbjct: 1   MARVLVQSTNVPGLVSGLKHG-QSKGSGKSKRAVRMMSCIQAPGLRMRGFSGLRSFNALD 60

Query: 163 NMLRSRQNFHSKVATAISSRRRKASR 222
            M+R  Q+F+SKVA   SSRR+KASR
Sbjct: 61  TMMRPGQDFYSKVAITRSSRRQKASR 85

Query: 223  282
           
Sbjct: 121  85

Query: 283  342
           
Sbjct: 181  85

Query: 343  361
           
Sbjct: 241  85

[Close]

BLAST of CU084942 vs. TrEMBL
Match: M5WCY0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001062mg PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.6e-17
Identity = 53/86 (61.63%), Postives = 65/86 (75.58%), Query Frame = 1


Query: 103 MARVLVQSTNIPGLVGGRKNGLTTRGSANVKRAVKMMSTAHSPGLRIRNFSGLRGFNSLD 162
           MARVLVQSTNIPG+V GR+ G  ++GS N KR VKM  T  +PGLRI +FSGLR  N+LD
Sbjct: 1   MARVLVQSTNIPGVVAGRRLG-QSKGSGNAKRTVKMCCTLRAPGLRISSFSGLRSVNALD 60

Query: 163 NMLRSRQNFHSKVATAISSRRRKASR 222
            M +  Q+F+SK+  AI+S RRKASR
Sbjct: 61  IMAKPGQDFYSKMGVAITS-RRKASR 84

Query: 223  282
           
Sbjct: 121  84

Query: 283  342
           
Sbjct: 181  84

Query: 343  361
           
Sbjct: 241  84

[Close]

BLAST of CU084942 vs. NCBI nr
Match: gi|778655197|ref|XP_011648878.1| (PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 7.6e-37
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 103 MARVLVQSTNIPGLVGGRKNGLTTRGSANVKRAVKMMSTAHSPGLRIRNFSGLRGFNSLD 162
           MARVLVQSTNIPGLVGGRKNGLTTRGSANVKRAVKMMSTAHSPGLRIRNFSGLRGFNSLD
Sbjct: 1   MARVLVQSTNIPGLVGGRKNGLTTRGSANVKRAVKMMSTAHSPGLRIRNFSGLRGFNSLD 60

Query: 163 NMLRSRQNFHSKVATAISSRRRKASR 222
           NMLRSRQNFHSKVATAISSRRRKASR
Sbjct: 61  NMLRSRQNFHSKVATAISSRRRKASR 86

Query: 223  282
           
Sbjct: 121  86

Query: 283  342
           
Sbjct: 181  86

Query: 343  361
           
Sbjct: 241  86

[Close]

BLAST of CU084942 vs. NCBI nr
Match: gi|659128793|ref|XP_008464372.1| (PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic [Cucumis melo])

HSP 1 Score: 147.5 bits (371), Expect = 1.5e-32
Identity = 78/86 (90.70%), Postives = 83/86 (96.51%), Query Frame = 1


Query: 103 MARVLVQSTNIPGLVGGRKNGLTTRGSANVKRAVKMMSTAHSPGLRIRNFSGLRGFNSLD 162
           MARVLVQSTNIPGLVGGRKNGLT+RGSA+VKRAVKMM+TAHSPGLRIRNFSGLRGFNSLD
Sbjct: 1   MARVLVQSTNIPGLVGGRKNGLTSRGSASVKRAVKMMATAHSPGLRIRNFSGLRGFNSLD 60

Query: 163 NMLRSRQNFHSKVATAISSRRRKASR 222
           NMLRS Q+FHSK+A  ISSRRRKASR
Sbjct: 61  NMLRSGQDFHSKMAITISSRRRKASR 86

Query: 223  282
           
Sbjct: 121  86

Query: 283  342
           
Sbjct: 181  86

Query: 343  361
           
Sbjct: 241  86

[Close]

BLAST of CU084942 vs. NCBI nr
Match: gi|307136002|gb|ADN33858.1| (ATP-dependent clp protease [Cucumis melo subsp. melo])

HSP 1 Score: 147.5 bits (371), Expect = 1.5e-32
Identity = 78/86 (90.70%), Postives = 83/86 (96.51%), Query Frame = 1


Query: 103 MARVLVQSTNIPGLVGGRKNGLTTRGSANVKRAVKMMSTAHSPGLRIRNFSGLRGFNSLD 162
           MARVLVQSTNIPGLVGGRKNGLT+RGSA+VKRAVKMM+TAHSPGLRIRNFSGLRGFNSLD
Sbjct: 1   MARVLVQSTNIPGLVGGRKNGLTSRGSASVKRAVKMMATAHSPGLRIRNFSGLRGFNSLD 60

Query: 163 NMLRSRQNFHSKVATAISSRRRKASR 222
           NMLRS Q+FHSK+A  ISSRRRKASR
Sbjct: 61  NMLRSGQDFHSKMAITISSRRRKASR 86

Query: 223  282
           
Sbjct: 121  86

Query: 283  342
           
Sbjct: 181  86

Query: 343  361
           
Sbjct: 241  86

[Close]

BLAST of CU084942 vs. NCBI nr
Match: gi|700208339|gb|KGN63435.1| (Inner-membrane translocator [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 1.6e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 2


Query: 11  TNRREALPLSLIFSALPFPPNALSVSRLWISWLEFWFSRQIFLVWSVGERMALQQGGRQM 70
           TNRREALPLSLIFSALPFPPNALSVSRLWISWLEFWFSRQIFLVWSVGERMALQQGGRQM
Sbjct: 33  TNRREALPLSLIFSALPFPPNALSVSRLWISWLEFWFSRQIFLVWSVGERMALQQGGRQM 92

Query: 71   130
           
Sbjct: 93   92

Query: 131  190
           
Sbjct: 153  92

[Close]

BLAST of CU084942 vs. NCBI nr
Match: gi|449470390|ref|XP_004152900.1| (PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 7.6e-21
Identity = 59/81 (72.84%), Postives = 67/81 (82.72%), Query Frame = 1


Query: 103 MARVLVQSTNIPGLVGGRKNGLTTRGSANVKRAVKMMSTAHSPGLRIRNFSGLRGFNSLD 162
           MARVLVQ TNIPGLV  RK+  ++RGS N KR VKMMS+ HSPG+R+R+FSGLRG NSLD
Sbjct: 1   MARVLVQPTNIPGLVVARKSP-SSRGSGNAKRVVKMMSSVHSPGMRMRSFSGLRGLNSLD 60

Query: 163 NMLRSRQNFHSKVATAISSRR 222
           NM R  Q+FHSKVA AISSRR
Sbjct: 61  NMFRPGQDFHSKVAIAISSRR 80

Query: 223  282
           
Sbjct: 121  80

Query: 283  342
           
Sbjct: 181  80

Query: 343  346
           
Sbjct: 241  80

The following BLAST results are available for this feature:

BLAST of CU084942 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CLPC_PEA	7.4e-16	52.33	Chaperone protein ClpC, chloroplastic OS=Pisum sativum PE=2 SV=1	[more]
CLPAB_SOLLC	2.9e-12	47.73	ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic ...	[more]
CLPC1_ARATH	2.7e-10	49.41	Chaperone protein ClpC1, chloroplastic OS=Arabidopsis thaliana GN=CLPC1 PE=1 SV=...	[more]
CLPAA_SOLLC	2.3e-09	44.32	ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4A, chloroplastic ...	[more]

BLAST of CU084942 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GBL8_CUCME	1.1e-34	90.70	ATP-dependent clp protease OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
A0A0A0LNF0_CUCSA	2.5e-26	100.00	Inner-membrane translocator OS=Cucumis sativus GN=Csa_1G000590 PE=4 SV=1	[more]
A0A0A0LXZ3_CUCSA	2.2e-22	72.84	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G502360 PE=3 SV=1	[more]
W9R8X7_9ROSA	1.5e-20	65.12	Chaperone protein ClpC OS=Morus notabilis GN=L484_005194 PE=4 SV=1	[more]
M5WCY0_PRUPE	3.6e-17	61.63	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001062mg PE=3 SV=1	[more]

BLAST of CU084942 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778655197\|ref\|XP_011648878.1\|	7.6e-37	100.00	PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chl...	[more]
gi\|659128793\|ref\|XP_008464372.1\|	1.5e-32	90.70	PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chl...	[more]
gi\|307136002\|gb\|ADN33858.1\|	1.5e-32	90.70	ATP-dependent clp protease [Cucumis melo subsp. melo]	[more]
gi\|700208339\|gb\|KGN63435.1\|	1.6e-26	100.00	Inner-membrane translocator [Cucumis sativus]	[more]
gi\|449470390\|ref\|XP_004152900.1\|	7.6e-21	72.84	PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chl...	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa1G000590	Csa1G000590	gene
Csa1G000600	Csa1G000600	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02LZHBF	FKNP3UI02LZHBF	EST
FKNP3UI02NGRUU	FKNP3UI02NGRUU	EST
G0006779	G0006779	EST
G0068268	G0068268	EST
H0141348	H0141348	EST