CU084747 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU084747
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Location	Chr5 : 23968035 .. 23968491 (-)
Sequence length	466

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ATATGTACTGAAAAGGCTACCGAACGATGCCGTTTCCGTTCGAGAGCGTGGGAATAGGATCGGAAGGGAAGCCGGAGGAGATGGAGATGGAGCAGAAGTTTTCCTTTGAAGGAATGTTGAAGTACCTGAAATCGATGGGGCCGGTGATTACGGCGAAGGAGAACGGCGTTGATGTGATGTGTGAAGAAATGGTTAAGGAATTGAGAGATGCTTGGGGCGGGAGGAGGAGATTTGGTTCGAACCGTCGTCTATAAATGCTTTATGATTGCCGGGAAAAAGTTAAAAGCGTAATGGATTGCCCGTCATGTTAACTTTAACGAACGAAGGACATAATGATTCATCAACCATTCGATCTACCAAATCCAAATAGTTTTATTTCTTTAGTTGAGTGTCTTTGGTTATTTTTTGTTAGGTTGGATCTTAAGATGACTTTGGGAGAATAATAAAGGGTGTGACACTTGGTACG

Library


Library category	ESTs
gynoecious flower library	3
hermaphrodite flower library	3

Homology

[Close]

BLAST of CU084747 vs. TrEMBL
Match: A0A0A0KUM9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G611730 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.0e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 3


Query: 12  KGYRTMPFPFESVGIGSEGKPEEMEMEQKFSFEGMLKYLKSMGPVITAKENGVDVMCEEM 71
           KGYRTMPFPFESVGIGSEGKPEEMEMEQKFSFEGMLKYLKSMGPVITAKENGVDVMCEEM
Sbjct: 175 KGYRTMPFPFESVGIGSEGKPEEMEMEQKFSFEGMLKYLKSMGPVITAKENGVDVMCEEM 234

Query: 72  VKELRDAWGG 131
           VKELRDAWGG
Sbjct: 235 VKELRDAWGG 244

Query: 132  191
           
Sbjct: 295  244

Query: 192  222
           
Sbjct: 355  244

[Close]

BLAST of CU084747 vs. TrEMBL
Match: R0GPU1_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10007518mg PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.7e-16
Identity = 43/69 (62.32%), Postives = 54/69 (78.26%), Query Frame = 3


Query: 15  GYRTMPFPFESVGIGSEGKPEEMEMEQKFSFEGMLKYLKSMGPVITAKENGVDVMCEEMV 74
           GY+T+PFPFESVG+GSEGKP E+EM++  SFEG L+ LKS   V  AKE GVD++ + +V
Sbjct: 174 GYKTLPFPFESVGLGSEGKPIELEMKKTVSFEGFLRMLKSWSAVGAAKEKGVDLLSDNVV 233

Query: 75  KELRDAWGG 134
           KEL  AWGG
Sbjct: 234 KELETAWGG 242

Query: 135  194
           
Sbjct: 294  242

Query: 195  222
           
Sbjct: 354  242

[Close]

BLAST of CU084747 vs. TrEMBL
Match: B9H4L2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s06850g PE=4 SV=2)

HSP 1 Score: 93.6 bits (231), Expect = 2.3e-16
Identity = 41/68 (60.29%), Postives = 55/68 (80.88%), Query Frame = 3


Query: 18  YRTMPFPFESVGIGSEGKPEEMEMEQKFSFEGMLKYLKSMGPVITAKENGVDVMCEEMVK 77
           Y+T+PFPFESVG+GSEG+P E+EM+++ SFEG+LK LKS+    TAK  GVD++ EE+V+
Sbjct: 173 YKTLPFPFESVGVGSEGQPLELEMQKEMSFEGLLKLLKSLSSFNTAKGQGVDLLSEEVVR 232

Query: 78  ELRDAWGG 137
           E   AWGG
Sbjct: 233 EFESAWGG 240

Query: 138  197
           
Sbjct: 293  240

Query: 198  222
           
Sbjct: 353  240

[Close]

BLAST of CU084747 vs. TrEMBL
Match: Q9SUW6_ARATH (Putative uncharacterized protein AT4g22530 OS=Arabidopsis thaliana GN=At4g22530 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.0e-16
Identity = 42/69 (60.87%), Postives = 54/69 (78.26%), Query Frame = 3


Query: 15  GYRTMPFPFESVGIGSEGKPEEMEMEQKFSFEGMLKYLKSMGPVITAKENGVDVMCEEMV 74
           GY+T+PFPFESVG+GSEGKP E+EM++  SFEG L+ L+S   V  AKE GVD++ + +V
Sbjct: 174 GYKTLPFPFESVGLGSEGKPMELEMKKTVSFEGFLRMLRSWSAVGAAKEKGVDLLSDNVV 233

Query: 75  KELRDAWGG 134
           KEL  AWGG
Sbjct: 234 KELETAWGG 242

Query: 135  194
           
Sbjct: 294  242

Query: 195  222
           
Sbjct: 354  242

[Close]

BLAST of CU084747 vs. TrEMBL
Match: Q8RX02_ARATH (Putative uncharacterized protein At4g22530 (Fragment) OS=Arabidopsis thaliana GN=At4g22530 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.0e-16
Identity = 42/69 (60.87%), Postives = 54/69 (78.26%), Query Frame = 3


Query: 15  GYRTMPFPFESVGIGSEGKPEEMEMEQKFSFEGMLKYLKSMGPVITAKENGVDVMCEEMV 74
           GY+T+PFPFESVG+GSEGKP E+EM++  SFEG L+ L+S   V  AKE GVD++ + +V
Sbjct: 150 GYKTLPFPFESVGLGSEGKPMELEMKKTVSFEGFLRMLRSWSAVGAAKEKGVDLLSDNVV 209

Query: 75  KELRDAWGG 134
           KEL  AWGG
Sbjct: 210 KELETAWGG 218

Query: 135  194
           
Sbjct: 270  218

Query: 195  222
           
Sbjct: 330  218

[Close]

BLAST of CU084747 vs. NCBI nr
Match: gi|449434550|ref|XP_004135059.1| (PREDICTED: putative methyltransferase DDB_G0268948 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 5.0e-33
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 3


Query: 12  KGYRTMPFPFESVGIGSEGKPEEMEMEQKFSFEGMLKYLKSMGPVITAKENGVDVMCEEM 71
           KGYRTMPFPFESVGIGSEGKPEEMEMEQKFSFEGMLKYLKSMGPVITAKENGVDVMCEEM
Sbjct: 175 KGYRTMPFPFESVGIGSEGKPEEMEMEQKFSFEGMLKYLKSMGPVITAKENGVDVMCEEM 234

Query: 72  VKELRDAWGG 131
           VKELRDAWGG
Sbjct: 235 VKELRDAWGG 244

Query: 132  191
           
Sbjct: 295  244

Query: 192  222
           
Sbjct: 355  244

[Close]

BLAST of CU084747 vs. NCBI nr
Match: gi|659091729|ref|XP_008446700.1| (PREDICTED: putative methyltransferase DDB_G0268948 [Cucumis melo])

HSP 1 Score: 145.6 bits (366), Expect = 7.2e-32
Identity = 67/70 (95.71%), Postives = 70/70 (100.00%), Query Frame = 3


Query: 12  KGYRTMPFPFESVGIGSEGKPEEMEMEQKFSFEGMLKYLKSMGPVITAKENGVDVMCEEM 71
           KGY+T+PFPFESVGIGSEG+PEEMEMEQKFSFEGMLKYLKSMGPVITAKENGVDVMCEEM
Sbjct: 175 KGYKTLPFPFESVGIGSEGEPEEMEMEQKFSFEGMLKYLKSMGPVITAKENGVDVMCEEM 234

Query: 72  VKELRDAWGG 131
           VKELRDAWGG
Sbjct: 235 VKELRDAWGG 244

Query: 132  191
           
Sbjct: 295  244

Query: 192  222
           
Sbjct: 355  244

[Close]

BLAST of CU084747 vs. NCBI nr
Match: gi|727528088|ref|XP_010439329.1| (PREDICTED: putative methyltransferase DDB_G0268948 [Camelina sativa])

HSP 1 Score: 95.5 bits (236), Expect = 8.6e-17
Identity = 42/69 (60.87%), Postives = 55/69 (79.71%), Query Frame = 3


Query: 15  GYRTMPFPFESVGIGSEGKPEEMEMEQKFSFEGMLKYLKSMGPVITAKENGVDVMCEEMV 74
           GY+T+PFPFESVG+GSEGKP E+EM++  SFEG+L+ L+S   V  AKE GVD++ + +V
Sbjct: 175 GYKTLPFPFESVGLGSEGKPIELEMKKTMSFEGLLRILRSWSAVGAAKEKGVDLLSDNIV 234

Query: 75  KELRDAWGG 134
           KEL  AWGG
Sbjct: 235 KELETAWGG 243

Query: 135  194
           
Sbjct: 295  243

Query: 195  222
           
Sbjct: 355  243

[Close]

BLAST of CU084747 vs. NCBI nr
Match: gi|565451303|ref|XP_006285991.1| (hypothetical protein CARUB_v10007518mg [Capsella rubella])

HSP 1 Score: 95.5 bits (236), Expect = 8.6e-17
Identity = 43/69 (62.32%), Postives = 54/69 (78.26%), Query Frame = 3


Query: 15  GYRTMPFPFESVGIGSEGKPEEMEMEQKFSFEGMLKYLKSMGPVITAKENGVDVMCEEMV 74
           GY+T+PFPFESVG+GSEGKP E+EM++  SFEG L+ LKS   V  AKE GVD++ + +V
Sbjct: 174 GYKTLPFPFESVGLGSEGKPIELEMKKTVSFEGFLRMLKSWSAVGAAKEKGVDLLSDNVV 233

Query: 75  KELRDAWGG 134
           KEL  AWGG
Sbjct: 234 KELETAWGG 242

Query: 135  194
           
Sbjct: 294  242

Query: 195  222
           
Sbjct: 354  242

[Close]

BLAST of CU084747 vs. NCBI nr
Match: gi|727552982|ref|XP_010448882.1| (PREDICTED: putative methyltransferase DDB_G0268948 [Camelina sativa])

HSP 1 Score: 95.5 bits (236), Expect = 8.6e-17
Identity = 42/69 (60.87%), Postives = 55/69 (79.71%), Query Frame = 3


Query: 15  GYRTMPFPFESVGIGSEGKPEEMEMEQKFSFEGMLKYLKSMGPVITAKENGVDVMCEEMV 74
           GY+T+PFPFESVG+GSEGKP E+EM++  SFEG+L+ L+S   V  AKE GVD++ + +V
Sbjct: 175 GYKTLPFPFESVGLGSEGKPIELEMKKTMSFEGLLRILRSWSAVGAAKEKGVDLLSDNVV 234

Query: 75  KELRDAWGG 134
           KEL  AWGG
Sbjct: 235 KELETAWGG 243

Query: 135  194
           
Sbjct: 295  243

Query: 195  222
           
Sbjct: 355  243

The following BLAST results are available for this feature:

BLAST of CU084747 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUM9_CUCSA	1.0e-32	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G611730 PE=4 SV=1	[more]
R0GPU1_9BRAS	1.7e-16	62.32	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10007518mg PE=4 SV=1	[more]
B9H4L2_POPTR	2.3e-16	60.29	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s06850g PE=4 SV=2	[more]
Q9SUW6_ARATH	3.0e-16	60.87	Putative uncharacterized protein AT4g22530 OS=Arabidopsis thaliana GN=At4g22530 ...	[more]
Q8RX02_ARATH	3.0e-16	60.87	Putative uncharacterized protein At4g22530 (Fragment) OS=Arabidopsis thaliana GN...	[more]

BLAST of CU084747 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449434550\|ref\|XP_004135059.1\|	5.0e-33	100.00	PREDICTED: putative methyltransferase DDB_G0268948 [Cucumis sativus]	[more]
gi\|659091729\|ref\|XP_008446700.1\|	7.2e-32	95.71	PREDICTED: putative methyltransferase DDB_G0268948 [Cucumis melo]	[more]
gi\|727528088\|ref\|XP_010439329.1\|	8.6e-17	60.87	PREDICTED: putative methyltransferase DDB_G0268948 [Camelina sativa]	[more]
gi\|565451303\|ref\|XP_006285991.1\|	8.6e-17	62.32	hypothetical protein CARUB_v10007518mg [Capsella rubella]	[more]
gi\|727552982\|ref\|XP_010448882.1\|	8.6e-17	60.87	PREDICTED: putative methyltransferase DDB_G0268948 [Camelina sativa]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa5G611730	Csa5G611730	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0068452	G0068452	EST
G0138869	G0138869	EST
G0189705	G0189705	EST
H0049408	H0049408	EST
H0068041	H0068041	EST
H0125907	H0125907	EST