CU084678 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU084678
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Gibberellin receptor GID1, putative
Location	Chr6 : 16160487 .. 16160968 (-)
Sequence length	493

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CGGCCGGGACCGGAAGGATGTGACAGAGACCATCCGTCGGTAAACGTTTTCGGTCCAAACGCGACGGATATATCGAATGTAAGGTATCCGGCGACTAAAGTGTTGGTTGGAGGATTAGATCCGTTAATCGATTGGCAAAAGAGATACTACGAAGGATTGAAGAAATCCGGGAAGGAAGCTTACTTGAGTGAATATCCGAATGCGTTTCACAGCTTTTAACGGAATTTCCGGAGTTGGCGGAATCCAATCTGTTCATCAAAGATGTTAGGGATTTCGTAGGGGAACAATGCTTGAAGAGAAGCAGTTGAAGGAATCAGAATCACGAATTCAGCGGATGATGGTCAAGGAACGGTAAGATTTAAAAGCTTTGTGCGTTTTATTTGATTACAAATTAAGAACAAATATTAAGATAGTGTATGAAAATGATGGTTGAAGACATGTGACTCATTAATAAGTACTTCTACTTGTATTAAATATTTTCTAACTTACTCCC

Library


Library category	ESTs
fruit (8DPP) library	6
gynoecious flower library	2
hermaphrodite flower library	1

Homology

[Close]

BLAST of CU084678 vs. Swiss-Prot
Match: CXE18_ARATH (Probable carboxylesterase 18 OS=Arabidopsis thaliana GN=CXE18 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-17
Identity = 42/67 (62.69%), Postives = 47/67 (70.15%), Query Frame = 1


Query: 16  GCDRDHPSVNVFGPNATDISNVRYPATKVLVGGLDPLIDWQKRYYEGLKKSGKEAYLSEY 75
           G +RDH +VNV GPNA DIS + YP T V+V G DPL DWQ+ YYE LK  GK+A L EY
Sbjct: 240 GLNRDHEAVNVGGPNAVDISGLDYPETMVVVAGFDPLKDWQRSYYEWLKLCGKKATLIEY 299

Query: 76  PNAFHSF 135
           PN FH+F
Sbjct: 300 PNMFHAF 306

Query: 136  195
           
Sbjct: 360  306

Query: 196  217
           
Sbjct: 420  306

[Close]

BLAST of CU084678 vs. Swiss-Prot
Match: GID1B_ARATH (Gibberellin receptor GID1B OS=Arabidopsis thaliana GN=GID1B PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.8e-10
Identity = 30/59 (50.85%), Postives = 36/59 (61.02%), Query Frame = 1


Query: 10  PEGCDRDHPSVNVFGPNATDISNVRYPATKVLVGGLDPLIDWQKRYYEGLKKSGKEAYL 69
           PEG DRDHP+ N FGP    +  V +P + V+V GLD + DWQ  Y +GLKK+G E  L
Sbjct: 253 PEGEDRDHPACNPFGPRGQSLKGVNFPKSLVVVAGLDLVQDWQLAYVDGLKKTGLEVNL 311

Query: 70   129
           
Sbjct: 313  311

Query: 130  187
           
Sbjct: 373  311

[Close]

BLAST of CU084678 vs. Swiss-Prot
Match: GID1A_ARATH (Gibberellin receptor GID1A OS=Arabidopsis thaliana GN=GID1A PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.3e-10
Identity = 31/69 (44.93%), Postives = 38/69 (55.07%), Query Frame = 1


Query: 10  PEGCDRDHPSVNVFGPNATDISNVRYPATKVLVGGLDPLIDWQKRYYEGLKKSGKEAYLS 69
           PEG DR+HP+ N F P    +  V +P + V+V GLD + DWQ  Y EGLKK+G+E  L 
Sbjct: 253 PEGEDREHPACNPFSPRGKSLEGVSFPKSLVVVAGLDLIRDWQLAYAEGLKKAGQEVKLM 312

Query: 70  EYPNAFHSF 129
               A   F
Sbjct: 313 HLEKATVGF 321

Query: 130  189
           
Sbjct: 373  321

Query: 190  217
           
Sbjct: 433  321

[Close]

BLAST of CU084678 vs. Swiss-Prot
Match: GID1C_ARATH (Gibberellin receptor GID1C OS=Arabidopsis thaliana GN=GID1C PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.3e-10
Identity = 28/59 (47.46%), Postives = 39/59 (66.10%), Query Frame = 1


Query: 10  PEGCDRDHPSVNVFGPNATDISNVRYPATKVLVGGLDPLIDWQKRYYEGLKKSGKEAYL 69
           PEG DR+HP+ + FGP +  +  + +P + V+V GLD + DWQ +Y EGLKK+G+E  L
Sbjct: 251 PEGEDREHPACSPFGPRSKSLEGLSFPKSLVVVAGLDLIQDWQLKYAEGLKKAGQEVKL 309

Query: 70   129
           
Sbjct: 311  309

Query: 130  187
           
Sbjct: 371  309

[Close]

BLAST of CU084678 vs. TrEMBL
Match: A0A0A0KII8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G361280 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.3e-33
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 10  PEGCDRDHPSVNVFGPNATDISNVRYPATKVLVGGLDPLIDWQKRYYEGLKKSGKEAYLS 69
           PEGCDRDHPSVNVFGPNATDISNVRYPATKVLVGGLDPLIDWQKRYYEGLKKSGKEAYLS
Sbjct: 239 PEGCDRDHPSVNVFGPNATDISNVRYPATKVLVGGLDPLIDWQKRYYEGLKKSGKEAYLS 298

Query: 70  EYPNAFHSF 129
           EYPNAFHSF
Sbjct: 299 EYPNAFHSF 307

Query: 130  189
           
Sbjct: 359  307

Query: 190  217
           
Sbjct: 419  307

[Close]

BLAST of CU084678 vs. TrEMBL
Match: V4TNL0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024355mg PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.4e-24
Identity = 51/69 (73.91%), Postives = 58/69 (84.06%), Query Frame = 1


Query: 10  PEGCDRDHPSVNVFGPNATDISNVRYPATKVLVGGLDPLIDWQKRYYEGLKKSGKEAYLS 69
           PEG DRDHP+ NVFGP + DIS + +PAT V+VGG DPL+DWQKRYYEGLKK+GKE YL 
Sbjct: 228 PEGADRDHPAANVFGPKSEDISGLNFPATIVIVGGYDPLLDWQKRYYEGLKKAGKEVYLI 287

Query: 70  EYPNAFHSF 129
           EYPN FHSF
Sbjct: 288 EYPNVFHSF 296

Query: 130  189
           
Sbjct: 348  296

Query: 190  217
           
Sbjct: 408  296

[Close]

BLAST of CU084678 vs. TrEMBL
Match: A0A067DHU8_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g038541mg PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.7e-23
Identity = 52/69 (75.36%), Postives = 60/69 (86.96%), Query Frame = 1


Query: 10  PEGCDRDHPSVNVFGPNATDISNVRYPATKVLVGGLDPLIDWQKRYYEGLKKSGKEAYLS 69
           PEG DRDHP+ NVFGPN+ DIS +++PAT V+VGG+DPL D QKRYY+GLKK GKEAYL 
Sbjct: 206 PEGSDRDHPAANVFGPNSVDISGLKFPATIVIVGGIDPLKDRQKRYYQGLKKYGKEAYLI 265

Query: 70  EYPNAFHSF 129
           EYPNAFHSF
Sbjct: 266 EYPNAFHSF 274

Query: 130  189
           
Sbjct: 326  274

Query: 190  217
           
Sbjct: 386  274

[Close]

BLAST of CU084678 vs. TrEMBL
Match: V4TNL6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024259mg PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.0e-22
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 1


Query: 10  PEGCDRDHPSVNVFGPNATDISNVRYPATKVLVGGLDPLIDWQKRYYEGLKKSGKEAYLS 69
           PEG DRDHP+ NVFGPN+ DIS  ++P T V+VGG+DPL D QKRYYEGLKK GKEAYL 
Sbjct: 228 PEGSDRDHPAANVFGPNSVDISGRKFPETIVIVGGIDPLKDRQKRYYEGLKKCGKEAYLI 287

Query: 70  EYPNAFHSF 129
           EYPNAFHSF
Sbjct: 288 EYPNAFHSF 296

Query: 130  189
           
Sbjct: 348  296

Query: 190  217
           
Sbjct: 408  296

[Close]

BLAST of CU084678 vs. TrEMBL
Match: A0A067K634_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14822 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.7e-22
Identity = 50/69 (72.46%), Postives = 59/69 (85.51%), Query Frame = 1


Query: 10  PEGCDRDHPSVNVFGPNATDISNVRYPATKVLVGGLDPLIDWQKRYYEGLKKSGKEAYLS 69
           PEG +RDHP+VN+FGPN +DIS +++PAT V++GG DPL DWQKRYYEGLK SGKEAYL 
Sbjct: 240 PEGSNRDHPAVNIFGPNGSDISGMKFPATIVVMGGYDPLQDWQKRYYEGLKMSGKEAYLV 299

Query: 70  EYPNAFHSF 129
           EYPN  HSF
Sbjct: 300 EYPNMPHSF 308

Query: 130  189
           
Sbjct: 360  308

Query: 190  217
           
Sbjct: 420  308

[Close]

BLAST of CU084678 vs. NCBI nr
Match: gi|700192362|gb|KGN47566.1| (hypothetical protein Csa_6G361280 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 1.1e-33
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 10  PEGCDRDHPSVNVFGPNATDISNVRYPATKVLVGGLDPLIDWQKRYYEGLKKSGKEAYLS 69
           PEGCDRDHPSVNVFGPNATDISNVRYPATKVLVGGLDPLIDWQKRYYEGLKKSGKEAYLS
Sbjct: 239 PEGCDRDHPSVNVFGPNATDISNVRYPATKVLVGGLDPLIDWQKRYYEGLKKSGKEAYLS 298

Query: 70  EYPNAFHSF 129
           EYPNAFHSF
Sbjct: 299 EYPNAFHSF 307

Query: 130  189
           
Sbjct: 359  307

Query: 190  217
           
Sbjct: 419  307

[Close]

BLAST of CU084678 vs. NCBI nr
Match: gi|778715188|ref|XP_004144282.2| (PREDICTED: probable carboxylesterase 18 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 1.1e-33
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 10  PEGCDRDHPSVNVFGPNATDISNVRYPATKVLVGGLDPLIDWQKRYYEGLKKSGKEAYLS 69
           PEGCDRDHPSVNVFGPNATDISNVRYPATKVLVGGLDPLIDWQKRYYEGLKKSGKEAYLS
Sbjct: 273 PEGCDRDHPSVNVFGPNATDISNVRYPATKVLVGGLDPLIDWQKRYYEGLKKSGKEAYLS 332

Query: 70  EYPNAFHSF 129
           EYPNAFHSF
Sbjct: 333 EYPNAFHSF 341

Query: 130  189
           
Sbjct: 393  341

Query: 190  217
           
Sbjct: 453  341

[Close]

BLAST of CU084678 vs. NCBI nr
Match: gi|659129863|ref|XP_008464884.1| (PREDICTED: probable carboxylesterase 18 [Cucumis melo])

HSP 1 Score: 147.5 bits (371), Expect = 2.0e-32
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 1


Query: 10  PEGCDRDHPSVNVFGPNATDISNVRYPATKVLVGGLDPLIDWQKRYYEGLKKSGKEAYLS 69
           PEGCDRDHPSVNVFGPN+TDISNVR+PATKVLVGGLDPLIDWQKRYYEGLKKSGKEAYLS
Sbjct: 270 PEGCDRDHPSVNVFGPNSTDISNVRFPATKVLVGGLDPLIDWQKRYYEGLKKSGKEAYLS 329

Query: 70  EYPNAFHSF 129
           EYPN FHSF
Sbjct: 330 EYPNGFHSF 338

Query: 130  189
           
Sbjct: 390  338

Query: 190  217
           
Sbjct: 450  338

[Close]

BLAST of CU084678 vs. NCBI nr
Match: gi|567898568|ref|XP_006441772.1| (hypothetical protein CICLE_v10024355mg [Citrus clementina])

HSP 1 Score: 119.8 bits (299), Expect = 4.5e-24
Identity = 51/69 (73.91%), Postives = 58/69 (84.06%), Query Frame = 1


Query: 10  PEGCDRDHPSVNVFGPNATDISNVRYPATKVLVGGLDPLIDWQKRYYEGLKKSGKEAYLS 69
           PEG DRDHP+ NVFGP + DIS + +PAT V+VGG DPL+DWQKRYYEGLKK+GKE YL 
Sbjct: 228 PEGADRDHPAANVFGPKSEDISGLNFPATIVIVGGYDPLLDWQKRYYEGLKKAGKEVYLI 287

Query: 70  EYPNAFHSF 129
           EYPN FHSF
Sbjct: 288 EYPNVFHSF 296

Query: 130  189
           
Sbjct: 348  296

Query: 190  217
           
Sbjct: 408  296

[Close]

BLAST of CU084678 vs. NCBI nr
Match: gi|641822993|gb|KDO42448.1| (hypothetical protein CISIN_1g038541mg, partial [Citrus sinensis])

HSP 1 Score: 117.5 bits (293), Expect = 2.2e-23
Identity = 52/69 (75.36%), Postives = 60/69 (86.96%), Query Frame = 1


Query: 10  PEGCDRDHPSVNVFGPNATDISNVRYPATKVLVGGLDPLIDWQKRYYEGLKKSGKEAYLS 69
           PEG DRDHP+ NVFGPN+ DIS +++PAT V+VGG+DPL D QKRYY+GLKK GKEAYL 
Sbjct: 206 PEGSDRDHPAANVFGPNSVDISGLKFPATIVIVGGIDPLKDRQKRYYQGLKKYGKEAYLI 265

Query: 70  EYPNAFHSF 129
           EYPNAFHSF
Sbjct: 266 EYPNAFHSF 274

Query: 130  189
           
Sbjct: 326  274

Query: 190  217
           
Sbjct: 386  274

The following BLAST results are available for this feature:

BLAST of CU084678 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CXE18_ARATH	1.1e-17	62.69	Probable carboxylesterase 18 OS=Arabidopsis thaliana GN=CXE18 PE=1 SV=1	[more]
GID1B_ARATH	2.8e-10	50.85	Gibberellin receptor GID1B OS=Arabidopsis thaliana GN=GID1B PE=1 SV=1	[more]
GID1A_ARATH	6.3e-10	44.93	Gibberellin receptor GID1A OS=Arabidopsis thaliana GN=GID1A PE=1 SV=1	[more]
GID1C_ARATH	6.3e-10	47.46	Gibberellin receptor GID1C OS=Arabidopsis thaliana GN=GID1C PE=1 SV=1	[more]

BLAST of CU084678 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KII8_CUCSA	1.3e-33	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G361280 PE=4 SV=1	[more]
V4TNL0_9ROSI	5.4e-24	73.91	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024355mg PE=4 SV=1	[more]
A0A067DHU8_CITSI	2.7e-23	75.36	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g038541mg PE=4 S...	[more]
V4TNL6_9ROSI	1.0e-22	75.36	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024259mg PE=4 SV=1	[more]
A0A067K634_JATCU	1.7e-22	72.46	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14822 PE=4 SV=1	[more]

BLAST of CU084678 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192362\|gb\|KGN47566.1\|	1.1e-33	100.00	hypothetical protein Csa_6G361280 [Cucumis sativus]	[more]
gi\|778715188\|ref\|XP_004144282.2\|	1.1e-33	100.00	PREDICTED: probable carboxylesterase 18 [Cucumis sativus]	[more]
gi\|659129863\|ref\|XP_008464884.1\|	2.0e-32	95.65	PREDICTED: probable carboxylesterase 18 [Cucumis melo]	[more]
gi\|567898568\|ref\|XP_006441772.1\|	4.5e-24	73.91	hypothetical protein CICLE_v10024355mg [Citrus clementina]	[more]
gi\|641822993\|gb\|KDO42448.1\|	2.2e-23	75.36	hypothetical protein CISIN_1g038541mg, partial [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR013094	AB_hydrolase_3

Vocabulary: **Biological Process**
Term	Definition
GO:0008152	metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016787	hydrolase activity

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
molecular_function	GO:0016787	hydrolase activity

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G361280	Csa6G361280	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02K03BS	FKNP3UI02K03BS	EST
FKNP3UI02K9S4M	FKNP3UI02K9S4M	EST
FKNP3UI02L8S1H	FKNP3UI02L8S1H	EST
FKNP3UI02MLZ1B	FKNP3UI02MLZ1B	EST
FKNP3UI02OI0WT	FKNP3UI02OI0WT	EST
FKNP3UI02ONHDB	FKNP3UI02ONHDB	EST
G0046307	G0046307	EST
G0057868	G0057868	EST
H0168942	H0168942	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013094	Alpha/beta hydrolase fold-3	PFAM	PF07859	Abhydrolase_3	coord: 7..69 score: 2.
None	No IPR available	PANTHER	PTHR23024	MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES	coord: 5..118 score: 9.7
None	No IPR available	PANTHER	PTHR23024:SF174	SUBFAMILY NOT NAMED	coord: 5..118 score: 9.7