MELO3C035332.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C035332.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionHomogentisate phytyltransferase 2
Locationchr12 : 5160574 .. 5161268 (-)
Sequence length579
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGTTGTGTTGGCTATCCTGCAGTTATGGTAGCCTCTATAGTTTGAAGTTAGTTATTGAAAAATAGTGAAAATTCAAGGGAGTAAGTTATGGATGTGAGAGAGTGAGAGAGATATGTTTCTAATCGAACCTATTTATGTTTTAGGGACTTAAACGATGGATAAGGGTTGGATGAAACTTAGAAATAAGTTATCCCTTGAGTATAGACATGGAGTGATCCAATTTTTAGAATTTGTCAAGTTTCACGTTAATACCTACAGACGATTAAGGTGTCCATGCAAGAGACGTTTGAATTTAAATTGGAGCTCATTAGAGGATGTGGAACGACATCTGCTGACTGTTGGAATACCCCCCTACTACACAGAATGGGTGTATCATGGAGAGTCATTAGCTATAGAGATACAGAAAACTTTGAGGAAGGAACTAGTAGTAATCCTTTTAATGAAGGAAGTAGTAGTAGACAATTTAATGAAGAAGGTGATATCTTTAGTATACTAAATGATTTACAAGCCCCTATTGAACATGAAGAGGAAATAGAGGAATTTCGTTTGGAAGATGAAATGTCGATGAATGTTGGGGTAAATATAGATGAAGATAGAACAAATACTATATTTCACGACTTATTGAATCAAGCACGTAATGAGTTGTACCCCGGTTGTTCTGAATTTTCGTCGTTGAATTTTTTGGTTAAGTTGA

mRNA sequence

TGGTTGTGTTGGCTATCCTGCAGTTATGGGACTTAAACGATGGATAAGGGTTGGATGAAACTTAGAAATAAGTTATCCCTTGAGTATAGACATGGAGTGATCCAATTTTTAGAATTTGTCAAGTTTCACGTTAATACCTACAGACGATTAAGGTGTCCATGCAAGAGACGTTTGAATTTAAATTGGAGCTCATTAGAGGATGTGGAACGACATCTGCTGACTGTTGGAATACCCCCCTACTACACAGAATGGGTGTATCATGGAGAGTCATTAGCTATAGAGATACAGAAAACTTTGAGGAAGGAACTAGTAGTAATCCTTTTAATGAAGGAAGTAGTAGTAGACAATTTAATGAAGAAGGTGATATCTTTAGTATACTAAATGATTTACAAGCCCCTATTGAACATGAAGAGGAAATAGAGGAATTTCGTTTGGAAGATGAAATGTCGATGAATGTTGGGGTAAATATAGATGAAGATAGAACAAATACTATATTTCACGACTTATTGAATCAAGCACGTAATGAGTTGTACCCCGGTTGTTCTGAATTTTCGTCGTTGAATTTTTTGGTTAAGTTGA

Coding sequence (CDS)

ATGCAAGAGACGTTTGAATTTAAATTGGAGCTCATTAGAGGATGTGGAACGACATCTGCTGACTGTTGGAATACCCCCCTACTACACAGAATGGGTGTATCATGGAGAGTCATTAGCTATAGAGATACAGAAAACTTTGAGGAAGGAACTAGTAGTAATCCTTTTAATGAAGGAAGTAGTAGTAGACAATTTAATGAAGAAGGTGATATCTTTAGTATACTAAATGATTTACAAGCCCCTATTGAACATGAAGAGGAAATAGAGGAATTTCGTTTGGAAGATGAAATGTCGATGAATGTTGGGGTAAATATAGATGAAGATAGAACAAATACTATATTTCACGACTTATTGAATCAAGCACGTAATGAGTTGTACCCCGGTTGTTCTGAATTTTCGTCGTTGAATTTTTTGGTTAAGTTG

Protein sequence

MQETFEFKLELIRGCGTTSADCWNTPLLHRMGVSWRVISYRDTENFEEGTSSNPFNEGSSSRQFNEEGDIFSILNDLQAPIEHEEEIEEFRLEDEMSMNVGVNIDEDRTNTIFHDLLNQARNELYPGCSEFSSLNFLVKL
Homology
[Close]
BLAST of MELO3C035332.2.1 vs. NCBI nr
Match: XP_008455800.1 (PREDICTED: uncharacterized protein LOC103495895 [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 1.3e-07
Identity = 35/72 (48.61%), Postives = 46/72 (63.89%), Query Frame = 0 

Query: 69  DIFSILNDLQAPIEHEEEIEEFRLEDEMSMNVGVNIDEDRTNTIFHDLLNQARNELYPGC 128
           DI  +L DLQ  +   E  E F   D     V  ++DE  T+ +F +L+N+ARN LYPGC
Sbjct: 89  DILDLLTDLQGSMIARE--ENFDDGDGFDDEVPEDVDEINTSNVFEELMNEARNPLYPGC 148

Query: 129 SEFSSLNFLVKL 141
           ++FSSLNFLVKL
Sbjct: 149 TKFSSLNFLVKL 158

[Close]
BLAST of MELO3C035332.2.1 vs. TrEMBL
Match: tr|A0A1S3C1V3|A0A1S3C1V3_CUCME (uncharacterized protein LOC103495895 OS=Cucumis melo OX=3656 GN=LOC103495895 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 8.5e-08
Identity = 35/72 (48.61%), Postives = 46/72 (63.89%), Query Frame = 0 

Query: 69  DIFSILNDLQAPIEHEEEIEEFRLEDEMSMNVGVNIDEDRTNTIFHDLLNQARNELYPGC 128
           DI  +L DLQ  +   E  E F   D     V  ++DE  T+ +F +L+N+ARN LYPGC
Sbjct: 89  DILDLLTDLQGSMIARE--ENFDDGDGFDDEVPEDVDEINTSNVFEELMNEARNPLYPGC 148

Query: 129 SEFSSLNFLVKL 141
           ++FSSLNFLVKL
Sbjct: 149 TKFSSLNFLVKL 158

The following BLAST results are available for this feature:
BLAST of MELO3C035332.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008455800.11.3e-0748.61PREDICTED: uncharacterized protein LOC103495895 [Cucumis melo][more]
BLAST of MELO3C035332.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C035332.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C035332.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C1V3|A0A1S3C1V3_CUCME8.5e-0848.61uncharacterized protein LOC103495895 OS=Cucumis melo OX=3656 GN=LOC103495895 PE=... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0016740 transferase activity
molecular_function GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C035332.2MELO3C035332.2gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C035332.2.1MELO3C035332.2.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035332.2.1.five_prime_UTR.2MELO3C035332.2.1.five_prime_UTR.2five_prime_UTR
MELO3C035332.2.1.five_prime_UTR.1MELO3C035332.2.1.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035332.2.1.exon.2MELO3C035332.2.1.exon.2exon
MELO3C035332.2.1.exon.1MELO3C035332.2.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035332.2.1.CDS.1MELO3C035332.2.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035332.2.1.three_prime_UTR.1MELO3C035332.2.1.three_prime_UTR.1three_prime_UTR