MELO3C035251.2.1 (mRNA) Melon (DHL92) v3.6.1

NameMELO3C035251.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Description60S ribosomal protein L36
Locationchr12 : 154174 .. 154752 (-)
Sequence length579
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTTCCTCGCCTTCAATCACTTGGTTAAGCTCCAGACAAGAAGGCAATGGCTCGAAGCAGCCGAATACTGGTCTCTTTGTGGGACTTAACAAAGGACACATAGTTAGAAAGAAAGAGTTGGCTCCCCTCCCCACACATCCTAGAGGAAAAAGTAGCAAAATAGTTCTCTTTGTGGGGAGTTTGATTTGTGAAGTTGTTGGCTTTGCCCACACAAGAAGAGAATAACTGAGCTTCTTAAAGTTGGAAAGGACAAAAGAGCACTTAAAGTGGCCAAGAGAAAGTTGGGAATTCACAAGAGAGCCAAGAAGAAGAGAGAAGAAATGTCCAGCGTACTCCGCAACGTGAGAGCTGGTGCAGGCGCGAAAAAGAAGAAATGAAACTAGCATGGTTATTGTGGAGCTTCTAATTCCCATAATGTTAGGGACGTGTTCTAGATTTTGTTATTTTTTTGTTATCCAGAATGATATTCAATGGATTTTTTAACATTACATTAGATGAATTGTGATGCTATTAGAACTTAAATTTAAATTTCAACAAGTATTTTTTCTTTAATAGAACCTTGTGGGTCGTTTGTATCT

mRNA sequence

GTTTTCCTCGCCTTCAATCACTTGGTTAAGCTCCAGACAAGAAGGCAATGGCTCGAAGCAGCCGAATACTGGTCTCTTTGTGGGACTTAACAAAGGACACATAGTTAGAAAGAAAGAGTTGGCTCCCCTCCCCACACATCCTAGAGGAAAAAGTAGCAAAATAGTTCTCTTTGTGGGGAGTTTGATTTGTGAAGTTGTTGGCTTTGCCCACACAAGAAGAGAATAACTGAGCTTCTTAAAGTTGGAAAGGACAAAAGAGCACTTAAAGTGGCCAAGAGAAAGTTGGGAATTCACAAGAGAGCCAAGAAGAAGAGAGAAGAAATGTCCAGCGTACTCCGCAACGTGAGAGCTGGTGCAGGCGCGAAAAAGAAGAAATGAAACTAGCATGGTTATTGTGGAGCTTCTAATTCCCATAATGTTAGGGACGTGTTCTAGATTTTGTTATTTTTTTGTTATCCAGAATGATATTCAATGGATTTTTTAACATTACATTAGATGAATTGTGATGCTATTAGAACTTAAATTTAAATTTCAACAAGTATTTTTTCTTTAATAGAACCTTGTGGGTCGTTTGTATCT

Coding sequence (CDS)

TTTTCCTCGCCTTCAATCACTTGGTTAAGCTCCAGACAAGAAGGCAATGGCTCGAAGCAGCCGAATACTGGTCTCTTTGTGGGACTTAACAAAGGACACATAGTTAGAAAGAAAGAGTTGGCTCCCCTCCCCACACATCCTAGAGGAAAAAGTAGCAAAATAGTTCTCTTTGTGGGGAGTTTGATTTGTGAAGTTGTTGGCTTTGCCCACACAAGAAGAGAATAA

Protein sequence

FSSPSITWLSSRQEGNGSKQPNTGLFVGLNKGHIVRKKELAPLPTHPRGKSSKIVLFVGSLICEVVGFAHTRRE
BLAST of MELO3C035251.2.1 vs. NCBI nr
Match: XP_004140771.1 (PREDICTED: 60S ribosomal protein L36-2-like [Cucumis sativus] >XP_004152381.1 PREDICTED: 60S ribosomal protein L36-2-like [Cucumis sativus] >XP_008436991.1 PREDICTED: 60S ribosomal protein L36-2-like [Cucumis melo] >XP_008439254.1 PREDICTED: 60S ribosomal protein L36-2-like [Cucumis melo] >ADN34294.1 60S ribosomal protein l36e [Cucumis melo subsp. melo] >KGN50297.1 hypothetical protein Csa_5G166410 [Cucumis sativus] >KGN57388.1 hypothetical protein Csa_3G182240 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-12
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 0

Query: 19 KQPNTGLFVGLNKGHIVRKKELAPLPTHPRGKSSKIVLFVGSLICEVVGFA 70
          KQPNTGLFVGLNKGHIV KKELAP P+  +GKSSK VLFV SLI EV GFA
Sbjct: 4  KQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFA 54

BLAST of MELO3C035251.2.1 vs. NCBI nr
Match: XP_022945858.1 (60S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022958049.1 60S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022958050.1 60S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022995694.1 60S ribosomal protein L36-2-like [Cucurbita maxima] >XP_023532485.1 60S ribosomal protein L36-2-like [Cucurbita pepo subsp. pepo] >XP_023532486.1 60S ribosomal protein L36-2-like [Cucurbita pepo subsp. pepo] >XP_023541175.1 60S ribosomal protein L36-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-12
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 0

Query: 19 KQPNTGLFVGLNKGHIVRKKELAPLPTHPRGKSSKIVLFVGSLICEVVGFA 70
          KQPNTGLFVGLNKGHIV KKELAP P+  +GKSSK VLFV SLI EV GFA
Sbjct: 4  KQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFA 54

BLAST of MELO3C035251.2.1 vs. NCBI nr
Match: XP_002305746.1 (60S ribosomal protein L36-2 [Populus trichocarpa] >ABK94139.1 unknown [Populus trichocarpa] >ABK95527.1 unknown [Populus trichocarpa] >PNT39743.1 hypothetical protein POPTR_004G057000v3 [Populus trichocarpa] >PNT39744.1 hypothetical protein POPTR_004G057000v3 [Populus trichocarpa])

HSP 1 Score: 80.5 bits (197), Expect = 2.7e-12
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 0

Query: 19 KQPNTGLFVGLNKGHIVRKKELAPLPTHPRGKSSKIVLFVGSLICEVVGFA 70
          KQPNTGLFVGLNKGHIV KKELAP P+  +GK+SK VLFV SLI EV GFA
Sbjct: 4  KQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFA 54

BLAST of MELO3C035251.2.1 vs. NCBI nr
Match: XP_011008473.1 (PREDICTED: 60S ribosomal protein L36-1-like isoform X1 [Populus euphratica])

HSP 1 Score: 80.5 bits (197), Expect = 2.7e-12
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 0

Query: 19 KQPNTGLFVGLNKGHIVRKKELAPLPTHPRGKSSKIVLFVGSLICEVVGFA 70
          KQPNTGLFVGLNKGHIV KKELAP P+  +GK+SK VLFV SLI EV GFA
Sbjct: 4  KQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFA 54

BLAST of MELO3C035251.2.1 vs. NCBI nr
Match: XP_011008474.1 (PREDICTED: 60S ribosomal protein L36-2-like isoform X2 [Populus euphratica])

HSP 1 Score: 80.5 bits (197), Expect = 2.7e-12
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 0

Query: 19 KQPNTGLFVGLNKGHIVRKKELAPLPTHPRGKSSKIVLFVGSLICEVVGFA 70
          KQPNTGLFVGLNKGHIV KKELAP P+  +GK+SK VLFV SLI EV GFA
Sbjct: 4  KQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFA 54

BLAST of MELO3C035251.2.1 vs. TAIR10
Match: AT2G37600.1 (Ribosomal protein L36e family protein)

HSP 1 Score: 62.4 bits (150), Expect = 1.4e-10
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 0

Query: 23 TGLFVGLNKGHIVRKKELAPLPTHPRGKSSKIVLFVGSLICEVVGFA 70
          TGLFVGLNKGH+V ++ELAP P   +GK+SK  +F+  LI EV G A
Sbjct: 8  TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMA 54

BLAST of MELO3C035251.2.1 vs. TAIR10
Match: AT3G53740.2 (Ribosomal protein L36e family protein)

HSP 1 Score: 62.4 bits (150), Expect = 1.4e-10
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 0

Query: 20 QPNTGLFVGLNKGHIVRKKELAPLPTHPRGKSSKIVLFVGSLICEVVGFA 70
          Q  TGLFVGLNKGH+V ++ELAP P   +GK+SK  +F+ +LI EV G A
Sbjct: 5  QVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQA 54

BLAST of MELO3C035251.2.1 vs. TAIR10
Match: AT5G02450.1 (Ribosomal protein L36e family protein)

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-09
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 0

Query: 23 TGLFVGLNKGHIVRKKELAPLPTHPRGKSSKIVLFVGSLICEVVGFA 70
          TGLFVGLNKGH+V K+E  P P + +GK+SK  +F+ +LI EV G A
Sbjct: 4  TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQA 50

BLAST of MELO3C035251.2.1 vs. Swiss-Prot
Match: sp|P52866|RL36_DAUCA (60S ribosomal protein L36 OS=Daucus carota OX=4039 GN=RPL36 PE=3 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-12
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 0

Query: 19 KQPNTGLFVGLNKGHIVRKKELAPLPTHPRGKSSKIVLFVGSLICEVVGF 69
          KQPNTGLFVGLNKGHIV KKELAP P+  +GK+SK   FV +LI EV GF
Sbjct: 4  KQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGF 53

BLAST of MELO3C035251.2.1 vs. Swiss-Prot
Match: sp|O80929|RL361_ARATH (60S ribosomal protein L36-1 OS=Arabidopsis thaliana OX=3702 GN=RPL36A PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.5e-09
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 0

Query: 23 TGLFVGLNKGHIVRKKELAPLPTHPRGKSSKIVLFVGSLICEVVGFA 70
          TGLFVGLNKGH+V ++ELAP P   +GK+SK  +F+  LI EV G A
Sbjct: 8  TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMA 54

BLAST of MELO3C035251.2.1 vs. Swiss-Prot
Match: sp|Q9M352|RL362_ARATH (60S ribosomal protein L36-2 OS=Arabidopsis thaliana OX=3702 GN=RPL36B PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.5e-09
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 0

Query: 20 QPNTGLFVGLNKGHIVRKKELAPLPTHPRGKSSKIVLFVGSLICEVVGFA 70
          Q  TGLFVGLNKGH+V ++ELAP P   +GK+SK  +F+ +LI EV G A
Sbjct: 5  QVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQA 54

BLAST of MELO3C035251.2.1 vs. Swiss-Prot
Match: sp|Q9LZ57|RL363_ARATH (60S ribosomal protein L36-3 OS=Arabidopsis thaliana OX=3702 GN=RPL36C PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.1e-08
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 0

Query: 23 TGLFVGLNKGHIVRKKELAPLPTHPRGKSSKIVLFVGSLICEVVGFA 70
          TGLFVGLNKGH+V K+E  P P + +GK+SK  +F+ +LI EV G A
Sbjct: 4  TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQA 50

BLAST of MELO3C035251.2.1 vs. Swiss-Prot
Match: sp|Q92365|RL36A_SCHPO (60S ribosomal protein L36-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl3601 PE=3 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 3.7e-05
Identity = 23/50 (46.00%), Postives = 32/50 (64.00%), Query Frame = 0

Query: 24 GLFVGLNKGHIVRKKELAPLPTHPRGKSSKIVLFVGSLICEVVGFAHTRR 74
          GL VGLNKG ++ K++L   P+  +G+ SK   FV S++ EV GFA   R
Sbjct: 4  GLVVGLNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYER 53

BLAST of MELO3C035251.2.1 vs. TrEMBL
Match: tr|A0A0A0L6L0|A0A0A0L6L0_CUCSA (60S ribosomal protein L36 OS=Cucumis sativus OX=3659 GN=Csa_3G182240 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.9e-13
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 0

Query: 19 KQPNTGLFVGLNKGHIVRKKELAPLPTHPRGKSSKIVLFVGSLICEVVGFA 70
          KQPNTGLFVGLNKGHIV KKELAP P+  +GKSSK VLFV SLI EV GFA
Sbjct: 4  KQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFA 54

BLAST of MELO3C035251.2.1 vs. TrEMBL
Match: tr|A0A1S3AYD7|A0A1S3AYD7_CUCME (60S ribosomal protein L36 OS=Cucumis melo OX=3656 GN=LOC103484093 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.9e-13
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 0

Query: 19 KQPNTGLFVGLNKGHIVRKKELAPLPTHPRGKSSKIVLFVGSLICEVVGFA 70
          KQPNTGLFVGLNKGHIV KKELAP P+  +GKSSK VLFV SLI EV GFA
Sbjct: 4  KQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFA 54

BLAST of MELO3C035251.2.1 vs. TrEMBL
Match: tr|E5GCU5|E5GCU5_CUCME (60S ribosomal protein L36 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.9e-13
Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 0

Query: 19 KQPNTGLFVGLNKGHIVRKKELAPLPTHPRGKSSKIVLFVGSLICEVVGFA 70
          KQPNTGLFVGLNKGHIV KKELAP P+  +GKSSK VLFV SLI EV GFA
Sbjct: 4  KQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFA 54

BLAST of MELO3C035251.2.1 vs. TrEMBL
Match: tr|A9PCN6|A9PCN6_POPTR (60S ribosomal protein L36 OS=Populus trichocarpa OX=3694 GN=POPTR_004G057000v3 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-12
Identity = 40/51 (78.43%), Postives = 43/51 (84.31%), Query Frame = 0

Query: 19 KQPNTGLFVGLNKGHIVRKKELAPLPTHPRGKSSKIVLFVGSLICEVVGFA 70
          KQPNTGLFVGLNKGHIV KKELAP P+  +GK+SK VLFV SLI EV GFA
Sbjct: 4  KQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFA 54

BLAST of MELO3C035251.2.1 vs. TrEMBL
Match: tr|A9P9I5|A9P9I5_POPTR (60S ribosomal protein L36 OS=Populus trichocarpa OX=3694 GN=POPTR_015G145800v3 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.3e-12
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 0

Query: 19 KQPNTGLFVGLNKGHIVRKKELAPLPTHPRGKSSKIVLFVGSLICEVVGFA 70
          KQPNTGLFVGLNKGH+V KK+LAP P+  +GKSSK VLFV SLI EV GFA
Sbjct: 4  KQPNTGLFVGLNKGHVVTKKDLAPRPSDRKGKSSKRVLFVRSLIREVAGFA 54

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004140771.11.2e-1280.39PREDICTED: 60S ribosomal protein L36-2-like [Cucumis sativus] >XP_004152381.1 PR... [more]
XP_022945858.11.2e-1280.3960S ribosomal protein L36-2-like [Cucurbita moschata] >XP_022958049.1 60S riboso... [more]
XP_002305746.12.7e-1278.4360S ribosomal protein L36-2 [Populus trichocarpa] >ABK94139.1 unknown [Populus t... [more]
XP_011008473.12.7e-1278.43PREDICTED: 60S ribosomal protein L36-1-like isoform X1 [Populus euphratica][more]
XP_011008474.12.7e-1278.43PREDICTED: 60S ribosomal protein L36-2-like isoform X2 [Populus euphratica][more]
Match NameE-valueIdentityDescription
AT2G37600.11.4e-1059.57Ribosomal protein L36e family protein[more]
AT3G53740.21.4e-1058.00Ribosomal protein L36e family protein[more]
AT5G02450.11.2e-0957.45Ribosomal protein L36e family protein[more]
Match NameE-valueIdentityDescription
sp|P52866|RL36_DAUCA1.1e-1272.0060S ribosomal protein L36 OS=Daucus carota OX=4039 GN=RPL36 PE=3 SV=2[more]
sp|O80929|RL361_ARATH2.5e-0959.5760S ribosomal protein L36-1 OS=Arabidopsis thaliana OX=3702 GN=RPL36A PE=3 SV=1[more]
sp|Q9M352|RL362_ARATH2.5e-0958.0060S ribosomal protein L36-2 OS=Arabidopsis thaliana OX=3702 GN=RPL36B PE=3 SV=1[more]
sp|Q9LZ57|RL363_ARATH2.1e-0857.4560S ribosomal protein L36-3 OS=Arabidopsis thaliana OX=3702 GN=RPL36C PE=3 SV=1[more]
sp|Q92365|RL36A_SCHPO3.7e-0546.0060S ribosomal protein L36-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 2484... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0L6L0|A0A0A0L6L0_CUCSA7.9e-1380.3960S ribosomal protein L36 OS=Cucumis sativus OX=3659 GN=Csa_3G182240 PE=3 SV=1[more]
tr|A0A1S3AYD7|A0A1S3AYD7_CUCME7.9e-1380.3960S ribosomal protein L36 OS=Cucumis melo OX=3656 GN=LOC103484093 PE=3 SV=1[more]
tr|E5GCU5|E5GCU5_CUCME7.9e-1380.3960S ribosomal protein L36 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1[more]
tr|A9PCN6|A9PCN6_POPTR1.8e-1278.4360S ribosomal protein L36 OS=Populus trichocarpa OX=3694 GN=POPTR_004G057000v3 P... [more]
tr|A9P9I5|A9P9I5_POPTR2.3e-1276.4760S ribosomal protein L36 OS=Populus trichocarpa OX=3694 GN=POPTR_015G145800v3 P... [more]
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR000509Ribosomal_L36e
IPR038097L36e_sf
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
cellular_component GO:0030529 intracellular ribonucleoprotein complex
molecular_function GO:0003735 structural constituent of ribosome

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C035251.2MELO3C035251.2gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035251.2.1.five_prime_UTR.1MELO3C035251.2.1.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035251.2.1.CDS.1MELO3C035251.2.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035251.2.1.three_prime_UTR.1MELO3C035251.2.1.three_prime_UTR.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C035251.2.1.exon.1MELO3C035251.2.1.exon.1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C035251.2.1MELO3C035251.2.1-proteinpolypeptide


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038097Ribosomal protein L36e domain superfamilyGENE3DG3DSA:1.10.10.1760coord: 14..74
e-value: 4.1E-9
score: 38.3
IPR000509Ribosomal protein L36ePFAMPF01158Ribosomal_L36ecoord: 23..73
e-value: 4.0E-9
score: 36.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23