MELO3C035125.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C035125.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Transmembrane protein, putative
Location	chr11 : 24127294 .. 24127758 (+)
Sequence length	465

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAACAAACACTTATTGGAGTCCTATTTGCATTCACGTTGGCCCAACGTCAGATTTTACTAACGTTGGAGATATTAATGAACAACAATAAGCGTCTCCCACATACACCGCCCGATACACGCCATAGAATTAGGGAGCTTGCTTACTTTCGCATGATACACGGGTCAGATCTTGTGTGTCGGCAAAGCACGCGGATGGATAGGCGAACATTCGCAATTCTATGCCATTTACTTAGAAATGTGGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACCACGTCATCCAACGAGAATTTGTACGGTCTGGTGAGACAGTATCTCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACCTGGTCCGGTAACAAGTAAACTGCAATGA

mRNA sequence

ATGGATGAACAAACACTTATTGGAGTCCTATTTGCATTCACGTTGGCCCAACGTCAGATTTTACTAACGTTGGAGATATTAATGAACAACAATAAGCGTCTCCCACATACACCGCCCGATACACGCCATAGAATTAGGGAGCTTGCTTACTTTCGCATGATACACGGGTCAGATCTTGTGTGTCGGCAAAGCACGCGGATGGATAGGCGAACATTCGCAATTCTATGCCATTTACTTAGAAATGTGGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACCACGTCATCCAACGAGAATTTGTACGGTCTGGTGAGACAGTATCTCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACCTGGTCCGGTAACAAGTAAACTGCAATGA

Coding sequence (CDS)

ATGGATGAACAAACACTTATTGGAGTCCTATTTGCATTCACGTTGGCCCAACGTCAGATTTTACTAACGTTGGAGATATTAATGAACAACAATAAGCGTCTCCCACATACACCGCCCGATACACGCCATAGAATTAGGGAGCTTGCTTACTTTCGCATGATACACGGGTCAGATCTTGTGTGTCGGCAAAGCACGCGGATGGATAGGCGAACATTCGCAATTCTATGCCATTTACTTAGAAATGTGGCTGGTCTTTCTTCAACTGAAATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTCGCTCATGACGTGAAGAACCACGTCATCCAACGAGAATTTGTACGGTCTGGTGAGACAGTATCTCGACATTTCAACATCGTATTGTTGGCTGTTCTTCGACTGTACGAGGAGTTGATAAAGAGACCTGGTCCGGTAACAAGTAAACTGCAATGA

Protein sequence

MDEQTLIGVLFAFTLAQRQILLTLEILMNNNKRLPHTPPDTRHRIRELAYFRMIHGSDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNHVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPGPVTSKLQ

Homology

[Close]

BLAST of MELO3C035125.2.1 vs. NCBI nr
Match: XP_016899496.1 (PREDICTED: uncharacterized protein LOC107990551 [Cucumis melo])

HSP 1 Score: 245.0 bits (624), Expect = 1.7e-61
Identity = 124/151 (82.12%), Postives = 140/151 (92.72%), Query Frame = 0


Query: 1   MDEQTLIGVLFAFTLAQRQILLTLEILMNNNKRLPHTPPDTRHRIRELAYFRMIHGSDLV 60
           MD+QTL+GVL AFTLAQRQILLTLE+LMN+N+R+ +TP DT +RIR+LAYFRMIH SDLV
Sbjct: 1   MDQQTLLGVLTAFTLAQRQILLTLELLMNDNRRITYTPFDTCNRIRQLAYFRMIHESDLV 60

Query: 61  CRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNHVIQREFVRS 120
           CRQSTRMDRRTFAILCHLLR V+ LSS EI+DVEEMVAMFLHVLAHDVKNHVIQR+FVRS
Sbjct: 61  CRQSTRMDRRTFAILCHLLRTVSVLSSIEIIDVEEMVAMFLHVLAHDVKNHVIQRKFVRS 120

Query: 121 GETVSRHFNIVLLAVLRLYEELIKRPGPVTS 152
           GETVSRHFN+VLL V+RLYE+LIKRP  VT+
Sbjct: 121 GETVSRHFNLVLLVVVRLYEKLIKRPVSVTN 151

[Close]

BLAST of MELO3C035125.2.1 vs. NCBI nr
Match: XP_008454692.1 (PREDICTED: uncharacterized protein LOC103495048 [Cucumis melo])

HSP 1 Score: 215.7 bits (548), Expect = 1.1e-52
Identity = 105/149 (70.47%), Postives = 127/149 (85.23%), Query Frame = 0


Query: 1   MDEQTLIGVLFAFTLAQRQILLTLEILMNNNKRLPHTPPDTRHRIRELAYFRMIHGSDLV 60
           M E  L  ++  F  +QRQ+LLTLE+L N+ KR+ H P + RHRIR+LAYFRMIHGSDLV
Sbjct: 1   MGEHELAYIVNVFIASQRQLLLTLELLKNDTKRITHIPYEIRHRIRQLAYFRMIHGSDLV 60

Query: 61  CRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNHVIQREFVRS 120
           CRQSTRMD+R FAILCHLLR +A L+STE+VDVEEMVAM+LH+LAHDVKN VIQREF+RS
Sbjct: 61  CRQSTRMDQRCFAILCHLLRTIAELTSTEVVDVEEMVAMYLHILAHDVKNRVIQREFMRS 120

Query: 121 GETVSRHFNIVLLAVLRLYEELIKRPGPV 150
           GE +SRHFN+VLLAV+RL+ EL+K+P PV
Sbjct: 121 GEIISRHFNMVLLAVIRLHGELLKKPQPV 149

[Close]

BLAST of MELO3C035125.2.1 vs. NCBI nr
Match: XP_008463581.1 (PREDICTED: uncharacterized protein LOC103501690 [Cucumis melo])

HSP 1 Score: 186.8 bits (473), Expect = 5.5e-44
Identity = 94/137 (68.61%), Postives = 116/137 (84.67%), Query Frame = 0


Query: 15  LAQRQILLTLEILMNNNKRLPHTPPDTRHRIRELAYFRMIHGSDLVCRQSTRMDRRTFAI 74
           + Q Q+LL LE LMN+NKRLP TP +TRHRIR+LAYF+MIH S LVCR+ TR+DRRT  I
Sbjct: 1   MTQCQMLLMLEALMNDNKRLPQTPYNTRHRIRQLAYFQMIHKSHLVCREITRIDRRTLII 60

Query: 75  LCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNHVIQREFVRSGETVSRHFNIVLLA 134
           LC+LL+ VAGLS  EIVDVEEMVAMFL+VL H+VKN +IQ++FVRSGET S HFN+V+ A
Sbjct: 61  LCNLLKIVAGLSWIEIVDVEEMVAMFLYVLVHNVKNRIIQQKFVRSGETDSGHFNLVVFA 120

Query: 135 VLRLYEELIKRPGPVTS 152
           V+RLY+E+IK+P  VT+
Sbjct: 121 VVRLYDEMIKKPVLVTN 137

[Close]

BLAST of MELO3C035125.2.1 vs. NCBI nr
Match: ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 185.7 bits (470), Expect = 1.2e-43
Identity = 95/99 (95.96%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 53  MIHGSDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNHV 112
           MIH SDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKN V
Sbjct: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60

Query: 113 IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPGPVTS 152
           IQ+EFVRSGETVSRHFNIVLLAVLRLYEELIKRP PVTS
Sbjct: 61  IQQEFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTS 99

[Close]

BLAST of MELO3C035125.2.1 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 170.2 bits (430), Expect = 5.3e-39
Identity = 87/152 (57.24%), Postives = 112/152 (73.68%), Query Frame = 0


Query: 1   MDEQTLIGVLFAFTLAQRQILLTLEILMNNNKRLPHTPPDTRHRIRELAYFRMIHGSDLV 60
           MDE  L  ++ AF  +QRQ+LL LE+L N+ KR+ H P +TRHRIR+LAYFRMIHG+   
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGT--- 60

Query: 61  CRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNHVIQREFVRS 120
                                +AGL+STE+VDVEEMVAMFLH+LAHDVK+ VI+REF+RS
Sbjct: 61  ---------------------IAGLTSTEVVDVEEMVAMFLHILAHDVKSRVIKREFMRS 120

Query: 121 GETVSRHFNIVLLAVLRLYEELIKRPGPVTSK 153
           GET+SRHFN+VLLAV+RL+EEL+K+P PV ++
Sbjct: 121 GETISRHFNMVLLAVIRLHEELLKKPQPVPNE 128

[Close]

BLAST of MELO3C035125.2.1 vs. TAIR10
Match: AT5G41980.1 (Putative harbinger transposase-derived nuclease (InterPro:IPR006912))

HSP 1 Score: 68.2 bits (165), Expect = 5.2e-12
Identity = 32/94 (34.04%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 51  FRMIHGSDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKN 110
           +++++G +  C ++ RMD+  F  LC LL+    L  T  + +E  +A+FL ++ H+++ 
Sbjct: 32  YQILNGPNEQCFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRT 91

Query: 111 HVIQREFVRSGETVSRHFNIVLLAVLRLYEELIK 145
             +Q  F  SGET+SRHFN VL AV+ + ++  +
Sbjct: 92  RAVQELFCYSGETISRHFNNVLNAVIAISKDFFQ 125

[Close]

BLAST of MELO3C035125.2.1 vs. TAIR10
Match: AT5G28730.1 (unknown protein)

HSP 1 Score: 50.8 bits (120), Expect = 8.5e-07
Identity = 30/91 (32.97%), Postives = 48/91 (52.75%), Query Frame = 0


Query: 54  IHGSDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNHVI 113
           I+ +++ C+   RM    F  LC +L    GL S+  + ++E VA+FL + A +     I
Sbjct: 17  IYSNEVSCQTLIRMSSEAFTQLCEILHGKYGLQSSTNISLDESVAIFLIICASNDTQRDI 76

Query: 114 QREFVRSGETVSRHFNIVLLAVLRLYEELIK 145
              F  + ET+ R F+ VL A+ RL  E I+
Sbjct: 77  ALRFGHAQETIWRKFHDVLKAMERLAVEYIR 107

[Close]

BLAST of MELO3C035125.2.1 vs. TrEMBL
Match: tr|A0A1S4DU32|A0A1S4DU32_CUCME (uncharacterized protein LOC107990551 OS=Cucumis melo OX=3656 GN=LOC107990551 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.1e-61
Identity = 124/151 (82.12%), Postives = 140/151 (92.72%), Query Frame = 0


Query: 1   MDEQTLIGVLFAFTLAQRQILLTLEILMNNNKRLPHTPPDTRHRIRELAYFRMIHGSDLV 60
           MD+QTL+GVL AFTLAQRQILLTLE+LMN+N+R+ +TP DT +RIR+LAYFRMIH SDLV
Sbjct: 1   MDQQTLLGVLTAFTLAQRQILLTLELLMNDNRRITYTPFDTCNRIRQLAYFRMIHESDLV 60

Query: 61  CRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNHVIQREFVRS 120
           CRQSTRMDRRTFAILCHLLR V+ LSS EI+DVEEMVAMFLHVLAHDVKNHVIQR+FVRS
Sbjct: 61  CRQSTRMDRRTFAILCHLLRTVSVLSSIEIIDVEEMVAMFLHVLAHDVKNHVIQRKFVRS 120

Query: 121 GETVSRHFNIVLLAVLRLYEELIKRPGPVTS 152
           GETVSRHFN+VLL V+RLYE+LIKRP  VT+
Sbjct: 121 GETVSRHFNLVLLVVVRLYEKLIKRPVSVTN 151

[Close]

BLAST of MELO3C035125.2.1 vs. TrEMBL
Match: tr|A0A1S3BYR8|A0A1S3BYR8_CUCME (uncharacterized protein LOC103495048 OS=Cucumis melo OX=3656 GN=LOC103495048 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 7.3e-53
Identity = 105/149 (70.47%), Postives = 127/149 (85.23%), Query Frame = 0


Query: 1   MDEQTLIGVLFAFTLAQRQILLTLEILMNNNKRLPHTPPDTRHRIRELAYFRMIHGSDLV 60
           M E  L  ++  F  +QRQ+LLTLE+L N+ KR+ H P + RHRIR+LAYFRMIHGSDLV
Sbjct: 1   MGEHELAYIVNVFIASQRQLLLTLELLKNDTKRITHIPYEIRHRIRQLAYFRMIHGSDLV 60

Query: 61  CRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNHVIQREFVRS 120
           CRQSTRMD+R FAILCHLLR +A L+STE+VDVEEMVAM+LH+LAHDVKN VIQREF+RS
Sbjct: 61  CRQSTRMDQRCFAILCHLLRTIAELTSTEVVDVEEMVAMYLHILAHDVKNRVIQREFMRS 120

Query: 121 GETVSRHFNIVLLAVLRLYEELIKRPGPV 150
           GE +SRHFN+VLLAV+RL+ EL+K+P PV
Sbjct: 121 GEIISRHFNMVLLAVIRLHGELLKKPQPV 149

[Close]

BLAST of MELO3C035125.2.1 vs. TrEMBL
Match: tr|A0A1S3CL59|A0A1S3CL59_CUCME (uncharacterized protein LOC103501690 OS=Cucumis melo OX=3656 GN=LOC103501690 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 3.6e-44
Identity = 94/137 (68.61%), Postives = 116/137 (84.67%), Query Frame = 0


Query: 15  LAQRQILLTLEILMNNNKRLPHTPPDTRHRIRELAYFRMIHGSDLVCRQSTRMDRRTFAI 74
           + Q Q+LL LE LMN+NKRLP TP +TRHRIR+LAYF+MIH S LVCR+ TR+DRRT  I
Sbjct: 1   MTQCQMLLMLEALMNDNKRLPQTPYNTRHRIRQLAYFQMIHKSHLVCREITRIDRRTLII 60

Query: 75  LCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNHVIQREFVRSGETVSRHFNIVLLA 134
           LC+LL+ VAGLS  EIVDVEEMVAMFL+VL H+VKN +IQ++FVRSGET S HFN+V+ A
Sbjct: 61  LCNLLKIVAGLSWIEIVDVEEMVAMFLYVLVHNVKNRIIQQKFVRSGETDSGHFNLVVFA 120

Query: 135 VLRLYEELIKRPGPVTS 152
           V+RLY+E+IK+P  VT+
Sbjct: 121 VVRLYDEMIKKPVLVTN 137

[Close]

BLAST of MELO3C035125.2.1 vs. TrEMBL
Match: tr|E5GBB2|E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 8.1e-44
Identity = 95/99 (95.96%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 53  MIHGSDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNHV 112
           MIH SDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKN V
Sbjct: 1   MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRV 60

Query: 113 IQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPGPVTS 152
           IQ+EFVRSGETVSRHFNIVLLAVLRLYEELIKRP PVTS
Sbjct: 61  IQQEFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTS 99

[Close]

BLAST of MELO3C035125.2.1 vs. TrEMBL
Match: tr|E5GCB5|E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.5e-39
Identity = 87/152 (57.24%), Postives = 112/152 (73.68%), Query Frame = 0


Query: 1   MDEQTLIGVLFAFTLAQRQILLTLEILMNNNKRLPHTPPDTRHRIRELAYFRMIHGSDLV 60
           MDE  L  ++ AF  +QRQ+LL LE+L N+ KR+ H P +TRHRIR+LAYFRMIHG+   
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGT--- 60

Query: 61  CRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNHVIQREFVRS 120
                                +AGL+STE+VDVEEMVAMFLH+LAHDVK+ VI+REF+RS
Sbjct: 61  ---------------------IAGLTSTEVVDVEEMVAMFLHILAHDVKSRVIKREFMRS 120

Query: 121 GETVSRHFNIVLLAVLRLYEELIKRPGPVTSK 153
           GET+SRHFN+VLLAV+RL+EEL+K+P PV ++
Sbjct: 121 GETISRHFNMVLLAVIRLHEELLKKPQPVPNE 128

The following BLAST results are available for this feature:

BLAST of MELO3C035125.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899496.1	1.7e-61	82.12	PREDICTED: uncharacterized protein LOC107990551 [Cucumis melo]	[more]
XP_008454692.1	1.1e-52	70.47	PREDICTED: uncharacterized protein LOC103495048 [Cucumis melo]	[more]
XP_008463581.1	5.5e-44	68.61	PREDICTED: uncharacterized protein LOC103501690 [Cucumis melo]	[more]
ADN33754.1	1.2e-43	95.96	retrotransposon protein [Cucumis melo subsp. melo]	[more]
ADN34114.1	5.3e-39	57.24	retrotransposon protein [Cucumis melo subsp. melo]	[more]

BLAST of MELO3C035125.2.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G41980.1	5.2e-12	34.04	Putative harbinger transposase-derived nuclease (InterPro:IPR006912)	[more]
AT5G28730.1	8.5e-07	32.97	unknown protein	[more]

BLAST of MELO3C035125.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C035125.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DU32\|A0A1S4DU32_CUCME	1.1e-61	82.12	uncharacterized protein LOC107990551 OS=Cucumis melo OX=3656 GN=LOC107990551 PE=...	[more]
tr\|A0A1S3BYR8\|A0A1S3BYR8_CUCME	7.3e-53	70.47	uncharacterized protein LOC103495048 OS=Cucumis melo OX=3656 GN=LOC103495048 PE=...	[more]
tr\|A0A1S3CL59\|A0A1S3CL59_CUCME	3.6e-44	68.61	uncharacterized protein LOC103501690 OS=Cucumis melo OX=3656 GN=LOC103501690 PE=...	[more]
tr\|E5GBB2\|E5GBB2_CUCME	8.1e-44	95.96	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|E5GCB5\|E5GCB5_CUCME	3.5e-39	57.24	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C035125.2	MELO3C035125.2	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C035125.2.1.CDS.1	MELO3C035125.2.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C035125.2.1.exon.1	MELO3C035125.2.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C035125.2.1	MELO3C035125.2.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22930:SF112	SUBFAMILY NOT NAMED	coord: 40..150
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 40..150