MELO3C033339.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C033339.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionTransposon protein, putative, CACTA, En/Spm sub-class
Locationchr08 : 20675592 .. 20676218 (+)
Sequence length504
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGTTTGCGTAAGCTTAACTCTAGTAAAGTTCGAAGTAAAAAGTGGATTCAAGTAGAGGATAATCGCACATTCAGTCGATGGCTGTCCACACGGGTAATCACTAGAATTATACTTTTTCATGTTTCTTTTGGATCTAACTAAATCCAATATATTGTGTAGGTTGCACATGCTCTCGAACTACCTAAAAATTCCATCACGCCTTCTTTAAGATGGATAGCTCACGGACCTTCTCCAGATGTGGCCACTTATTCTGGTTACATGATTAATGGTTATTACTATCATACAAAAAGTCATGATGATATGAGAAGAGTTCAAAATAGTGGAGTTAGTATAACTGCTACTACGATGCAAGTCTCTAGTTCTAAGGATAAAAACCCTGTCATGTTAGATATGACGTTTTATGGTGTAATTTAAAAGATATGGGAGATTGATTTGCATCAATTATCTTTTATTTTATTCAAGTGTGATTGGGTTGACAATAGAAGTGGAGTCAAAGTGGACGAGCTTGGGTTTACCATCATGGATCTCAAACGTATTGGACATAAACATTACAAGAAAAAGTATCTACATGACAGTTCATTGCATCAAAAATTAAAAGGAGGAAAGAAAAAACTGTCATAA

mRNA sequence

ATGGAGAGTTTGCGTAAGCTTAACTCTAGTAAAGTTCGAAGTAAAAAGTGGATTCAAGTAGAGGATAATCGCACATTCAGTCGATGGCTGTCCACACGGGTTGCACATGCTCTCGAACTACCTAAAAATTCCATCACGCCTTCTTTAAGATGGATAGCTCACGGACCTTCTCCAGATGTGGCCACTTATTCTGGTTACATGATTAATGGTTATTACTATCATACAAAAAGTCATGATGATATGAGAAGAGTTCAAAATAGTGGAGTTAGTATAACTGCTACTACGATGCAAGTCTCTAGTTCTAAGGATAAAAACCCTGTCATGTTAGATATGACGTTTTATGGTTGTGATTGGGTTGACAATAGAAGTGGAGTCAAAGTGGACGAGCTTGGGTTTACCATCATGGATCTCAAACGTATTGGACATAAACATTACAAGAAAAAGTATCTACATGACAGTTCATTGCATCAAAAATTAAAAGGAGGAAAGAAAAAACTGTCATAA

Coding sequence (CDS)

ATGGAGAGTTTGCGTAAGCTTAACTCTAGTAAAGTTCGAAGTAAAAAGTGGATTCAAGTAGAGGATAATCGCACATTCAGTCGATGGCTGTCCACACGGGTTGCACATGCTCTCGAACTACCTAAAAATTCCATCACGCCTTCTTTAAGATGGATAGCTCACGGACCTTCTCCAGATGTGGCCACTTATTCTGGTTACATGATTAATGGTTATTACTATCATACAAAAAGTCATGATGATATGAGAAGAGTTCAAAATAGTGGAGTTAGTATAACTGCTACTACGATGCAAGTCTCTAGTTCTAAGGATAAAAACCCTGTCATGTTAGATATGACGTTTTATGGTTGTGATTGGGTTGACAATAGAAGTGGAGTCAAAGTGGACGAGCTTGGGTTTACCATCATGGATCTCAAACGTATTGGACATAAACATTACAAGAAAAAGTATCTACATGACAGTTCATTGCATCAAAAATTAAAAGGAGGAAAGAAAAAACTGTCATAA

Protein sequence

MESLRKLNSSKVRSKKWIQVEDNRTFSRWLSTRVAHALELPKNSITPSLRWIAHGPSPDVATYSGYMINGYYYHTKSHDDMRRVQNSGVSITATTMQVSSSKDKNPVMLDMTFYGCDWVDNRSGVKVDELGFTIMDLKRIGHKHYKKKYLHDSSLHQKLKGGKKKLS
Homology
[Close]
BLAST of MELO3C033339.2.1 vs. NCBI nr
Match: XP_022156750.1 (uncharacterized protein LOC111023590 [Momordica charantia])

HSP 1 Score: 203.8 bits (517), Expect = 4.7e-49
Identity = 100/162 (61.73%), Postives = 119/162 (73.46%), Query Frame = 0 

Query: 1   MESLRKLNSSKVRSKKWIQVEDNRTFSRWLSTRVAHALELPKNSITPSLRWIAHGPSPDV 60
           M+ L KLN SK ++KKW+Q E NRTFS WL  RVA AL +P NSITPSLRWIAHGP PDV
Sbjct: 594 MDVLSKLNPSKSKNKKWLQDEHNRTFSSWLRERVALALAVPNNSITPSLRWIAHGPRPDV 653

Query: 61  ATYSGYMINGYYYHTKSHDDMRRVQNSGVSITATTMQVSSSKDKNPVMLDMTFYG----- 120
           ATY GY++NG +YHTK  DD R+VQNSGVSITA TMQVSS+KDK+P++ DMTFYG     
Sbjct: 654 ATYCGYVVNGCHYHTKRRDDRRKVQNSGVSITANTMQVSSAKDKSPIISDMTFYGVIQEI 713

Query: 121 --------------CDWVDNRSGVKVDELGFTIMDLKRIGHK 144
                          DWV+N++G+K+DELGFT +DL  IGHK
Sbjct: 714 WELDYHHLTVILFKSDWVENKNGLKIDELGFTTVDLNHIGHK 755

[Close]
BLAST of MELO3C033339.2.1 vs. NCBI nr
Match: XP_016903670.1 (PREDICTED: uncharacterized protein LOC107992312, partial [Cucumis melo])

HSP 1 Score: 174.9 bits (442), Expect = 2.3e-40
Identity = 86/97 (88.66%), Postives = 90/97 (92.78%), Query Frame = 0 

Query: 1   MESLRKLNSSKVRSKKWIQVEDNRTFSRWLSTRVAHALELPKNSITPSLRWIAHGPSPDV 60
           MESLRKLNS K RSKKWIQ E NR+FSRWLSTRVA ALE+PKNSITPSLRWIAHGPSPDV
Sbjct: 40  MESLRKLNSGKARSKKWIQEEHNRSFSRWLSTRVALALEVPKNSITPSLRWIAHGPSPDV 99

Query: 61  ATYSGYMINGYYYHTKSHDDMRRVQNSGVSITATTMQ 98
           ATYSGY+INGYYYHTK  DD+RRVQNSGVSITATTMQ
Sbjct: 100 ATYSGYIINGYYYHTKRCDDIRRVQNSGVSITATTMQ 136

[Close]
BLAST of MELO3C033339.2.1 vs. NCBI nr
Match: XP_024047604.1 (uncharacterized protein LOC18052269 isoform X1 [Citrus clementina] >XP_006445788.2 uncharacterized protein LOC18052269 isoform X1 [Citrus clementina])

HSP 1 Score: 164.1 bits (414), Expect = 4.1e-37
Identity = 81/162 (50.00%), Postives = 105/162 (64.81%), Query Frame = 0 

Query: 1   MESLRKLNSSKVRSKKWIQVEDNRTFSRWLSTRVAHALELPKNSITPSLRWIAHGPSPDV 60
           ME L+K   +K + KKW+Q E NRTF  WL  +V   L   +N+I+ +LRWIAHGP P+V
Sbjct: 292 MEFLKKKYPAKSKKKKWLQDEHNRTFIYWLRQKVEIQLNESRNNISEALRWIAHGPRPEV 351

Query: 61  ATYSGYMINGYYYHTKSHDDMRRVQNSGVSITATTMQVSSSKDKNPVMLDMTFYG----- 120
             Y GY INGY +HTK  DD+R +QNSGV + A T Q+SS+KDKNPV+ +M+FYG     
Sbjct: 352 IKYQGYEINGYRFHTKERDDLRVLQNSGVYLEANTFQISSAKDKNPVVANMSFYGVIQEI 411

Query: 121 --------------CDWVDNRSGVKVDELGFTIMDLKRIGHK 144
                         CDWV+N  G+K DELG T+++L RIGHK
Sbjct: 412 WELDYNKFKIPVFKCDWVENNHGIKNDELGATLVNLNRIGHK 453

[Close]
BLAST of MELO3C033339.2.1 vs. NCBI nr
Match: XP_015387931.1 (uncharacterized protein LOC107177903 [Citrus sinensis])

HSP 1 Score: 163.7 bits (413), Expect = 5.4e-37
Identity = 81/162 (50.00%), Postives = 105/162 (64.81%), Query Frame = 0 

Query: 1   MESLRKLNSSKVRSKKWIQVEDNRTFSRWLSTRVAHALELPKNSITPSLRWIAHGPSPDV 60
           ME L+K   +K + +KW+Q E NRTF  WL  +V   L   +N+I+ +LRWIAHGP P+V
Sbjct: 292 MEFLKKKYPAKSKKEKWLQDEHNRTFIYWLRQKVEIQLNESRNNISEALRWIAHGPRPEV 351

Query: 61  ATYSGYMINGYYYHTKSHDDMRRVQNSGVSITATTMQVSSSKDKNPVMLDMTFYG----- 120
             Y GY INGY +HTK  DD+R VQNSGV + A T Q+SS+KDKNPV+ +M+FYG     
Sbjct: 352 IKYQGYEINGYRFHTKERDDLRVVQNSGVYLEANTFQISSAKDKNPVVANMSFYGVIQEI 411

Query: 121 --------------CDWVDNRSGVKVDELGFTIMDLKRIGHK 144
                         CDWV+N  G+K DELG T+++L RIGHK
Sbjct: 412 WELDYNKFKIPVFKCDWVENNHGIKNDELGATLVNLNRIGHK 453

[Close]
BLAST of MELO3C033339.2.1 vs. NCBI nr
Match: XP_024041134.1 (uncharacterized protein LOC18043311 [Citrus clementina] >XP_006436763.2 uncharacterized protein LOC18043311 [Citrus clementina])

HSP 1 Score: 163.7 bits (413), Expect = 5.4e-37
Identity = 81/162 (50.00%), Postives = 105/162 (64.81%), Query Frame = 0 

Query: 1   MESLRKLNSSKVRSKKWIQVEDNRTFSRWLSTRVAHALELPKNSITPSLRWIAHGPSPDV 60
           ME L+K   +K + +KW+Q E NRTF  WL  +V   L   +N+I+ +LRWIAHGP P+V
Sbjct: 98  MEFLKKKYPAKSKKEKWLQDEHNRTFIYWLRQKVEIQLNESRNNISEALRWIAHGPRPEV 157

Query: 61  ATYSGYMINGYYYHTKSHDDMRRVQNSGVSITATTMQVSSSKDKNPVMLDMTFYG----- 120
             Y GY INGY +HTK  DD+R VQNSGV + A T Q+SS+KDKNPV+ +M+FYG     
Sbjct: 158 IKYQGYEINGYRFHTKERDDLRVVQNSGVYLEANTFQISSAKDKNPVVANMSFYGVIQEI 217

Query: 121 --------------CDWVDNRSGVKVDELGFTIMDLKRIGHK 144
                         CDWV+N  G+K DELG T+++L RIGHK
Sbjct: 218 WELDYNKFKIPVFKCDWVENNHGIKNDELGATLVNLNRIGHK 259

[Close]
BLAST of MELO3C033339.2.1 vs. TrEMBL
Match: tr|A0A1S4E6Q2|A0A1S4E6Q2_CUCME (uncharacterized protein LOC107992312 OS=Cucumis melo OX=3656 GN=LOC107992312 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.5e-40
Identity = 86/97 (88.66%), Postives = 90/97 (92.78%), Query Frame = 0 

Query: 1   MESLRKLNSSKVRSKKWIQVEDNRTFSRWLSTRVAHALELPKNSITPSLRWIAHGPSPDV 60
           MESLRKLNS K RSKKWIQ E NR+FSRWLSTRVA ALE+PKNSITPSLRWIAHGPSPDV
Sbjct: 40  MESLRKLNSGKARSKKWIQEEHNRSFSRWLSTRVALALEVPKNSITPSLRWIAHGPSPDV 99

Query: 61  ATYSGYMINGYYYHTKSHDDMRRVQNSGVSITATTMQ 98
           ATYSGY+INGYYYHTK  DD+RRVQNSGVSITATTMQ
Sbjct: 100 ATYSGYIINGYYYHTKRCDDIRRVQNSGVSITATTMQ 136

[Close]
BLAST of MELO3C033339.2.1 vs. TrEMBL
Match: tr|A5AWJ4|A5AWJ4_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_004106 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.1e-33
Identity = 75/162 (46.30%), Postives = 104/162 (64.20%), Query Frame = 0 

Query: 1   MESLRKLNSSKVRSKKWIQVEDNRTFSRWLSTRVAHALELPKNSITPSLRWIAHGPSPDV 60
           ME L+  N  + + +KW+Q E  RTF+ WL  ++  A+      I+ +L+WIAHGPS  V
Sbjct: 696 MEWLKLKNPRQSKRQKWLQDEHLRTFTYWLRKKIEAAIG-NNEPISETLKWIAHGPSHYV 755

Query: 61  ATYSGYMINGYYYHTKSHDDMRRVQNSGVSITATTMQVSSSKDKNPVMLDMTFYG----- 120
           + Y GY+ING  YHTK  DD+R  QNSGVSI A+TMQ++S+KD+NPV  ++ FYG     
Sbjct: 756 SKYHGYVINGCRYHTKERDDLRXTQNSGVSIVASTMQIASAKDQNPVFGELCFYGIITEI 815

Query: 121 --------------CDWVDNRSGVKVDELGFTIMDLKRIGHK 144
                         CDWVDN++G+KVD+LGFT++D  +I HK
Sbjct: 816 WDLDYTMFRIPVFKCDWVDNKNGIKVDDLGFTLVDFSKIAHK 856

[Close]
BLAST of MELO3C033339.2.1 vs. TrEMBL
Match: tr|A5AWV0|A5AWV0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_018163 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.0e-32
Identity = 73/162 (45.06%), Postives = 103/162 (63.58%), Query Frame = 0 

Query: 1   MESLRKLNSSKVRSKKWIQVEDNRTFSRWLSTRVAHALELPKNSITPSLRWIAHGPSPDV 60
           M+ L+     + + +KW+Q E  RTF+ WL  +V  A+   +  ++ +L+WIAHGPS  V
Sbjct: 605 MKWLKMKYPRQAKRQKWLQDEHMRTFTYWLRQKVEVAIG-NEEPVSETLKWIAHGPSHYV 664

Query: 61  ATYSGYMINGYYYHTKSHDDMRRVQNSGVSITATTMQVSSSKDKNPVMLDMTFYG----- 120
             Y GY+ING +YHTK  DD+R  QNSGV I ATTMQ++S+KDKNPV  ++ FYG     
Sbjct: 665 FKYHGYVINGCHYHTKERDDLRATQNSGVKIVATTMQIASAKDKNPVFGELCFYGVITEI 724

Query: 121 --------------CDWVDNRSGVKVDELGFTIMDLKRIGHK 144
                         CDWVDN++G+KVD+LGFT++D  ++ HK
Sbjct: 725 WDLDYTMFRIPIFKCDWVDNKNGIKVDDLGFTLVDFSKMAHK 765

[Close]
BLAST of MELO3C033339.2.1 vs. TrEMBL
Match: tr|A0A2P6QWC3|A0A2P6QWC3_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0414221 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.5e-32
Identity = 71/161 (44.10%), Postives = 99/161 (61.49%), Query Frame = 0 

Query: 1   MESLRKLNSSKVRSKKWIQVEDNRTFSRWLSTRVAHALELPKNSITPSLRWIAHGPSPDV 60
           ME L+       +++ W+  + N TF  W+  RV   L +P + I+ +LRWIA GP+PDV
Sbjct: 189 MEILKHTYPRFKKNENWLTNKQNLTFVSWIKERVLEELGIPNHGISETLRWIADGPNPDV 248

Query: 61  ATYSGYMINGYYYHTKSHDDMRRVQNSGVSITATTMQVSSSKDKNPVMLDMTFYG----- 120
            T+  YM+NG +++TK  DD+R+VQNSGV + A  +QVSS+KDKNP + DM FYG     
Sbjct: 249 PTFCSYMVNGVHFNTKERDDVRKVQNSGVFLNARALQVSSAKDKNPKLDDMQFYGVITSI 308

Query: 121 --------------CDWVDNRSGVKVDELGFTIMDLKRIGH 143
                         CDWV+N  G+ VDE GFT+++L RIGH
Sbjct: 309 WEMDYQQFRIPVFKCDWVENAKGIIVDEFGFTLVNLNRIGH 349

[Close]
BLAST of MELO3C033339.2.1 vs. TrEMBL
Match: tr|A5BX99|A5BX99_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_038839 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.9e-32
Identity = 73/162 (45.06%), Postives = 103/162 (63.58%), Query Frame = 0 

Query: 1   MESLRKLNSSKVRSKKWIQVEDNRTFSRWLSTRVAHALELPKNSITPSLRWIAHGPSPDV 60
           ME L+  N  + + +KW+Q E  RTF+ WL  ++  A+      I+ +L+WIAHGPS  V
Sbjct: 617 MEWLKSKNPRQSKRQKWLQDEHLRTFTYWLQKKIEDAIG-NNEPISETLKWIAHGPSHYV 676

Query: 61  ATYSGYMINGYYYHTKSHDDMRRVQNSGVSITATTMQVSSSKDKNPVMLDMTFYG----- 120
           + Y GY+ING  YHTK  D++R  QNSGVSI A+T+Q++S+KD+NPV  ++ FYG     
Sbjct: 677 SKYHGYVINGCQYHTKECDELRATQNSGVSIIASTLQIASAKDQNPVFGELCFYGIITEI 736

Query: 121 --------------CDWVDNRSGVKVDELGFTIMDLKRIGHK 144
                         CDWVDNR+G+KVD+LGFT++D  +  HK
Sbjct: 737 WDLDYTMFRIPVFKCDWVDNRNGIKVDDLGFTLVDFNKTTHK 777

The following BLAST results are available for this feature:
BLAST of MELO3C033339.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022156750.14.7e-4961.73uncharacterized protein LOC111023590 [Momordica charantia][more]
XP_016903670.12.3e-4088.66PREDICTED: uncharacterized protein LOC107992312, partial [Cucumis melo][more]
XP_024047604.14.1e-3750.00uncharacterized protein LOC18052269 isoform X1 [Citrus clementina] >XP_006445788... [more]
XP_015387931.15.4e-3750.00uncharacterized protein LOC107177903 [Citrus sinensis][more]
XP_024041134.15.4e-3750.00uncharacterized protein LOC18043311 [Citrus clementina] >XP_006436763.2 uncharac... [more]
BLAST of MELO3C033339.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C033339.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C033339.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E6Q2|A0A1S4E6Q2_CUCME1.5e-4088.66uncharacterized protein LOC107992312 OS=Cucumis melo OX=3656 GN=LOC107992312 PE=... [more]
tr|A5AWJ4|A5AWJ4_VITVI4.1e-3346.30Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_004106 PE=4 SV=1[more]
tr|A5AWV0|A5AWV0_VITVI2.0e-3245.06Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_018163 PE=4 SV=1[more]
tr|A0A2P6QWC3|A0A2P6QWC3_ROSCH3.5e-3244.10Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0414221 PE=4... [more]
tr|A5BX99|A5BX99_VITVI5.9e-3245.06Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_038839 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0005575 cellular_component
molecular_function GO:0008234 cysteine-type peptidase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C033339.2MELO3C033339.2gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C033339.2.1MELO3C033339.2.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C033339.2.1.CDS.1MELO3C033339.2.1.CDS.1CDS
MELO3C033339.2.1.CDS.2MELO3C033339.2.1.CDS.2CDS
MELO3C033339.2.1.CDS.3MELO3C033339.2.1.CDS.3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C033339.2.1.exon.1MELO3C033339.2.1.exon.1exon
MELO3C033339.2.1.exon.2MELO3C033339.2.1.exon.2exon
MELO3C033339.2.1.exon.3MELO3C033339.2.1.exon.3exon