MELO3C030593.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C030593.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Protein REDUCED WALL ACETYLATION 1
Location	chr04 : 18830476 .. 18830646 (-)
Sequence length	171

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCATTACTTTAATGCAAGAGAAATTTATAGTGTGCATCGTGTGTATGTGTTGCTCCTACGTGTGGATGACTGAATTTGGAAAATTTTCATATTACTATGCTTGTAAAGATTTTAGCCTCTCTAGATTTGCTCAGGCATGTTCTCCTATTGATTCTTCAATTTCTTGCTAG

mRNA sequence

ACCATTACTTTAATGCAAGAGAAATTTATAGTGTGCATCGTGTGTATGTGTTGCTCCTACGTGTGGATGACTGAATTTGGAAAATTTTCATATTACTATGCTTGTAAAGATTTTAGCCTCTCTAGATTTGCTCAGGCATGTTCTCCTATTGATTCTTCAATTTCTTGCTAG

Coding sequence (CDS)

ATGCAAGAGAAATTTATAGTGTGCATCGTGTGTATGTGTTGCTCCTACGTGTGGATGACTGAATTTGGAAAATTTTCATATTACTATGCTTGTAAAGATTTTAGCCTCTCTAGATTTGCTCAGGCATGTTCTCCTATTGATTCTTCAATTTCTTGCTAG

Protein sequence

MQEKFIVCIVCMCCSYVWMTEFGKFSYYYACKDFSLSRFAQACSPIDSSISC

Homology

[Close]

BLAST of MELO3C030593.2.1 vs. NCBI nr
Match: KGN47447.1 (hypothetical protein Csa_6G325400 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 6.7e-10
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 2   QEKFIVCIVCMCCSYVWMTEFGKFSYYYACKDFSLSRFAQACSPIDSSISC 53
           +E + V  VC+  +YVWMT FG FSYYYA KDFSLSRFAQACSP+DSSISC
Sbjct: 195 REIYNVGRVCV-AAYVWMTGFGNFSYYYARKDFSLSRFAQACSPVDSSISC 244

[Close]

BLAST of MELO3C030593.2.1 vs. NCBI nr
Match: XP_011461723.1 (PREDICTED: LOW QUALITY PROTEIN: CAS1 domain-containing protein 1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 52.4 bits (124), Expect = 5.5e-04
Identity = 25/42 (59.52%), Postives = 28/42 (66.67%), Query Frame = 0


Query: 4   KFIVCIVCMCCSYVWMTEFGKFSYYYACKDFSLSRFAQACSP 46
           +F   I      YVWMT FG FSYYY  KDFSL+RFAQ C+P
Sbjct: 197 EFYNAIRVFIAGYVWMTGFGNFSYYYVRKDFSLARFAQVCNP 238

[Close]

BLAST of MELO3C030593.2.1 vs. NCBI nr
Match: XP_015936787.1 (protein REDUCED WALL ACETYLATION 2 isoform X1 [Arachis duranensis] >XP_025610057.1 protein REDUCED WALL ACETYLATION 2-like isoform X1 [Arachis hypogaea])

HSP 1 Score: 51.6 bits (122), Expect = 9.3e-04
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 15  SYVWMTEFGKFSYYYACKDFSLSRFAQAC 44
           +YVWMT FG FSYYY  KDFSL+RFAQ C
Sbjct: 209 AYVWMTGFGNFSYYYVRKDFSLARFAQVC 237

[Close]

BLAST of MELO3C030593.2.1 vs. NCBI nr
Match: XP_015936800.1 (protein REDUCED WALL ACETYLATION 2 isoform X2 [Arachis duranensis] >XP_025610062.1 protein REDUCED WALL ACETYLATION 2-like isoform X2 [Arachis hypogaea])

HSP 1 Score: 51.6 bits (122), Expect = 9.3e-04
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 15  SYVWMTEFGKFSYYYACKDFSLSRFAQAC 44
           +YVWMT FG FSYYY  KDFSL+RFAQ C
Sbjct: 208 AYVWMTGFGNFSYYYVRKDFSLARFAQVC 236

[Close]

BLAST of MELO3C030593.2.1 vs. TAIR10
Match: AT5G46340.1 (O-acetyltransferase family protein)

HSP 1 Score: 47.4 bits (111), Expect = 3.2e-06
Identity = 20/27 (74.07%), Postives = 23/27 (85.19%), Query Frame = 0


Query: 15  SYVWMTEFGKFSYYYACKDFSLSRFAQ 42
           +YVWMT FG FSYYY  KDFS++RFAQ
Sbjct: 208 AYVWMTGFGNFSYYYVRKDFSVARFAQ 234

[Close]

BLAST of MELO3C030593.2.1 vs. TAIR10
Match: AT3G06550.2 (O-acetyltransferase family protein)

HSP 1 Score: 47.0 bits (110), Expect = 4.2e-06
Identity = 24/37 (64.86%), Postives = 25/37 (67.57%), Query Frame = 0


Query: 5   FIVCIVCMCCSYVWMTEFGKFSYYYACKDFSLSRFAQ 42
           FI C       YVWMT FG FSYYY  KDFSL+RFAQ
Sbjct: 207 FIAC-------YVWMTGFGNFSYYYIRKDFSLARFAQ 236

[Close]

BLAST of MELO3C030593.2.1 vs. TAIR10
Match: AT2G34410.1 (O-acetyltransferase family protein)

HSP 1 Score: 46.6 bits (109), Expect = 5.4e-06
Identity = 20/27 (74.07%), Postives = 22/27 (81.48%), Query Frame = 0


Query: 15  SYVWMTEFGKFSYYYACKDFSLSRFAQ 42
           +YVWMT FG FSYYY  KDFSL+RF Q
Sbjct: 208 AYVWMTGFGNFSYYYIRKDFSLARFTQ 234

[Close]

BLAST of MELO3C030593.2.1 vs. TAIR10
Match: AT1G29890.2 (O-acetyltransferase family protein)

HSP 1 Score: 45.4 bits (106), Expect = 1.2e-05
Identity = 24/43 (55.81%), Postives = 26/43 (60.47%), Query Frame = 0


Query: 4   KFIVCIVCMCCSYVWMTEFGKFSYYYACKDFSLSRFAQACSPI 47
           +F   I      YVWMT FG FSYYY  KDFSL+RF Q  S I
Sbjct: 202 EFYNAIRVFIAGYVWMTGFGNFSYYYIRKDFSLARFTQVRSTI 244

[Close]

BLAST of MELO3C030593.2.1 vs. Swiss-Prot
Match: sp|Q8L7C8|RWA1_ARATH (Protein REDUCED WALL ACETYLATION 1 OS=Arabidopsis thaliana OX=3702 GN=RWA1 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 5.7e-05
Identity = 20/27 (74.07%), Postives = 23/27 (85.19%), Query Frame = 0


Query: 15  SYVWMTEFGKFSYYYACKDFSLSRFAQ 42
           +YVWMT FG FSYYY  KDFS++RFAQ
Sbjct: 208 AYVWMTGFGNFSYYYVRKDFSVARFAQ 234

[Close]

BLAST of MELO3C030593.2.1 vs. Swiss-Prot
Match: sp|Q0WW17|RWA2_ARATH (Protein REDUCED WALL ACETYLATION 2 OS=Arabidopsis thaliana OX=3702 GN=RWA2 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 7.5e-05
Identity = 24/37 (64.86%), Postives = 25/37 (67.57%), Query Frame = 0


Query: 5   FIVCIVCMCCSYVWMTEFGKFSYYYACKDFSLSRFAQ 42
           FI C       YVWMT FG FSYYY  KDFSL+RFAQ
Sbjct: 207 FIAC-------YVWMTGFGNFSYYYIRKDFSLARFAQ 236

[Close]

BLAST of MELO3C030593.2.1 vs. Swiss-Prot
Match: sp|Q66GQ5|RWA3_ARATH (Protein REDUCED WALL ACETYLATION 3 OS=Arabidopsis thaliana OX=3702 GN=RWA3 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 9.8e-05
Identity = 20/27 (74.07%), Postives = 22/27 (81.48%), Query Frame = 0


Query: 15  SYVWMTEFGKFSYYYACKDFSLSRFAQ 42
           +YVWMT FG FSYYY  KDFSL+RF Q
Sbjct: 208 AYVWMTGFGNFSYYYIRKDFSLARFTQ 234

[Close]

BLAST of MELO3C030593.2.1 vs. Swiss-Prot
Match: sp|Q9FXG3|RWA4_ARATH (Protein REDUCED WALL ACETYLATION 4 OS=Arabidopsis thaliana OX=3702 GN=RWA4 PE=2 SV=2)

HSP 1 Score: 44.3 bits (103), Expect = 4.9e-04
Identity = 22/38 (57.89%), Postives = 24/38 (63.16%), Query Frame = 0


Query: 4   KFIVCIVCMCCSYVWMTEFGKFSYYYACKDFSLSRFAQ 42
           +F   I      YVWMT FG FSYYY  KDFSL+RF Q
Sbjct: 197 EFYNAIRVFIAGYVWMTGFGNFSYYYIRKDFSLARFTQ 234

[Close]

BLAST of MELO3C030593.2.1 vs. TrEMBL
Match: tr|A0A0A0KGC4|A0A0A0KGC4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G325400 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.4e-10
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 2   QEKFIVCIVCMCCSYVWMTEFGKFSYYYACKDFSLSRFAQACSPIDSSISC 53
           +E + V  VC+  +YVWMT FG FSYYYA KDFSLSRFAQACSP+DSSISC
Sbjct: 195 REIYNVGRVCV-AAYVWMTGFGNFSYYYARKDFSLSRFAQACSPVDSSISC 244

The following BLAST results are available for this feature:

BLAST of MELO3C030593.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47447.1	6.7e-10	72.55	hypothetical protein Csa_6G325400 [Cucumis sativus]	[more]
XP_011461723.1	5.5e-04	59.52	PREDICTED: LOW QUALITY PROTEIN: CAS1 domain-containing protein 1 [Fragaria vesca...	[more]
XP_015936787.1	9.3e-04	75.86	protein REDUCED WALL ACETYLATION 2 isoform X1 [Arachis duranensis] >XP_025610057...	[more]
XP_015936800.1	9.3e-04	75.86	protein REDUCED WALL ACETYLATION 2 isoform X2 [Arachis duranensis] >XP_025610062...	[more]

BLAST of MELO3C030593.2.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G46340.1	3.2e-06	74.07	O-acetyltransferase family protein	[more]
AT3G06550.2	4.2e-06	64.86	O-acetyltransferase family protein	[more]
AT2G34410.1	5.4e-06	74.07	O-acetyltransferase family protein	[more]
AT1G29890.2	1.2e-05	55.81	O-acetyltransferase family protein	[more]

BLAST of MELO3C030593.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8L7C8\|RWA1_ARATH	5.7e-05	74.07	Protein REDUCED WALL ACETYLATION 1 OS=Arabidopsis thaliana OX=3702 GN=RWA1 PE=2 ...	[more]
sp\|Q0WW17\|RWA2_ARATH	7.5e-05	64.86	Protein REDUCED WALL ACETYLATION 2 OS=Arabidopsis thaliana OX=3702 GN=RWA2 PE=1 ...	[more]
sp\|Q66GQ5\|RWA3_ARATH	9.8e-05	74.07	Protein REDUCED WALL ACETYLATION 3 OS=Arabidopsis thaliana OX=3702 GN=RWA3 PE=1 ...	[more]
sp\|Q9FXG3\|RWA4_ARATH	4.9e-04	57.89	Protein REDUCED WALL ACETYLATION 4 OS=Arabidopsis thaliana OX=3702 GN=RWA4 PE=2 ...	[more]

BLAST of MELO3C030593.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KGC4\|A0A0A0KGC4_CUCSA	4.4e-10	72.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G325400 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C030593.2	MELO3C030593.2	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C030593.2.1.five_prime_UTR.1	MELO3C030593.2.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C030593.2.1.exon.1	MELO3C030593.2.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C030593.2.1.CDS.1	MELO3C030593.2.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C030593.2.1	MELO3C030593.2.1-protein	polypeptide