MELO3C026853T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C026853T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	DNA-directed RNA polymerase subunit A
Location	chr12 : 3534778 .. 3535263 (-)
Sequence length	405

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCACTGAGGGAGTTGACGGGTGTAACACAAAGAGTAATCACATTATTGAAGTGCAACAAGTACTTGGCATTGAAGCTGCAAGAAAGTGTATTATTGAAGAGATCAAATATACCATGGAAAGTCATGGAATGAGCATAGACATACGTCATATGATGCTTTTAGGAGATTTGATGACATTCAGGGTAAGTAAGTTGTGTTGGGTTACAAAAAATTTACATGGCGTGTGTAGGTTGAGGCAATTAAATATTTTTGCTGTGTAACAGGGTGAAGTTCTTGGAATCACAAGATTTGGCATTCAAAAAATGGATAAAAGTGTACTGATGCTTGCTTCATTTGAGAAAACCGCGGACCATCTTTTTAATGCTTCTGTGAATGGAAGGGATGACAAAATTGAAGGAGTTAGTGAATGCGTAATCATGGGTATACCAATGCCGCTAGGCACTGGCATGTTAAAAGTTAGACAAAGGTATATCTTCTCCTAA

mRNA sequence

ATGGGCACTGAGGGAGTTGACGGGTGTAACACAAAGAGTAATCACATTATTGAAGTGCAACAAGTACTTGGCATTGAAGCTGCAAGAAAGTGTATTATTGAAGAGATCAAATATACCATGGAAAGTCATGGAATGAGCATAGACATACGTCATATGATGCTTTTAGGAGATTTGATGACATTCAGGGGTGAAGTTCTTGGAATCACAAGATTTGGCATTCAAAAAATGGATAAAAGTGTACTGATGCTTGCTTCATTTGAGAAAACCGCGGACCATCTTTTTAATGCTTCTGTGAATGGAAGGGATGACAAAATTGAAGGAGTTAGTGAATGCGTAATCATGGGTATACCAATGCCGCTAGGCACTGGCATGTTAAAAGTTAGACAAAGGTATATCTTCTCCTAA

Coding sequence (CDS)

ATGGGCACTGAGGGAGTTGACGGGTGTAACACAAAGAGTAATCACATTATTGAAGTGCAACAAGTACTTGGCATTGAAGCTGCAAGAAAGTGTATTATTGAAGAGATCAAATATACCATGGAAAGTCATGGAATGAGCATAGACATACGTCATATGATGCTTTTAGGAGATTTGATGACATTCAGGGGTGAAGTTCTTGGAATCACAAGATTTGGCATTCAAAAAATGGATAAAAGTGTACTGATGCTTGCTTCATTTGAGAAAACCGCGGACCATCTTTTTAATGCTTCTGTGAATGGAAGGGATGACAAAATTGAAGGAGTTAGTGAATGCGTAATCATGGGTATACCAATGCCGCTAGGCACTGGCATGTTAAAAGTTAGACAAAGGTATATCTTCTCCTAA

Protein sequence

MGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPLGTGMLKVRQRYIFS*

Homology

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BLAST of MELO3C026853T1 vs. Swiss-Prot
Match: NRPC1_ARATH (DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana GN=NRPC1 PE=2 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.9e-45
Identity = 91/130 (70.00%), Postives = 106/130 (81.54%), Query Frame = 1


Query: 1    MGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMT 60
            MGT G++G  T SN+++EV + LGIEAAR  II+EI   M +HGMSIDIRHMMLL D+MT
Sbjct: 1231 MGTPGINGRTTTSNNVVEVSKTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMMLLADVMT 1290

Query: 61   FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPL 120
            +RGEVLGI R GIQKMDKSVLM ASFE+T DHLF+A+ +G+ D IEGV+ECVIMGIPM L
Sbjct: 1291 YRGEVLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAASGKVDNIEGVTECVIMGIPMKL 1350

Query: 121  GTGMLKVRQR 131
            GTG+LKV QR
Sbjct: 1351 GTGILKVLQR 1360

[Close]

BLAST of MELO3C026853T1 vs. Swiss-Prot
Match: RPC1_CHICK (DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus GN=POLR3A PE=2 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.0e-42
Identity = 85/127 (66.93%), Postives = 101/127 (79.53%), Query Frame = 1


Query: 1    MGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMT 60
            M T GV G  T SN+  EV++ LGIEAAR  II EI+YTM +HGMSID RH+MLL DLMT
Sbjct: 1236 MATHGVKGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMT 1295

Query: 61   FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPL 120
            ++GEVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSEC+IMGIPM +
Sbjct: 1296 YKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNI 1355

Query: 121  GTGMLKV 128
            GTG+ K+
Sbjct: 1356 GTGLFKL 1362

[Close]

BLAST of MELO3C026853T1 vs. Swiss-Prot
Match: RPC1_HUMAN (DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens GN=POLR3A PE=1 SV=2)

HSP 1 Score: 172.2 bits (435), Expect = 4.0e-42
Identity = 85/127 (66.93%), Postives = 101/127 (79.53%), Query Frame = 1


Query: 1    MGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMT 60
            M T GV G  T SN+  EV++ LGIEAAR  II EI+YTM +HGMSID RH+MLL DLMT
Sbjct: 1236 MATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMT 1295

Query: 61   FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPL 120
            ++GEVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSEC+IMGIPM +
Sbjct: 1296 YKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNI 1355

Query: 121  GTGMLKV 128
            GTG+ K+
Sbjct: 1356 GTGLFKL 1362

[Close]

BLAST of MELO3C026853T1 vs. Swiss-Prot
Match: RPC1_BOVIN (DNA-directed RNA polymerase III subunit RPC1 OS=Bos taurus GN=POLR3A PE=2 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 4.0e-42
Identity = 85/127 (66.93%), Postives = 101/127 (79.53%), Query Frame = 1


Query: 1    MGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMT 60
            M T GV G  T SN+  EV++ LGIEAAR  II EI+YTM +HGMSID RH+MLL DLMT
Sbjct: 1236 MATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMT 1295

Query: 61   FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPL 120
            ++GEVLGITRFG+ KM +SVLMLASFEKTADHLF+A+  G+ D + GVSEC+IMGIPM +
Sbjct: 1296 YKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNI 1355

Query: 121  GTGMLKV 128
            GTG+ K+
Sbjct: 1356 GTGLFKL 1362

[Close]

BLAST of MELO3C026853T1 vs. Swiss-Prot
Match: RPC1_DICDI (DNA-directed RNA polymerase III subunit rpc1 OS=Dictyostelium discoideum GN=polr3a PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.7e-42
Identity = 83/130 (63.85%), Postives = 101/130 (77.69%), Query Frame = 1


Query: 1    MGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMT 60
            M T G+ G +T SNHI+E +  LGIE AR  I+ EI   M SHGMSIDIRH+MLL DLM+
Sbjct: 1306 MATPGIKGTHTTSNHIMECENTLGIETARNTIMSEIDMIMTSHGMSIDIRHVMLLADLMS 1365

Query: 61   FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPL 120
            F+GE+LGITRFGI KM +SVLMLASFEKT DHLF+A+V+ R D I GVSEC+IMG+ +PL
Sbjct: 1366 FKGEILGITRFGIAKMKESVLMLASFEKTTDHLFDAAVHHRQDDIVGVSECIIMGVVIPL 1425

Query: 121  GTGMLKVRQR 131
            GTG+ K+ ++
Sbjct: 1426 GTGLFKLLRK 1435

[Close]

BLAST of MELO3C026853T1 vs. TrEMBL
Match: A0A0A0LXJ4_CUCSA (DNA-directed RNA polymerase OS=Cucumis sativus GN=Csa_1G083760 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 9.4e-67
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMT 60
           MGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMT
Sbjct: 42  MGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMT 101

Query: 61  FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPL 120
           FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPL
Sbjct: 102 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPL 161

Query: 121 GTGMLKVRQR 131
           GTGMLKVRQR
Sbjct: 162 GTGMLKVRQR 171

[Close]

BLAST of MELO3C026853T1 vs. TrEMBL
Match: A0A067GCD6_CITSI (DNA-directed RNA polymerase subunit OS=Citrus sinensis GN=CISIN_1g000828mg PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 3.6e-58
Identity = 113/130 (86.92%), Postives = 121/130 (93.08%), Query Frame = 1


Query: 1    MGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMT 60
            MG EG+DGC TKSNHI EVQQ LGIEAAR CII+EI  TM++HGMSID RHMMLL DLMT
Sbjct: 1119 MGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMT 1178

Query: 61   FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPL 120
            FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDD+IEGVSEC+IMGIPMPL
Sbjct: 1179 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPL 1238

Query: 121  GTGMLKVRQR 131
            GTG+LK+RQR
Sbjct: 1239 GTGILKIRQR 1248

[Close]

BLAST of MELO3C026853T1 vs. TrEMBL
Match: V4SLI9_9ROSI (DNA-directed RNA polymerase subunit OS=Citrus clementina GN=CICLE_v10027681mg PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 3.6e-58
Identity = 113/130 (86.92%), Postives = 121/130 (93.08%), Query Frame = 1


Query: 1    MGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMT 60
            MG EG+DGC TKSNHI EVQQ LGIEAAR CII+EI  TM++HGMSID RHMMLL DLMT
Sbjct: 1251 MGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMT 1310

Query: 61   FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPL 120
            FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDD+IEGVSEC+IMGIPMPL
Sbjct: 1311 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPL 1370

Query: 121  GTGMLKVRQR 131
            GTG+LK+RQR
Sbjct: 1371 GTGILKIRQR 1380

[Close]

BLAST of MELO3C026853T1 vs. TrEMBL
Match: W9QSP3_9ROSA (DNA-directed RNA polymerase subunit OS=Morus notabilis GN=L484_007172 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.7e-58
Identity = 114/130 (87.69%), Postives = 123/130 (94.62%), Query Frame = 1


Query: 1    MGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMT 60
            MGTEGVDG NTK+NHIIEVQQ LGIEAAR CII+EI+YTM+SHGMSID RHMMLL D+MT
Sbjct: 1033 MGTEGVDGRNTKTNHIIEVQQTLGIEAARTCIIDEIEYTMKSHGMSIDTRHMMLLADVMT 1092

Query: 61   FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPL 120
             RGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGR+DKIEGVSEC+IMGIPM +
Sbjct: 1093 SRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGREDKIEGVSECIIMGIPMQI 1152

Query: 121  GTGMLKVRQR 131
            GTGM+KVRQR
Sbjct: 1153 GTGMIKVRQR 1162

[Close]

BLAST of MELO3C026853T1 vs. TrEMBL
Match: F6GTW0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g03730 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 6.1e-58
Identity = 117/130 (90.00%), Postives = 121/130 (93.08%), Query Frame = 1


Query: 1   MGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMT 60
           MGTEGV G  T SNHIIEVQQ LGIEAARKCII EI+YTM SHGMSIDIRHMMLL DLMT
Sbjct: 186 MGTEGVIGRETTSNHIIEVQQTLGIEAARKCIINEIQYTMASHGMSIDIRHMMLLADLMT 245

Query: 61  FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPL 120
           FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASV+GRDDKIEGVSEC+IMGIPM L
Sbjct: 246 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQL 305

Query: 121 GTGMLKVRQR 131
           GTG+LKVRQR
Sbjct: 306 GTGILKVRQR 315

[Close]

BLAST of MELO3C026853T1 vs. TAIR10
Match: AT5G60040.2 (AT5G60040.2 nuclear RNA polymerase C1)

HSP 1 Score: 182.6 bits (462), Expect = 1.6e-46
Identity = 91/130 (70.00%), Postives = 106/130 (81.54%), Query Frame = 1


Query: 1    MGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMT 60
            MGT G++G  T SN+++EV + LGIEAAR  II+EI   M +HGMSIDIRHMMLL D+MT
Sbjct: 1246 MGTPGINGRTTTSNNVVEVSKTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMMLLADVMT 1305

Query: 61   FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPL 120
            +RGEVLGI R GIQKMDKSVLM ASFE+T DHLF+A+ +G+ D IEGV+ECVIMGIPM L
Sbjct: 1306 YRGEVLGIQRTGIQKMDKSVLMQASFERTGDHLFSAAASGKVDNIEGVTECVIMGIPMKL 1365

Query: 121  GTGMLKVRQR 131
            GTG+LKV QR
Sbjct: 1366 GTGILKVLQR 1375

[Close]

BLAST of MELO3C026853T1 vs. TAIR10
Match: AT4G35800.1 (AT4G35800.1 RNA polymerase II large subunit)

HSP 1 Score: 104.0 bits (258), Expect = 7.4e-23
Identity = 50/120 (41.67%), Postives = 75/120 (62.50%), Query Frame = 1


Query: 4    EGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMTFRG 63
            E VD   T SNH+IE+ +VLGIEA R+ +++E++  +   G  ++ RH+ +L D MT+RG
Sbjct: 1341 EDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRG 1400

Query: 64   EVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPLGTG 123
             ++ ITR GI + D   LM  SFE+T D L +A+     D + GV+E +++G   P+GTG
Sbjct: 1401 HLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQLAPIGTG 1460

[Close]

BLAST of MELO3C026853T1 vs. TAIR10
Match: AT3G57660.1 (AT3G57660.1 nuclear RNA polymerase A1)

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-14
Identity = 41/118 (34.75%), Postives = 61/118 (51.69%), Query Frame = 1


Query: 13   SNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMTFRGEVLGITRFG 72
            SN I ++  + G+EAAR+ II EI +  +S+G+S+ IRH+ L+ D MTF G    ++R G
Sbjct: 1550 SNSIHDMLNIFGVEAARETIIREINHVFKSYGISVSIRHLNLIADYMTFSGGYRPMSRMG 1609

Query: 73   IQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPLGTGMLKVRQR 131
                  S     +FE     +  A+  G  D +E  S  + +G+P   GTG   + QR
Sbjct: 1610 GIAESTSPFCRMTFETATKFIVQAATYGEKDTLETPSARICLGLPALSGTGCFDLMQR 1667

[Close]

BLAST of MELO3C026853T1 vs. NCBI nr
Match: gi|449462093|ref|XP_004148776.1| (PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Cucumis sativus])

HSP 1 Score: 260.8 bits (665), Expect = 1.3e-66
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1    MGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMT 60
            MGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMT
Sbjct: 1255 MGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMT 1314

Query: 61   FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPL 120
            FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPL
Sbjct: 1315 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPL 1374

Query: 121  GTGMLKVRQR 131
            GTGMLKVRQR
Sbjct: 1375 GTGMLKVRQR 1384

[Close]

BLAST of MELO3C026853T1 vs. NCBI nr
Match: gi|700209630|gb|KGN64726.1| (DNA-directed RNA polymerase [Cucumis sativus])

HSP 1 Score: 260.8 bits (665), Expect = 1.3e-66
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1   MGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMT 60
           MGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMT
Sbjct: 42  MGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMT 101

Query: 61  FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPL 120
           FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPL
Sbjct: 102 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPL 161

Query: 121 GTGMLKVRQR 131
           GTGMLKVRQR
Sbjct: 162 GTGMLKVRQR 171

[Close]

BLAST of MELO3C026853T1 vs. NCBI nr
Match: gi|659130677|ref|XP_008465290.1| (PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit rpc1 [Cucumis melo])

HSP 1 Score: 260.8 bits (665), Expect = 1.3e-66
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1


Query: 1    MGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMT 60
            MGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMT
Sbjct: 1255 MGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMT 1314

Query: 61   FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPL 120
            FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPL
Sbjct: 1315 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPL 1374

Query: 121  GTGMLKVRQR 131
            GTGMLKVRQR
Sbjct: 1375 GTGMLKVRQR 1384

[Close]

BLAST of MELO3C026853T1 vs. NCBI nr
Match: gi|641854232|gb|KDO73040.1| (hypothetical protein CISIN_1g000828mg [Citrus sinensis])

HSP 1 Score: 232.3 bits (591), Expect = 5.1e-58
Identity = 113/130 (86.92%), Postives = 121/130 (93.08%), Query Frame = 1


Query: 1    MGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMT 60
            MG EG+DGC TKSNHI EVQQ LGIEAAR CII+EI  TM++HGMSID RHMMLL DLMT
Sbjct: 1119 MGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMT 1178

Query: 61   FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPL 120
            FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDD+IEGVSEC+IMGIPMPL
Sbjct: 1179 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPL 1238

Query: 121  GTGMLKVRQR 131
            GTG+LK+RQR
Sbjct: 1239 GTGILKIRQR 1248

[Close]

BLAST of MELO3C026853T1 vs. NCBI nr
Match: gi|567864104|ref|XP_006424701.1| (hypothetical protein CICLE_v10027681mg [Citrus clementina])

HSP 1 Score: 232.3 bits (591), Expect = 5.1e-58
Identity = 113/130 (86.92%), Postives = 121/130 (93.08%), Query Frame = 1


Query: 1    MGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMT 60
            MG EG+DGC TKSNHI EVQQ LGIEAAR CII+EI  TM++HGMSID RHMMLL DLMT
Sbjct: 1251 MGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMT 1310

Query: 61   FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPL 120
            FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDD+IEGVSEC+IMGIPMPL
Sbjct: 1311 FRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPL 1370

Query: 121  GTGMLKVRQR 131
            GTG+LK+RQR
Sbjct: 1371 GTGILKIRQR 1380

The following BLAST results are available for this feature:

BLAST of MELO3C026853T1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NRPC1_ARATH	2.9e-45	70.00	DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana GN=NRPC1 PE=2 ...	[more]
RPC1_CHICK	3.0e-42	66.93	DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus GN=POLR3A PE=2 SV=...	[more]
RPC1_HUMAN	4.0e-42	66.93	DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens GN=POLR3A PE=1 SV=2	[more]
RPC1_BOVIN	4.0e-42	66.93	DNA-directed RNA polymerase III subunit RPC1 OS=Bos taurus GN=POLR3A PE=2 SV=1	[more]
RPC1_DICDI	6.7e-42	63.85	DNA-directed RNA polymerase III subunit rpc1 OS=Dictyostelium discoideum GN=polr...	[more]

BLAST of MELO3C026853T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXJ4_CUCSA	9.4e-67	100.00	DNA-directed RNA polymerase OS=Cucumis sativus GN=Csa_1G083760 PE=4 SV=1	[more]
A0A067GCD6_CITSI	3.6e-58	86.92	DNA-directed RNA polymerase subunit OS=Citrus sinensis GN=CISIN_1g000828mg PE=3 ...	[more]
V4SLI9_9ROSI	3.6e-58	86.92	DNA-directed RNA polymerase subunit OS=Citrus clementina GN=CICLE_v10027681mg PE...	[more]
W9QSP3_9ROSA	4.7e-58	87.69	DNA-directed RNA polymerase subunit OS=Morus notabilis GN=L484_007172 PE=3 SV=1	[more]
F6GTW0_VITVI	6.1e-58	90.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g03730 PE=4 SV=...	[more]

BLAST of MELO3C026853T1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G60040.2	1.6e-46	70.00	nuclear RNA polymerase C1	[more]
AT4G35800.1	7.4e-23	41.67	RNA polymerase II large subunit	[more]
AT3G57660.1	1.3e-14	34.75	nuclear RNA polymerase A1	[more]

BLAST of MELO3C026853T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462093\|ref\|XP_004148776.1\|	1.3e-66	100.00	PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Cucumis sativus]	[more]
gi\|700209630\|gb\|KGN64726.1\|	1.3e-66	100.00	DNA-directed RNA polymerase [Cucumis sativus]	[more]
gi\|659130677\|ref\|XP_008465290.1\|	1.3e-66	100.00	PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit rpc1 [Cu...	[more]
gi\|641854232\|gb\|KDO73040.1\|	5.1e-58	86.92	hypothetical protein CISIN_1g000828mg [Citrus sinensis]	[more]
gi\|567864104\|ref\|XP_006424701.1\|	5.1e-58	86.92	hypothetical protein CICLE_v10027681mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR007081	RNA_pol_Rpb1_5

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0032549	ribonucleoside binding
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C026853	MELO3C026853	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C026853T1	MELO3C026853T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C026853T1.cds2	MELO3C026853T1.cds2	CDS
MELO3C026853T1.cds1	MELO3C026853T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007081	RNA polymerase Rpb1, domain 5	PFAM	PF04998	RNA_pol_Rpb1_5	coord: 5..80 score: 3.8
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 6..131 score: 2.0
None	No IPR available	PANTHER	PTHR19376:SF32	DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1	coord: 6..131 score: 2.0
None	No IPR available	unknown	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 2..128 score: 3.97