MELO3C026457T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C026457T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPutative pol protein
Locationchr10 : 22163074 .. 22163577 (-)
Sequence length504
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTCATCAATGTTAATATGGATGATCACATCCAAACTTCCAAGAGTCATGTAGATGAAGAAGATGGACTTTTCTGGGTCAACAAGTCTCAAGCTACTAGACCTACTATCTTTGAAAATTCATCCTTAACTAAAGAAACTTCGTCTATTCGGATCAGTAAGGACAACGTATTAGTTCTAGCAGCAGCCACCCCAGTTGGTCATCTTGAGAACAGCTCAAGCGAATGTTCAATATTTGATTATCAACAGACATTAGAGCATTCCTCTCAGAATGATCATCAAGATCTCATCAACTCTACTAAGTCCTCTATGCAAAAATTGATGCCCTCCACTCATGTAGCTAAGAATCATCCTCTTAATGCTATTATTGGGGATGTCAGAAGTGGCATTACCACGAGAAAGAAGAAACAAAGATGCTATGTGAAAATGGTTGCAAATGTGTGCTATACCTCCACCATGGAACTTGCTACTATCACTGATGCTCTCACAGATGATCATTGA

mRNA sequence

ATGGAATTCATCAATGTTAATATGGATGATCACATCCAAACTTCCAAGAGTCATGTAGATGAAGAAGATGGACTTTTCTGGGTCAACAAGTCTCAAGCTACTAGACCTACTATCTTTGAAAATTCATCCTTAACTAAAGAAACTTCGTCTATTCGGATCAGTAAGGACAACGTATTAGTTCTAGCAGCAGCCACCCCAGTTGGTCATCTTGAGAACAGCTCAAGCGAATGTTCAATATTTGATTATCAACAGACATTAGAGCATTCCTCTCAGAATGATCATCAAGATCTCATCAACTCTACTAAGTCCTCTATGCAAAAATTGATGCCCTCCACTCATGTAGCTAAGAATCATCCTCTTAATGCTATTATTGGGGATGTCAGAAGTGGCATTACCACGAGAAAGAAGAAACAAAGATGCTATGTGAAAATGGTTGCAAATGTGTGCTATACCTCCACCATGGAACTTGCTACTATCACTGATGCTCTCACAGATGATCATTGA

Coding sequence (CDS)

ATGGAATTCATCAATGTTAATATGGATGATCACATCCAAACTTCCAAGAGTCATGTAGATGAAGAAGATGGACTTTTCTGGGTCAACAAGTCTCAAGCTACTAGACCTACTATCTTTGAAAATTCATCCTTAACTAAAGAAACTTCGTCTATTCGGATCAGTAAGGACAACGTATTAGTTCTAGCAGCAGCCACCCCAGTTGGTCATCTTGAGAACAGCTCAAGCGAATGTTCAATATTTGATTATCAACAGACATTAGAGCATTCCTCTCAGAATGATCATCAAGATCTCATCAACTCTACTAAGTCCTCTATGCAAAAATTGATGCCCTCCACTCATGTAGCTAAGAATCATCCTCTTAATGCTATTATTGGGGATGTCAGAAGTGGCATTACCACGAGAAAGAAGAAACAAAGATGCTATGTGAAAATGGTTGCAAATGTGTGCTATACCTCCACCATGGAACTTGCTACTATCACTGATGCTCTCACAGATGATCATTGA

Protein sequence

MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLTKETSSIRISKDNVLVLAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLINSTKSSMQKLMPSTHVAKNHPLNAIIGDVRSGITTRKKKQRCYVKMVANVCYTSTMELATITDALTDDH*
Homology
[Close]
BLAST of MELO3C026457T1 vs. NCBI nr
Match: gi|659118728|ref|XP_008459272.1| (PREDICTED: uncharacterized protein LOC103498447 [Cucumis melo])

HSP 1 Score: 104.4 bits (259), Expect = 2.0e-19
Identity = 62/167 (37.13%), Postives = 95/167 (56.89%), Query Frame = 1 

Query: 1   MEFINVNMDDHIQTSKSHVDEEDGLFWVNKSQATRPTIFENSSLTKETSSIRISKDNVLV 60
           ME INV +DD  +    ++D+ED +FW   S + +PT  E  S      + RI++   L 
Sbjct: 103 MESINVIIDDLGKEPNINLDDEDEVFW--NSLSHKPTEGELDS------TARINETTYLP 162

Query: 61  LAAATPVGHLENSSSECSIFDYQQTLEHSSQNDHQDLINSTKSSMQKLMPSTHVAKNHPL 120
               +    +   S+     D ++ L  + Q+  +    +T SS   L+P TH+AKNHP 
Sbjct: 163 SHLGSRRSDMSTPSTSTIHTDTREALVSARQHTLEQTAGATDSSKCNLIPPTHIAKNHPS 222

Query: 121 NAIIGDVRSGITTRKKKQRCYVKMVANVCYTSTMELATITDALTDDH 168
           + I GD+ SGI TRKK+++ Y KMVANVCYTS++E  T++  L+D+H
Sbjct: 223 SFINGDIHSGIITRKKERKDYAKMVANVCYTSSLEPTTVSAVLSDEH 261

[Close]
BLAST of MELO3C026457T1 vs. NCBI nr
Match: gi|659125416|ref|XP_008462676.1| (PREDICTED: uncharacterized protein LOC103500980 [Cucumis melo])

HSP 1 Score: 102.4 bits (254), Expect = 7.6e-19
Identity = 64/130 (49.23%), Postives = 81/130 (62.31%), Query Frame = 1 

Query: 40  ENSSLTKETS-SIRISKDNVLVLAAA-TPVGHLENSSSECSIFDYQQTLEHSSQNDHQDL 99
           E++SLT+ET+ S   SK N++ ++   T V H E    E  +   Q T E +        
Sbjct: 289 ESTSLTRETTYSPPHSKTNIIDMSTPPTSVNHSEICEGEAVVSASQHTPEWT-------- 348

Query: 100 INSTKSSMQKLMPSTHVAKNHPLNAIIGDVRSGITTRKKKQRCYVKMVANVCYTSTMELA 159
           I+ST S   KLMP  H+AKNHP   IIGDV SGI TRKK++R Y KMVANVCYTS++E  
Sbjct: 349 IDSTDSLKHKLMPPMHIAKNHPSIFIIGDVHSGIITRKKERRDYAKMVANVCYTSSLEPT 408

Query: 160 TITDALTDDH 168
           TIT ALT +H
Sbjct: 409 TITVALTYEH 410

[Close]
BLAST of MELO3C026457T1 vs. NCBI nr
Match: gi|659124383|ref|XP_008462132.1| (PREDICTED: uncharacterized protein LOC103500561 [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 1.0e-07
Identity = 28/60 (46.67%), Postives = 43/60 (71.67%), Query Frame = 1 

Query: 108 LMPSTHVAKNHPLNAIIGDVRSGITTRKKKQRCYVKMVANVCYTSTMELATITDALTDDH 167
           L PS HV KNHP +++IGD  +GITTR+K++  Y KM+A++CY S +E  +  + L D++
Sbjct: 66  LFPSAHVKKNHPSSSMIGDPSAGITTRRKEKVDYTKMIADLCYVSAIEPTSFENTLKDEY 125

[Close]
BLAST of MELO3C026457T1 vs. NCBI nr
Match: gi|659116516|ref|XP_008458108.1| (PREDICTED: uncharacterized protein LOC103497638 [Cucumis melo])

HSP 1 Score: 63.2 bits (152), Expect = 5.1e-07
Identity = 33/87 (37.93%), Postives = 54/87 (62.07%), Query Frame = 1 

Query: 81  DYQQTLEHSSQNDHQDLINSTKSSMQKLMPSTHVAKNHPLNAIIGDVRSGITTRKKKQRC 140
           D Q     ++ N   ++IN+       L+PS HV KNH  ++IIGD  +GITT+ K++  
Sbjct: 595 DSQPDSAKTNSNITDEVINNETV----LVPSAHVKKNHLSSSIIGDPSAGITTKWKEKVD 654

Query: 141 YVKMVANVCYTSTMELATITDALTDDH 168
           Y KM+A++CY S +E  ++ +AL D++
Sbjct: 655 YTKMIADLCYVSAIEPTSVENALKDEY 677

The following BLAST results are available for this feature:
BLAST of MELO3C026457T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659118728|ref|XP_008459272.1|2.0e-1937.13PREDICTED: uncharacterized protein LOC103498447 [Cucumis melo][more]
gi|659125416|ref|XP_008462676.1|7.6e-1949.23PREDICTED: uncharacterized protein LOC103500980 [Cucumis melo][more]
gi|659124383|ref|XP_008462132.1|1.0e-0746.67PREDICTED: uncharacterized protein LOC103500561 [Cucumis melo][more]
gi|659116516|ref|XP_008458108.1|5.1e-0737.93PREDICTED: uncharacterized protein LOC103497638 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C026457MELO3C026457gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C026457T1MELO3C026457T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C026457T1.cds1MELO3C026457T1.cds1CDS