MELO3C026129T1 (mRNA) Melon (DHL92) v3.5.1

NameMELO3C026129T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionGag polyprotein
Locationchr3 : 18306385 .. 18306639 (+)
Sequence length255
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAAGAGGAAGGAAATGGAAGCAAATGTTGCTACCACAGAGAAACAATTAGTAGGAGGATCGTCCTCTAAGACTATAGTTGGACCTTCACTTATGAAGAAGAAGAGAAAGGGAAAGACTCCTAAGAATAATAAGGGAAAGAAAGTTGCTAAAGGTAAATGTTACCACTGCAACGAGGATGGACATTGGTTAAGAAATTGTCCAAAGTACCTTGCTGAGAAGAAAGCTGAGAAGGAAGCACAAAGAAACTAG

mRNA sequence

ATGAGTAAGAGGAAGGAAATGGAAGCAAATGTTGCTACCACAGAGAAACAATTAGTAGGAGGATCGTCCTCTAAGACTATAGTTGGACCTTCACTTATGAAGAAGAAGAGAAAGGGAAAGACTCCTAAGAATAATAAGGGAAAGAAAGTTGCTAAAGGTAAATGTTACCACTGCAACGAGGATGGACATTGGTTAAGAAATTGTCCAAAGTACCTTGCTGAGAAGAAAGCTGAGAAGGAAGCACAAAGAAACTAG

Coding sequence (CDS)

ATGAGTAAGAGGAAGGAAATGGAAGCAAATGTTGCTACCACAGAGAAACAATTAGTAGGAGGATCGTCCTCTAAGACTATAGTTGGACCTTCACTTATGAAGAAGAAGAGAAAGGGAAAGACTCCTAAGAATAATAAGGGAAAGAAAGTTGCTAAAGGTAAATGTTACCACTGCAACGAGGATGGACATTGGTTAAGAAATTGTCCAAAGTACCTTGCTGAGAAGAAAGCTGAGAAGGAAGCACAAAGAAACTAG

Protein sequence

MSKRKEMEANVATTEKQLVGGSSSKTIVGPSLMKKKRKGKTPKNNKGKKVAKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQRN*
BLAST of MELO3C026129T1 vs. TrEMBL
Match: E2GK51_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.9e-23
Identity = 57/85 (67.06%), Postives = 66/85 (77.65%), Query Frame = 1

Query: 1   MSKRKEMEANVATTEKQLVGGSSSKTIVGPSL--MKKKRKGKTPKNNKGKKVA-KGKCYH 60
           +SK KE+EANVA T+++ + GSSSK  VGPS   MKKK KGK P  +K KK A KGKC+H
Sbjct: 197 LSKGKEVEANVAVTKRKFIRGSSSKNKVGPSKAQMKKKGKGKAPNTSKVKKNADKGKCFH 256

Query: 61  CNEDGHWLRNCPKYLAEKKAEKEAQ 83
           CN+DGHW RNCPKYLAEKKAEK  Q
Sbjct: 257 CNQDGHWKRNCPKYLAEKKAEKATQ 281

BLAST of MELO3C026129T1 vs. TrEMBL
Match: A0A165U314_9ROSI (Gag/pol protein OS=Momordica dioica PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-13
Identity = 46/85 (54.12%), Postives = 54/85 (63.53%), Query Frame = 1

Query: 5   KEMEANVAT--TEKQLVGGS-----SSKTIVGPSLMKKKRKGKTPKNNKGKKVA---KGK 64
           KE+EAN+    T K+          SSK  VGP  +K K+KGK     KGKK +   KGK
Sbjct: 200 KEVEANMVNKVTAKRFKRNDKGKKGSSKNKVGPDEIKMKKKGKGKAAKKGKKGSAADKGK 259

Query: 65  CYHCNEDGHWLRNCPKYLAEKKAEK 80
           C+HCNE GHW RNCPKYLA+KKAEK
Sbjct: 260 CFHCNEMGHWKRNCPKYLADKKAEK 284

BLAST of MELO3C026129T1 vs. TrEMBL
Match: W9SUE5_9ROSA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Morus notabilis GN=L484_000602 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.3e-09
Identity = 37/82 (45.12%), Postives = 46/82 (56.10%), Query Frame = 1

Query: 2   SKRKEMEANVATTEKQLVGGSSSKTIVGPSLMKKKRKGKTPKNNKGK---KVAKGKCYHC 61
           +KR+  EANV  T      GSS K         K++KGK  +  K K   +  KGKC+HC
Sbjct: 120 NKRRGREANVVVT------GSSGKNKRNNQNQGKRKKGKNKRPKKAKGPIQKPKGKCFHC 179

Query: 62  NEDGHWLRNCPKYLAEKKAEKE 81
           N +GHW RNC KYL E K +KE
Sbjct: 180 NGEGHWKRNCHKYLEELKKKKE 195

BLAST of MELO3C026129T1 vs. TrEMBL
Match: W9R1A7_9ROSA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Morus notabilis GN=L484_009340 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.1e-08
Identity = 38/82 (46.34%), Postives = 46/82 (56.10%), Query Frame = 1

Query: 2   SKRKEMEANVATTEKQLVGGSSSKTIVGPSLMKKKRKGKT--PKNNKGK-KVAKGKCYHC 61
           +KR+  EANV      +V G S K+        K  KGK   PK  KG  +  KGKC+HC
Sbjct: 109 NKRRGGEANV------VVAGGSGKSKRKDRNQGKGEKGKNRKPKKTKGPIQKPKGKCFHC 168

Query: 62  NEDGHWLRNCPKYLAEKKAEKE 81
           N +GHW RNC KYL E K +KE
Sbjct: 169 NGEGHWKRNCHKYLEELKKKKE 184

BLAST of MELO3C026129T1 vs. TrEMBL
Match: W9RV03_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020791 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.8e-07
Identity = 32/67 (47.76%), Postives = 42/67 (62.69%), Query Frame = 1

Query: 22  SSSKTIVGPSLMK-------KKRKGKTPKNNKGK-KVAKGKCYHCNEDGHWLRNCPKYLA 81
           S++K   G +++K       KK K K PK  KG+ +  KGKC+HCN +GHW RNC KYL 
Sbjct: 118 STNKRRGGAAMLKNQNQGKWKKGKNKRPKKAKGRIQKPKGKCFHCNGEGHWKRNCHKYLE 177

BLAST of MELO3C026129T1 vs. NCBI nr
Match: gi|299474487|gb|ADJ18449.1| (gag/pol protein [Bryonia dioica])

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-22
Identity = 57/85 (67.06%), Postives = 66/85 (77.65%), Query Frame = 1

Query: 1   MSKRKEMEANVATTEKQLVGGSSSKTIVGPSL--MKKKRKGKTPKNNKGKKVA-KGKCYH 60
           +SK KE+EANVA T+++ + GSSSK  VGPS   MKKK KGK P  +K KK A KGKC+H
Sbjct: 197 LSKGKEVEANVAVTKRKFIRGSSSKNKVGPSKAQMKKKGKGKAPNTSKVKKNADKGKCFH 256

Query: 61  CNEDGHWLRNCPKYLAEKKAEKEAQ 83
           CN+DGHW RNCPKYLAEKKAEK  Q
Sbjct: 257 CNQDGHWKRNCPKYLAEKKAEKATQ 281

BLAST of MELO3C026129T1 vs. NCBI nr
Match: gi|1019597807|gb|AMY96445.1| (gag/pol protein [Momordica dioica])

HSP 1 Score: 83.2 bits (204), Expect = 2.4e-13
Identity = 46/85 (54.12%), Postives = 54/85 (63.53%), Query Frame = 1

Query: 5   KEMEANVAT--TEKQLVGGS-----SSKTIVGPSLMKKKRKGKTPKNNKGKKVA---KGK 64
           KE+EAN+    T K+          SSK  VGP  +K K+KGK     KGKK +   KGK
Sbjct: 200 KEVEANMVNKVTAKRFKRNDKGKKGSSKNKVGPDEIKMKKKGKGKAAKKGKKGSAADKGK 259

Query: 65  CYHCNEDGHWLRNCPKYLAEKKAEK 80
           C+HCNE GHW RNCPKYLA+KKAEK
Sbjct: 260 CFHCNEMGHWKRNCPKYLADKKAEK 284

BLAST of MELO3C026129T1 vs. NCBI nr
Match: gi|659113933|ref|XP_008456826.1| (PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 4.6e-12
Identity = 44/92 (47.83%), Postives = 57/92 (61.96%), Query Frame = 1

Query: 3   KRKEMEANVATTEKQLVGGSSSKTIVGPSLM-----KKKRKGKTPKNN-------KGKKV 62
           K ++ EANVAT+ ++   GS+S T   PS       KKK+ G+  K N       K  KV
Sbjct: 199 KGQKGEANVATSTRKFHRGSTSGTKYMPSSSGNKKWKKKKGGQGNKANLAATKTSKKAKV 258

Query: 63  AKGKCYHCNEDGHWLRNCPKYLAEKKAEKEAQ 83
           AKG C+HCN++GHW RNCPKYLAEKK  K+ +
Sbjct: 259 AKGICFHCNQEGHWKRNCPKYLAEKKKAKQGK 290

BLAST of MELO3C026129T1 vs. NCBI nr
Match: gi|659113937|ref|XP_008456829.1| (PREDICTED: uncharacterized protein LOC103496667 [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 2.3e-11
Identity = 43/90 (47.78%), Postives = 55/90 (61.11%), Query Frame = 1

Query: 3   KRKEMEANVATTEKQLVGGSSSKTIVGPSLM-----KKKRKGKTPKNN-------KGKKV 62
           K ++ EANVAT+ ++   GS+S T   PS       KKK+ G+  K N       K  K 
Sbjct: 99  KGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAKA 158

Query: 63  AKGKCYHCNEDGHWLRNCPKYLAEKKAEKE 81
           AKG C+HCN++GHW RNCPKYLAEKK  K+
Sbjct: 159 AKGICFHCNQEGHWKRNCPKYLAEKKKAKQ 188

BLAST of MELO3C026129T1 vs. NCBI nr
Match: gi|703153188|ref|XP_010110616.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus notabilis])

HSP 1 Score: 68.6 bits (166), Expect = 6.2e-09
Identity = 37/82 (45.12%), Postives = 46/82 (56.10%), Query Frame = 1

Query: 2   SKRKEMEANVATTEKQLVGGSSSKTIVGPSLMKKKRKGKTPKNNKGK---KVAKGKCYHC 61
           +KR+  EANV  T      GSS K         K++KGK  +  K K   +  KGKC+HC
Sbjct: 120 NKRRGREANVVVT------GSSGKNKRNNQNQGKRKKGKNKRPKKAKGPIQKPKGKCFHC 179

Query: 62  NEDGHWLRNCPKYLAEKKAEKE 81
           N +GHW RNC KYL E K +KE
Sbjct: 180 NGEGHWKRNCHKYLEELKKKKE 195

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E2GK51_BRYDI8.9e-2367.06Gag/pol protein (Fragment) OS=Bryonia dioica PE=4 SV=1[more]
A0A165U314_9ROSI1.7e-1354.12Gag/pol protein OS=Momordica dioica PE=4 SV=1[more]
W9SUE5_9ROSA4.3e-0945.12Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Morus notabilis G... [more]
W9R1A7_9ROSA8.1e-0846.34Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Morus notabilis G... [more]
W9RV03_9ROSA1.8e-0747.76Uncharacterized protein OS=Morus notabilis GN=L484_020791 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|299474487|gb|ADJ18449.1|1.3e-2267.06gag/pol protein [Bryonia dioica][more]
gi|1019597807|gb|AMY96445.1|2.4e-1354.12gag/pol protein [Momordica dioica][more]
gi|659113933|ref|XP_008456826.1|4.6e-1247.83PREDICTED: uncharacterized protein LOC103496664 [Cucumis melo][more]
gi|659113937|ref|XP_008456829.1|2.3e-1147.78PREDICTED: uncharacterized protein LOC103496667 [Cucumis melo][more]
gi|703153188|ref|XP_010110616.1|6.2e-0945.12Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus notabilis][more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C026129MELO3C026129gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C026129T1MELO3C026129T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C026129T1.cds1MELO3C026129T1.cds1CDS


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeGENE3DG3DSA:4.10.60.10coord: 45..71
score: 7.
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 53..70
score: 3.
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 54..70
score: 0.
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 54..70
score: 9
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 35..73
score: 1.02