MELO3C025831T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025831T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Serine/threonine-protein kinase UL13 homolog
Location	chr4 : 17859883 .. 17860584 (+)
Sequence length	702

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCGCCTCTTGGCTGGCAACGGCCACCAAATCAGCGGCAATCGCCGCAAAGCAATCAAAATAATAGTCCACAGAGACCTCCTCAAACAATAGCTTCCTCCTCAGAAACAATACCTTCCAAGGGAAAACCCTCAACTCAATCATCTGCACCGTCACCTATGAGTGCAGAAAATTACACCATGGATTTACAATTTGAACAAGTATCCAGGCGACGTCAAGGTTTTGCTCAAAGAACATTGACTATTCAATCAGACTCTTCGAGTCTTCCCCCAATACCTTCAACCGCATTGCTGCGTCCCTCTGGGCCAACAACTCCAAATAAGCGTGCTGCTTCCCCGACCGCTTCTTCCTCAAGCTCTGCAATTCCGAGGAATCCTTCCTCGTATTCTCAAATCGTTAGGCCAAAAGTATTCCAGCCTAGACCTCCAATTAATGGTTATTTCACCAAAACCACGATGGTTGATTTAACCATAGAACCAGAATTCGATGGACCCTCCGTCTACGAAGTCTATAATCAAATATTTCCTCACGAGTTTAACTTCTTACCGGAGGATCTTGCAAAGACTAGGACCTTCTACAAGTACATTTTAGTTGACTCAAAATCAGCTGAAATTACTCACGTCCCAGACAAAAATGATCCCTCTAAGATCATTTATTCAAAGTTGAGGATTTTTCGTGTTCTCACTCAATCTTACTAG

mRNA sequence

ATGGAACCGCCTCTTGGCTGGCAACGGCCACCAAATCAGCGGCAATCGCCGCAAAGCAATCAAAATAATAGTCCACAGAGACCTCCTCAAACAATAGCTTCCTCCTCAGAAACAATACCTTCCAAGGGAAAACCCTCAACTCAATCATCTGCACCGTCACCTATGAGTGCAGAAAATTACACCATGGATTTACAATTTGAACAAGTATCCAGGCGACGTCAAGGTTTTGCTCAAAGAACATTGACTATTCAATCAGACTCTTCGAGTCTTCCCCCAATACCTTCAACCGCATTGCTGCGTCCCTCTGGGCCAACAACTCCAAATAAGCGTGCTGCTTCCCCGACCGCTTCTTCCTCAAGCTCTGCAATTCCGAGGAATCCTTCCTCGTATTCTCAAATCGTTAGGCCAAAAGTATTCCAGCCTAGACCTCCAATTAATGGTTATTTCACCAAAACCACGATGGTTGATTTAACCATAGAACCAGAATTCGATGGACCCTCCGTCTACGAAGTCTATAATCAAATATTTCCTCACGAGTTTAACTTCTTACCGGAGGATCTTGCAAAGACTAGGACCTTCTACAAGTACATTTTAGTTGACTCAAAATCAGCTGAAATTACTCACGTCCCAGACAAAAATGATCCCTCTAAGATCATTTATTCAAAGTTGAGGATTTTTCGTGTTCTCACTCAATCTTACTAG

Coding sequence (CDS)

ATGGAACCGCCTCTTGGCTGGCAACGGCCACCAAATCAGCGGCAATCGCCGCAAAGCAATCAAAATAATAGTCCACAGAGACCTCCTCAAACAATAGCTTCCTCCTCAGAAACAATACCTTCCAAGGGAAAACCCTCAACTCAATCATCTGCACCGTCACCTATGAGTGCAGAAAATTACACCATGGATTTACAATTTGAACAAGTATCCAGGCGACGTCAAGGTTTTGCTCAAAGAACATTGACTATTCAATCAGACTCTTCGAGTCTTCCCCCAATACCTTCAACCGCATTGCTGCGTCCCTCTGGGCCAACAACTCCAAATAAGCGTGCTGCTTCCCCGACCGCTTCTTCCTCAAGCTCTGCAATTCCGAGGAATCCTTCCTCGTATTCTCAAATCGTTAGGCCAAAAGTATTCCAGCCTAGACCTCCAATTAATGGTTATTTCACCAAAACCACGATGGTTGATTTAACCATAGAACCAGAATTCGATGGACCCTCCGTCTACGAAGTCTATAATCAAATATTTCCTCACGAGTTTAACTTCTTACCGGAGGATCTTGCAAAGACTAGGACCTTCTACAAGTACATTTTAGTTGACTCAAAATCAGCTGAAATTACTCACGTCCCAGACAAAAATGATCCCTCTAAGATCATTTATTCAAAGTTGAGGATTTTTCGTGTTCTCACTCAATCTTACTAG

Protein sequence

MEPPLGWQRPPNQRQSPQSNQNNSPQRPPQTIASSSETIPSKGKPSTQSSAPSPMSAENYTMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTALLRPSGPTTPNKRAASPTASSSSSAIPRNPSSYSQIVRPKVFQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTQSY*

Homology

[Close]

BLAST of MELO3C025831T1 vs. TrEMBL
Match: A0A0A0LWK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G385050 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.0e-31
Identity = 70/80 (87.50%), Postives = 75/80 (93.75%), Query Frame = 1


Query: 154 MVDLTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYILVDSKSAEITHVPDKN 213
           MVDLTIEPEFDGPSV EV  Q+FPH FNFLPEDL+KTRTFY++ILVDSKSAEITHVPDKN
Sbjct: 1   MVDLTIEPEFDGPSVPEVCKQVFPHGFNFLPEDLSKTRTFYEFILVDSKSAEITHVPDKN 60

Query: 214 DPSKIIYSKLRIFRVLTQSY 234
           DPSKIIYSKLRIF+VLT SY
Sbjct: 61  DPSKIIYSKLRIFQVLTPSY 80

[Close]

BLAST of MELO3C025831T1 vs. TrEMBL
Match: A0A0A0LUE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G434180 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.5e-30
Identity = 68/80 (85.00%), Postives = 73/80 (91.25%), Query Frame = 1


Query: 154 MVDLTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYILVDSKSAEITHVPDKN 213
           MVDLTIEPEFD PSV+E+  QIFPH FNFLPEDLAKT+TFY++ILVDSKSAEITHVP KN
Sbjct: 1   MVDLTIEPEFDRPSVFELCKQIFPHGFNFLPEDLAKTKTFYEFILVDSKSAEITHVPYKN 60

Query: 214 DPSKIIYSKLRIFRVLTQSY 234
           DP KIIYSKLRIFRVLT SY
Sbjct: 61  DPLKIIYSKLRIFRVLTPSY 80

[Close]

BLAST of MELO3C025831T1 vs. TrEMBL
Match: E5GCE6_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.1e-21
Identity = 71/155 (45.81%), Postives = 96/155 (61.94%), Query Frame = 1


Query: 41  SKG-KPSTQS-SAPSPMSAENYTMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTAL 100
           SKG +PS+ S S PSPMSA  YTMDL F  V+R R   +   +   ++SS+ PP PS  L
Sbjct: 17  SKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIGSPTESST-PPRPSVNL 76

Query: 101 LRPSGPTTPNKRAASPTASSSSSAIPRNPSSYSQIVR-PKVFQPRPPINGYFTKTTMV-D 160
           +RPSG     +  ASP+++  SS     P++YSQ V   K F PRP I  YF K+ +V D
Sbjct: 77  IRPSGGVIQMRPPASPSSNRESST---PPTTYSQAVTLDKRFVPRPEIKSYFQKSIVVYD 136

Query: 161 LTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTR 192
             IEPE+   ++ E+ ++IFP +FNFLPEDL K +
Sbjct: 137 PIIEPEYQSLTLEEMVSKIFPKDFNFLPEDLKKKK 167

[Close]

BLAST of MELO3C025831T1 vs. TrEMBL
Match: F6H9U7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0085g00640 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.2e-14
Identity = 66/195 (33.85%), Postives = 94/195 (48.21%), Query Frame = 1


Query: 48  QSSAPSPMSAENYTMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPI-PSTALLRPS---- 107
           Q  + S  +  +Y M   F  VS       Q + + Q  S   PP+ PS + ++ S    
Sbjct: 8   QLPSSSKKTKASYAMISNFSNVSPTFP--LQTSNSFQVLSPDFPPLQPSKSFIQASKSNP 67

Query: 108 ------GPTTPNKRAASPTASSSSSAIPRNPSSYSQIVR-PKVFQPRPPINGYFTKTTMV 167
                 G ++P+  +  P+ S S S  P   SSYSQ V+ PK               T+ 
Sbjct: 68  KNILIQGHSSPSTISTLPSPSQSPSQSPSPSSSYSQYVKKPK---------------TLE 127

Query: 168 DLTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYILVDSKSAEITHVPDKNDP 227
              IEPEF+   + ++   IFP   NF   D  KTR FY++IL D+ S EITH  DKN+P
Sbjct: 128 IAFIEPEFNFEEIPKILPYIFPPGVNFNSNDPLKTRQFYEFILADTDSVEITHNTDKNNP 185

Query: 228 SKIIYSKLRIFRVLT 231
            +I +SK +I RV+T
Sbjct: 188 QRIAFSKCQILRVMT 185

[Close]

BLAST of MELO3C025831T1 vs. TrEMBL
Match: F6GVI8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0116g01320 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.6e-13
Identity = 66/191 (34.55%), Postives = 95/191 (49.74%), Query Frame = 1


Query: 48  QSSAPSPMSAENYTMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPI-PSTALLRPSGPTT 107
           Q  + S  +  +Y M   F  V  R     Q + + Q  S   PP+ PS + ++ S  T 
Sbjct: 8   QLPSSSKKTKASYAMISNFSNV--RPTFPLQTSNSFQVLSPDFPPLQPSKSFIQASKSTP 67

Query: 108 PN---KRAASPTASSSSSAIPRNPS---SYSQIVR-PKVFQPRPPINGYFTKTTMVDLTI 167
            N   ++ +SP   S+  +  ++PS   SYSQ V+ PK               T+    I
Sbjct: 68  KNIVVQKQSSPNTISTLPSPSQSPSPSYSYSQYVKKPK---------------TLEIAFI 127

Query: 168 EPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYILVDSKSAEITHVPDKNDPSKII 227
           EPEF    + ++   IFP   NF   D  KTR FY++ILVD+ S EITH  DKN+P +I 
Sbjct: 128 EPEFIFEEIPKILPYIFPQGVNFNSNDPLKTRQFYEFILVDTDSVEITHNTDKNNPQRIA 181

Query: 228 YSKLRIFRVLT 231
           +SK +I RV+T
Sbjct: 188 FSKCQILRVMT 181

[Close]

BLAST of MELO3C025831T1 vs. NCBI nr
Match: gi|700210273|gb|KGN65369.1| (hypothetical protein Csa_1G385050 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 1.4e-31
Identity = 70/80 (87.50%), Postives = 75/80 (93.75%), Query Frame = 1


Query: 154 MVDLTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYILVDSKSAEITHVPDKN 213
           MVDLTIEPEFDGPSV EV  Q+FPH FNFLPEDL+KTRTFY++ILVDSKSAEITHVPDKN
Sbjct: 1   MVDLTIEPEFDGPSVPEVCKQVFPHGFNFLPEDLSKTRTFYEFILVDSKSAEITHVPDKN 60

Query: 214 DPSKIIYSKLRIFRVLTQSY 234
           DPSKIIYSKLRIF+VLT SY
Sbjct: 61  DPSKIIYSKLRIFQVLTPSY 80

[Close]

BLAST of MELO3C025831T1 vs. NCBI nr
Match: gi|700210424|gb|KGN65520.1| (hypothetical protein Csa_1G434180 [Cucumis sativus])

HSP 1 Score: 139.4 bits (350), Expect = 7.9e-30
Identity = 68/80 (85.00%), Postives = 73/80 (91.25%), Query Frame = 1


Query: 154 MVDLTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYILVDSKSAEITHVPDKN 213
           MVDLTIEPEFD PSV+E+  QIFPH FNFLPEDLAKT+TFY++ILVDSKSAEITHVP KN
Sbjct: 1   MVDLTIEPEFDRPSVFELCKQIFPHGFNFLPEDLAKTKTFYEFILVDSKSAEITHVPYKN 60

Query: 214 DPSKIIYSKLRIFRVLTQSY 234
           DP KIIYSKLRIFRVLT SY
Sbjct: 61  DPLKIIYSKLRIFRVLTPSY 80

[Close]

BLAST of MELO3C025831T1 vs. NCBI nr
Match: gi|307136323|gb|ADN34145.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 109.4 bits (272), Expect = 8.7e-21
Identity = 71/155 (45.81%), Postives = 96/155 (61.94%), Query Frame = 1


Query: 41  SKG-KPSTQS-SAPSPMSAENYTMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPIPSTAL 100
           SKG +PS+ S S PSPMSA  YTMDL F  V+R R   +   +   ++SS+ PP PS  L
Sbjct: 17  SKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIGSPTESST-PPRPSVNL 76

Query: 101 LRPSGPTTPNKRAASPTASSSSSAIPRNPSSYSQIVR-PKVFQPRPPINGYFTKTTMV-D 160
           +RPSG     +  ASP+++  SS     P++YSQ V   K F PRP I  YF K+ +V D
Sbjct: 77  IRPSGGVIQMRPPASPSSNRESST---PPTTYSQAVTLDKRFVPRPEIKSYFQKSIVVYD 136

Query: 161 LTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTR 192
             IEPE+   ++ E+ ++IFP +FNFLPEDL K +
Sbjct: 137 PIIEPEYQSLTLEEMVSKIFPKDFNFLPEDLKKKK 167

[Close]

BLAST of MELO3C025831T1 vs. NCBI nr
Match: gi|147767380|emb|CAN66723.1| (hypothetical protein VITISV_022330 [Vitis vinifera])

HSP 1 Score: 83.2 bits (204), Expect = 6.7e-13
Identity = 66/195 (33.85%), Postives = 96/195 (49.23%), Query Frame = 1


Query: 48  QSSAPSPMSAENYTMDLQFEQVSRRRQGFAQRTLTIQSDSSSLPPI-PSTALLRPSGPTT 107
           Q  + S  +  +Y M   F  V  R     Q + + Q  S   PP+ PS + ++ S  T 
Sbjct: 8   QLPSSSKKTKASYAMISNFSNV--RSTFPLQTSNSFQVLSPDFPPLQPSKSFIQASKSTP 67

Query: 108 PN---KRAASPTASSSSSAIPRNPS-------SYSQIVR-PKVFQPRPPINGYFTKTTMV 167
            N   +R +SP   S+  +  ++PS       SYSQ V+ PK               T+ 
Sbjct: 68  KNIVVQRQSSPNTISTLPSPSQSPSQSHSPSFSYSQYVKKPK---------------TLE 127

Query: 168 DLTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYILVDSKSAEITHVPDKNDP 227
              IEPEF+   + ++   IFP   NF   D  KTR FY++ILVD+ S EITH  DKN+P
Sbjct: 128 IAFIEPEFNFEEIPKILLYIFPQGVNFNSNDPLKTRQFYEFILVDTDSVEITHNTDKNNP 185

Query: 228 SKIIYSKLRIFRVLT 231
            +I +SK +I +V+T
Sbjct: 188 HRIAFSKCQILKVMT 185

[Close]

BLAST of MELO3C025831T1 vs. NCBI nr
Match: gi|147863969|emb|CAN83211.1| (hypothetical protein VITISV_010890 [Vitis vinifera])

HSP 1 Score: 80.5 bits (197), Expect = 4.3e-12
Identity = 56/152 (36.84%), Postives = 81/152 (53.29%), Query Frame = 1


Query: 87  SSSLPPI-PSTALLRPSGPTTPNKRAASPTASSSSSAIP---RNPS---SYSQIVR-PKV 146
           S   PP+ PS + ++ S  +  N    S ++ ++ S +P   ++PS   SYSQ V+ PK 
Sbjct: 36  SPDFPPLQPSKSFIQASKSSPKNIVVQSQSSPNTISTLPSPSQSPSPSYSYSQYVKKPK- 95

Query: 147 FQPRPPINGYFTKTTMVDLTIEPEFDGPSVYEVYNQIFPHEFNFLPEDLAKTRTFYKYIL 206
                         T+    IEPEF+   + ++   IFP   NF   D  KTR FY++IL
Sbjct: 96  --------------TLEIAFIEPEFNFEEIPKILPYIFPQGVNFNSNDPLKTRQFYEFIL 155

Query: 207 VDSKSAEITHVPDKNDPSKIIYSKLRIFRVLT 231
           VD+ S EITH  DKN+P  I +SK +I RV+T
Sbjct: 156 VDTDSVEITHNTDKNNPQXIAFSKCQILRVMT 172

The following BLAST results are available for this feature:

BLAST of MELO3C025831T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWK6_CUCSA	1.0e-31	87.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G385050 PE=4 SV=1	[more]
A0A0A0LUE7_CUCSA	5.5e-30	85.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G434180 PE=4 SV=1	[more]
E5GCE6_CUCME	6.1e-21	45.81	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
F6H9U7_VITVI	4.2e-14	33.85	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0085g00640 PE=4 SV=...	[more]
F6GVI8_VITVI	3.6e-13	34.55	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0116g01320 PE=4 SV=...	[more]

BLAST of MELO3C025831T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210273\|gb\|KGN65369.1\|	1.4e-31	87.50	hypothetical protein Csa_1G385050 [Cucumis sativus]	[more]
gi\|700210424\|gb\|KGN65520.1\|	7.9e-30	85.00	hypothetical protein Csa_1G434180 [Cucumis sativus]	[more]
gi\|307136323\|gb\|ADN34145.1\|	8.7e-21	45.81	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|147767380\|emb\|CAN66723.1\|	6.7e-13	33.85	hypothetical protein VITISV_022330 [Vitis vinifera]	[more]
gi\|147863969\|emb\|CAN83211.1\|	4.3e-12	36.84	hypothetical protein VITISV_010890 [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C025831	MELO3C025831	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C025831T1	MELO3C025831T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C025831T1.cds1	MELO3C025831T1.cds1	CDS