MELO3C025809T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C025809T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionUbiquitin-like protein ATG12
Locationchr4 : 18331375 .. 18334662 (+)
Sequence length838
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGAAACTTTGAATGGAGGGCTATTGATTTTCTAGAATTCATAGTTGACAATGAACTAAAAATTTGGGGCTTTTGGCATTGCAAAGCCCAAACTCAGGCCACGAACAATACGGAATTGCCCAACCAATATCTTTTGATCGAAATCGGAGAACGTACCCCACGAATTCTGCAGTCCACGGCCAAGGAAAACGATGACTTCTACAGAGTCGTCCACTTCTGCTCGAAAAGGTGAGCTTTAAAGGATGTATGAACAAGTCCAACTGTTTATTTTCCTATGTTTGATGAATCCAACATTCAAACTTTATTCAGTTTTCAGACTTAATTGTTCTGATGCAGAAGAAGATTTGTTTTGCAATTGTTGTTTTATTACGGTGCTTTCCTAATGACGTTTTCGATCAAGATTCATCGTGATTTATTCTGGTTTCGTTTCTGGCAGTGGTTGTCCTGTTGAGAGCAACTGGGGATGCTCCCATTCTCAAACAAACTAAGTTTAAGGTTTGTATTATGTCAATTTTCGTCAGTTTATAGATTTAAAGGTTAAAAATTTGTATCATACTGTTTAAACTGTAAATTGGAAATCAATCTTGATGCTTGTGAAAACTTTTGATAATTTGATTTGATTAAAAAACTGAACTTTTACCGTCTGATTCTAGTAATCATGTATACCTATGTAGGTAAGGTTGTGTGTATGTGTGTGATGTTCTCTGAGTGAGCTAAACGGACTAGGCTAATAGATGAAGAAGACGACCAATCTAAGAGCCGAAGGAATGAAGCTTAAACTCTGTTGTTACACAAGTATTAGATCCCATGGATACAATGCCACATCCTTATCCCGTGCAAAATTCACATTTCAATCAAGATATCATTTTTGTCGGGAGTGTGACCAAAGTGCCACATTGCATAGATAAGGGAAAATTATGTGTATATTTGTAAGAACAACTATGTTCAATAGTATGATAACTTTGGGTGAGATATAAAACAAAGTTGCGAGAGTTTATGCCCTAAGTGGGCAATATCATACTATTGCAAAATATGTGGAGGCGTTGGAGGGTTGTTGTCCTCACAATTATCATGTGGATAATCACTGAAACTTTGTTGAAGATTTTGTAAGGATTTTGGGGGCCTTATTAGGTTCTCTGTTAGTTTCTCTCGTTTCTCGTTGACTTACAATTTACTCGAATAGAACCCCTTCTTGTAGTTGGCTCTCTTTTTTATGGGCTTCTTGTTTAACCGTGTTTTTTCTTCCATTTTTCTCAATGTTCGGCTTTTCATCCAAAAAATGAACAAATAAACAAAAATTATTAATTATGAGAACTTGAAGAAATTTTCAATGGATAATCGATGACTGATTAATGACTATTTGGGGGGGGGGGGTGCTATATCCCTGTTATGCCGTGAATTTTTTCTGCACATGACTTGTGGTATTTATAAAATCTGGAATAAACATATAGAATCACCGGTCTTAGAATGTGCAGTTTTGTAAATTTTATACAGCAGCTCATCCATGAAAGTTCAACTTTTTGGAATTTGGTTTTCTACATTTGCAAGTTTATGGAAAACGTTCATTCACATATTTCATACATTTGACAGATGCCTGGCACAGACAAATTTATTAAAGTTATTGATTATATACGCCGGTCCATTCAACGGGACACCTTGGTATTCATCTGACTTGTGGAATAACCTCTTTTCCATCTGCCAATTCATTTGAAATTAATGACACTTCTCTATGCTAATTGTTTATATTCTTTGAAGTTTGTATTTGTCAACAGTGCATTCTCACCGGGTCCAGATGAGACAGTTATTGATCTATATAATGTGAGTTGATATTGACTCATTTCTTCTCTTTATGTTCAAGTTGCGTTTGTACACTGTTTATATTAACTTTTAGAAGAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCTGAAGCAAGATATCTGTAAGAACTCTTAGATTATCATGAAACAAAATATAGCATAAGATCATATGAGTAACCTTAAATGTTTTTTTTTTTTTTATCACCCTTCCCCGAGGGTAATTATTCTCGACTTCATAGCAATTTTTTAATCTGTTTCTTTACTTAGGTATACATATATGGTTTTTCATATCCACATGCATCTAGAGTTTTATCATCTTGTGGATTATTCTTTTTTGTGTGTCTATTTGCAGAACTTTGGAATTGATGGGAAGTTGGTGGTAAATTATGCCTGCTCCATGGCTTGGGGCTAATTTGCAGCATGGTAATGCTGTTTTATTTTGTGCTGAGGCTGTAAATAGTATCTTGAACAGTTCATTCTAAGTACTGTGATTTTAAACTCACCCATTACGAACTATAGTGGTAGTAATCCTTCATATTATTGGCTGCTTTCCCCAATGAAAAACGAATCAGTCAAGTTCTAGAGTCATACTTGTCAAGGTCCAGAGTTTGTAAATTAACTGTTTATTTGATCGACGTCTTTAATTAATTGTTTTAAGGTTGAATATGTTAACACAAGGATGTATTGTTCCAAGATATGGAAGCTCAAATTCTTGATTACCCTACTCAGTTTCATATTTTTCTTTTTACAACGTAACAGTTGTTGAGACC

mRNA sequence

ATTGAAACTTTGAATGGAGGGCTATTGATTTTCTAGAATTCATAGTTGACAATGAACTAAAAATTTGGGGCTTTTGGCATTGCAAAGCCCAAACTCAGGCCACGAACAATACGGAATTGCCCAACCAATATCTTTTGATCGAAATCGGAGAACGTACCCCACGAATTCTGCAGTCCACGGCCAAGGAAAACGATGACTTCTACAGAGTCGTCCACTTCTGCTCGAAAAGTGGTTGTCCTGTTGAGAGCAACTGGGGATGCTCCCATTCTCAAACAAACTAAGTTTAAGATGCCTGGCACAGACAAATTTATTAAAGTTATTGATTATATACGCCGGTCCATTCAACGGGACACCTTGTTTGTATTTGTCAACAGTGCATTCTCACCGGGTCCAGATGAGACAGTTATTGATCTATATAATAACTTTGGAATTGATGGGAAGTTGGTGGTAAATTATGCCTGCTCCATGGCTTGGGGCTAATTTGCAGCATGGTAATGCTGTTTTATTTTGTGCTGAGGCTGTAAATAGTATCTTGAACAGTTCATTCTAAGTACTGTGATTTTAAACTCACCCATTACGAACTATAGTGGTAGTAATCCTTCATATTATTGGCTGCTTTCCCCAATGAAAAACGAATCAGTCAAGTTCTAGAGTCATACTTGTCAAGGTCCAGAGTTTGTAAATTAACTGTTTATTTGATCGACGTCTTTAATTAATTGTTTTAAGGTTGAATATGTTAACACAAGGATGTATTGTTCCAAGATATGGAAGCTCAAATTCTTGATTACCCTACTCAGTTTCATATTTTTCTTTTTACAACGTAACAGTTGTTGAGACC

Coding sequence (CDS)

ATGACTTCTACAGAGTCGTCCACTTCTGCTCGAAAAGTGGTTGTCCTGTTGAGAGCAACTGGGGATGCTCCCATTCTCAAACAAACTAAGTTTAAGATGCCTGGCACAGACAAATTTATTAAAGTTATTGATTATATACGCCGGTCCATTCAACGGGACACCTTGTTTGTATTTGTCAACAGTGCATTCTCACCGGGTCCAGATGAGACAGTTATTGATCTATATAATAACTTTGGAATTGATGGGAAGTTGGTGGTAAATTATGCCTGCTCCATGGCTTGGGGCTAA

Protein sequence

MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG*
Homology
[Close]
BLAST of MELO3C025809T1 vs. Swiss-Prot
Match: ATG12_MEDTR (Ubiquitin-like protein ATG12 OS=Medicago truncatula GN=ATG12 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.7e-37
Identity = 74/95 (77.89%), Postives = 81/95 (85.26%), Query Frame = 1 

Query: 1  MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          M + ES TS RKVVV LRATGDAPILKQ+KFK+ GTDKF KVID++RR + R++LFV+VN
Sbjct: 1  MAAAESPTSVRKVVVHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRESLFVYVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSP PDE VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 61 SAFSPNPDELVIDLYNNFGFDGKLVVNYACSMAWG 95

[Close]
BLAST of MELO3C025809T1 vs. Swiss-Prot
Match: AT12A_ARATH (Ubiquitin-like protein ATG12A OS=Arabidopsis thaliana GN=ATG12A PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.3e-36
Identity = 72/94 (76.60%), Postives = 80/94 (85.11%), Query Frame = 1 

Query: 2  TSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNS 61
          T + S +S RKVVV LRATG APILKQ+KFK+PGTDKF KVID++RR +  D+LFV+VNS
Sbjct: 3  TESSSPSSVRKVVVHLRATGGAPILKQSKFKIPGTDKFAKVIDFLRRQLHSDSLFVYVNS 62

Query: 62 AFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          AFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 63 AFSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 96

[Close]
BLAST of MELO3C025809T1 vs. Swiss-Prot
Match: AT12B_ARATH (Ubiquitin-like protein ATG12B OS=Arabidopsis thaliana GN=ATG12B PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.8e-34
Identity = 68/93 (73.12%), Postives = 78/93 (83.87%), Query Frame = 1 

Query: 3  STESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSA 62
          +TES  S +K+VV LRATG APILKQ+KFK+ G+DKF  VID++RR +  D+LFV+VNSA
Sbjct: 2  ATESPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSDSLFVYVNSA 61

Query: 63 FSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          FSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 62 FSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 94

[Close]
BLAST of MELO3C025809T1 vs. Swiss-Prot
Match: ATG12_ORYSI (Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. indica GN=ATG12 PE=3 SV=2)

HSP 1 Score: 131.0 bits (328), Expect = 7.2e-30
Identity = 59/85 (69.41%), Postives = 73/85 (85.88%), Query Frame = 1 

Query: 11 RKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDET 70
          +KVVV  R+TG+AP LKQ+KFK+ G +KF+K+ID++RR I +DT+F++VNSAFSP PDE 
Sbjct: 9  KKVVVHFRSTGNAPQLKQSKFKIGGNEKFLKIIDFLRRQIHQDTVFLYVNSAFSPNPDEL 68

Query: 71 VIDLYNNFGIDGKLVVNYACSMAWG 96
          +IDLYNNFGIDG+LVVNYA SMAWG
Sbjct: 69 IIDLYNNFGIDGQLVVNYASSMAWG 93

[Close]
BLAST of MELO3C025809T1 vs. Swiss-Prot
Match: ATG12_ORYSJ (Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. japonica GN=ATG12 PE=3 SV=2)

HSP 1 Score: 131.0 bits (328), Expect = 7.2e-30
Identity = 59/85 (69.41%), Postives = 73/85 (85.88%), Query Frame = 1 

Query: 11 RKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSAFSPGPDET 70
          +KVVV  R+TG+AP LKQ+KFK+ G +KF+K+ID++RR I +DT+F++VNSAFSP PDE 
Sbjct: 9  KKVVVHFRSTGNAPQLKQSKFKIGGNEKFLKIIDFLRRQIHQDTVFLYVNSAFSPNPDEL 68

Query: 71 VIDLYNNFGIDGKLVVNYACSMAWG 96
          +IDLYNNFGIDG+LVVNYA SMAWG
Sbjct: 69 IIDLYNNFGIDGQLVVNYASSMAWG 93

[Close]
BLAST of MELO3C025809T1 vs. TrEMBL
Match: A0A0A0LIA6_CUCSA (Ubiquitin-like protein ATG12 OS=Cucumis sativus GN=Csa_3G846020 PE=3 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.1e-45
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 1 

Query: 1  MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          MTSTESS+SARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN
Sbjct: 1  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]
BLAST of MELO3C025809T1 vs. TrEMBL
Match: A0A061GBK9_THECC (Ubiquitin-like protein ATG12 OS=Theobroma cacao GN=TCM_029125 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.1e-36
Identity = 76/93 (81.72%), Postives = 82/93 (88.17%), Query Frame = 1 

Query: 3  STESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSA 62
          + ES TS RKVVV LRATGDAPILKQ KFK+PGTDKF KVID++RR + RDTLFV+VNSA
Sbjct: 2  AAESPTSVRKVVVHLRATGDAPILKQAKFKIPGTDKFAKVIDFLRRQLHRDTLFVYVNSA 61

Query: 63 FSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          FSP PDE VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 62 FSPNPDELVIDLYNNFGFDGKLVVNYACSMAWG 94

[Close]
BLAST of MELO3C025809T1 vs. TrEMBL
Match: A0A061GCF0_THECC (Ubiquitin-like protein ATG12 (Fragment) OS=Theobroma cacao GN=TCM_029125 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.1e-36
Identity = 76/93 (81.72%), Postives = 82/93 (88.17%), Query Frame = 1 

Query: 3   STESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSA 62
           + ES TS RKVVV LRATGDAPILKQ KFK+PGTDKF KVID++RR + RDTLFV+VNSA
Sbjct: 22  AAESPTSVRKVVVHLRATGDAPILKQAKFKIPGTDKFAKVIDFLRRQLHRDTLFVYVNSA 81

Query: 63  FSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
           FSP PDE VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 82  FSPNPDELVIDLYNNFGFDGKLVVNYACSMAWG 114

[Close]
BLAST of MELO3C025809T1 vs. TrEMBL
Match: G7L6T7_MEDTR (Ubiquitin-like protein ATG12 OS=Medicago truncatula GN=MTR_8g020500 PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 3.0e-35
Identity = 74/95 (77.89%), Postives = 83/95 (87.37%), Query Frame = 1 

Query: 1  MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          M + ES TS RKVVV LRATGDAPILKQ+KFK+ GTDKF KVID++RR + R++LFV+VN
Sbjct: 1  MAAAESPTSVRKVVVHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRESLFVYVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSP PDE VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 61 SAFSPNPDELVIDLYNNFGFDGKLVVNYACSMAWG 95

[Close]
BLAST of MELO3C025809T1 vs. TrEMBL
Match: I3S9A1_LOTJA (Ubiquitin-like protein ATG12 OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 3.0e-35
Identity = 73/93 (78.49%), Postives = 82/93 (88.17%), Query Frame = 1 

Query: 3  STESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSA 62
          S ES +S RKVVV LRATGDAPILKQ+KFK+ GTDKF KVID++RR + RDTLFV+VNSA
Sbjct: 2  SVESPSSVRKVVVHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRDTLFVYVNSA 61

Query: 63 FSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          FSP PDE +IDLYNNFG DGKL+VNYACSMAWG
Sbjct: 62 FSPNPDELIIDLYNNFGFDGKLIVNYACSMAWG 94

[Close]
BLAST of MELO3C025809T1 vs. TAIR10
Match: AT1G54210.1 (AT1G54210.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 152.5 bits (384), Expect = 1.3e-37
Identity = 72/94 (76.60%), Postives = 80/94 (85.11%), Query Frame = 1 

Query: 2  TSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNS 61
          T + S +S RKVVV LRATG APILKQ+KFK+PGTDKF KVID++RR +  D+LFV+VNS
Sbjct: 3  TESSSPSSVRKVVVHLRATGGAPILKQSKFKIPGTDKFAKVIDFLRRQLHSDSLFVYVNS 62

Query: 62 AFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          AFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 63 AFSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 96

[Close]
BLAST of MELO3C025809T1 vs. TAIR10
Match: AT3G13970.1 (AT3G13970.1 Ubiquitin-like superfamily protein)

HSP 1 Score: 145.6 bits (366), Expect = 1.6e-35
Identity = 68/93 (73.12%), Postives = 78/93 (83.87%), Query Frame = 1 

Query: 3  STESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSA 62
          +TES  S +K+VV LRATG APILKQ+KFK+ G+DKF  VID++RR +  D+LFV+VNSA
Sbjct: 2  ATESPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSDSLFVYVNSA 61

Query: 63 FSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          FSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 62 FSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 94

[Close]
BLAST of MELO3C025809T1 vs. NCBI nr
Match: gi|659128006|ref|XP_008464001.1| (PREDICTED: ubiquitin-like protein ATG12 [Cucumis melo])

HSP 1 Score: 191.8 bits (486), Expect = 5.5e-46
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 

Query: 1  MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN
Sbjct: 1  MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]
BLAST of MELO3C025809T1 vs. NCBI nr
Match: gi|449466596|ref|XP_004151012.1| (PREDICTED: ubiquitin-like protein ATG12 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 1.6e-45
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 1 

Query: 1  MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          MTSTESS+SARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN
Sbjct: 1  MTSTESSSSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 95

[Close]
BLAST of MELO3C025809T1 vs. NCBI nr
Match: gi|470135777|ref|XP_004303685.1| (PREDICTED: ubiquitin-like protein ATG12 [Fragaria vesca subsp. vesca])

HSP 1 Score: 162.5 bits (410), Expect = 3.6e-37
Identity = 76/95 (80.00%), Postives = 86/95 (90.53%), Query Frame = 1 

Query: 1  MTSTESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVN 60
          M+STES T+A+KVV+ LRATGDAPILKQ KFK+PGTDKF KVID++RR + RDTLFV+VN
Sbjct: 1  MSSTESPTAAKKVVIHLRATGDAPILKQAKFKIPGTDKFAKVIDFLRRQLHRDTLFVYVN 60

Query: 61 SAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          SAFSP PDE V+DLYNNFG DGKLVVNYACSMAWG
Sbjct: 61 SAFSPNPDELVMDLYNNFGFDGKLVVNYACSMAWG 95

[Close]
BLAST of MELO3C025809T1 vs. NCBI nr
Match: gi|502156412|ref|XP_004510461.1| (PREDICTED: ubiquitin-like protein ATG12 [Cicer arietinum])

HSP 1 Score: 160.2 bits (404), Expect = 1.8e-36
Identity = 77/93 (82.80%), Postives = 84/93 (90.32%), Query Frame = 1 

Query: 3  STESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSA 62
          +TES TSARKVVV LRATGDAPILKQ+KFK+ GTDKF KVID++RR + RDTLFV+VNSA
Sbjct: 2  ATESPTSARKVVVHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRDTLFVYVNSA 61

Query: 63 FSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
          FSP PDE VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 62 FSPNPDELVIDLYNNFGFDGKLVVNYACSMAWG 94

[Close]
BLAST of MELO3C025809T1 vs. NCBI nr
Match: gi|590620730|ref|XP_007024614.1| (Ubiquitin-like superfamily protein isoform 2, partial [Theobroma cacao])

HSP 1 Score: 159.5 bits (402), Expect = 3.0e-36
Identity = 76/93 (81.72%), Postives = 82/93 (88.17%), Query Frame = 1 

Query: 3   STESSTSARKVVVLLRATGDAPILKQTKFKMPGTDKFIKVIDYIRRSIQRDTLFVFVNSA 62
           + ES TS RKVVV LRATGDAPILKQ KFK+PGTDKF KVID++RR + RDTLFV+VNSA
Sbjct: 22  AAESPTSVRKVVVHLRATGDAPILKQAKFKIPGTDKFAKVIDFLRRQLHRDTLFVYVNSA 81

Query: 63  FSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG 96
           FSP PDE VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 82  FSPNPDELVIDLYNNFGFDGKLVVNYACSMAWG 114

The following BLAST results are available for this feature:
BLAST of MELO3C025809T1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATG12_MEDTR2.7e-3777.89Ubiquitin-like protein ATG12 OS=Medicago truncatula GN=ATG12 PE=3 SV=1[more]
AT12A_ARATH2.3e-3676.60Ubiquitin-like protein ATG12A OS=Arabidopsis thaliana GN=ATG12A PE=1 SV=1[more]
AT12B_ARATH2.8e-3473.12Ubiquitin-like protein ATG12B OS=Arabidopsis thaliana GN=ATG12B PE=1 SV=1[more]
ATG12_ORYSI7.2e-3069.41Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. indica GN=ATG12 PE=3 SV=2[more]
ATG12_ORYSJ7.2e-3069.41Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. japonica GN=ATG12 PE=3 SV=2[more]
BLAST of MELO3C025809T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIA6_CUCSA1.1e-4598.95Ubiquitin-like protein ATG12 OS=Cucumis sativus GN=Csa_3G846020 PE=3 SV=1[more]
A0A061GBK9_THECC2.1e-3681.72Ubiquitin-like protein ATG12 OS=Theobroma cacao GN=TCM_029125 PE=3 SV=1[more]
A0A061GCF0_THECC2.1e-3681.72Ubiquitin-like protein ATG12 (Fragment) OS=Theobroma cacao GN=TCM_029125 PE=3 SV... [more]
G7L6T7_MEDTR3.0e-3577.89Ubiquitin-like protein ATG12 OS=Medicago truncatula GN=MTR_8g020500 PE=3 SV=1[more]
I3S9A1_LOTJA3.0e-3578.49Ubiquitin-like protein ATG12 OS=Lotus japonicus PE=2 SV=1[more]
BLAST of MELO3C025809T1 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G54210.11.3e-3776.60 Ubiquitin-like superfamily protein[more]
AT3G13970.11.6e-3573.12 Ubiquitin-like superfamily protein[more]
BLAST of MELO3C025809T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659128006|ref|XP_008464001.1|5.5e-46100.00PREDICTED: ubiquitin-like protein ATG12 [Cucumis melo][more]
gi|449466596|ref|XP_004151012.1|1.6e-4598.95PREDICTED: ubiquitin-like protein ATG12 [Cucumis sativus][more]
gi|470135777|ref|XP_004303685.1|3.6e-3780.00PREDICTED: ubiquitin-like protein ATG12 [Fragaria vesca subsp. vesca][more]
gi|502156412|ref|XP_004510461.1|1.8e-3682.80PREDICTED: ubiquitin-like protein ATG12 [Cicer arietinum][more]
gi|590620730|ref|XP_007024614.1|3.0e-3681.72Ubiquitin-like superfamily protein isoform 2, partial [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR007242Atg12
Vocabulary: Biological Process
TermDefinition
GO:0000045autophagosome assembly
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000045 autophagosome assembly
biological_process GO:0015031 protein transport
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C025809MELO3C025809gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C025809T1MELO3C025809T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C025809T1.cds1MELO3C025809T1.cds1CDS
MELO3C025809T1.cds2MELO3C025809T1.cds2CDS
MELO3C025809T1.cds3MELO3C025809T1.cds3CDS
MELO3C025809T1.cds4MELO3C025809T1.cds4CDS
MELO3C025809T1.cds5MELO3C025809T1.cds5CDS


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007242Ubiquitin-like protein Atg12PANTHERPTHR13385AUTOPHAGY PROTEIN 12coord: 1..95
score: 1.9
IPR007242Ubiquitin-like protein Atg12PFAMPF04110APG12coord: 12..95
score: 7.8
NoneNo IPR availableGENE3DG3DSA:3.10.20.90coord: 16..95
score: 9.3
NoneNo IPR availablePANTHERPTHR13385:SF0UBIQUITIN-LIKE PROTEIN ATG12coord: 1..95
score: 1.9