MELO3C025041T2 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C025041T2
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Alpha/beta hydrolase, putative
Location	chr3 : 16315170 .. 16315424 (-)
Sequence length	255

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGCTACAGCGCTGGGATCCGTCTCCGCCTCCTCCTTTCTCTCACAGATTGCCTCCATCGGTGCTTCTTACGCCCCTTCGACCTCTACCTCCTTCTCCCTTGTACTTCCCAGGCCCCTCTCTCAGTCAAGTTCCGGAGTCCTACATACTCTATCTCCGCCGCCTGAATCGGTTCGACGTGCTCGGGTGAGTTCAACTTTCATCACTTCTTTCTTCAACTGTGAAGGTGTTAGCTTACTCTTGATGCGATGA

mRNA sequence

ATGTTTGCTACAGCGCTGGGATCCGTCTCCGCCTCCTCCTTTCTCTCACAGATTGCCTCCATCGGTGCTTCTTACGCCCCTTCGACCTCTACCTCCTTCTCCCTTGTACTTCCCAGGCCCCTCTCTCAGTCAAGTTCCGGAGTCCTACATACTCTATCTCCGCCGCCTGAATCGGTTCGACGTGCTCGGGTGAGTTCAACTTTCATCACTTCTTTCTTCAACTGTGAAGGTGTTAGCTTACTCTTGATGCGATGA

Coding sequence (CDS)

ATGTTTGCTACAGCGCTGGGATCCGTCTCCGCCTCCTCCTTTCTCTCACAGATTGCCTCCATCGGTGCTTCTTACGCCCCTTCGACCTCTACCTCCTTCTCCCTTGTACTTCCCAGGCCCCTCTCTCAGTCAAGTTCCGGAGTCCTACATACTCTATCTCCGCCGCCTGAATCGGTTCGACGTGCTCGGGTGAGTTCAACTTTCATCACTTCTTTCTTCAACTGTGAAGGTGTTAGCTTACTCTTGATGCGATGA

Protein sequence

MFATALGSVSASSFLSQIASIGASYAPSTSTSFSLVLPRPLSQSSSGVLHTLSPPPESVRRARVSSTFITSFFNCEGVSLLLMR*

Homology

[Close]

BLAST of MELO3C025041T2 vs. TrEMBL
Match: A0A0A0KAI8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014690 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.9e-18
Identity = 56/66 (84.85%), Postives = 57/66 (86.36%), Query Frame = 1


Query: 1  MFATALGSVSAS--SFLSQIASIGASYAPSTSTSFSLVLPRPLSQSSSGVLHTLSPPPES 60
          MFA  LGSVSAS  SFLSQIASIG SYAPSTSTS SLVL  PLSQSSSG+LHTLSPPPES
Sbjct: 1  MFAAPLGSVSASPSSFLSQIASIGPSYAPSTSTSSSLVLHMPLSQSSSGLLHTLSPPPES 60

Query: 61 VRRARV 65
          V RARV
Sbjct: 61 VGRARV 66

[Close]

BLAST of MELO3C025041T2 vs. NCBI nr
Match: gi|659126287|ref|XP_008463105.1| (PREDICTED: uncharacterized protein LOC103501331 isoform X3 [Cucumis melo])

HSP 1 Score: 122.1 bits (305), Expect = 4.7e-25
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 1  MFATALGSVSASSFLSQIASIGASYAPSTSTSFSLVLPRPLSQSSSGVLHTLSPPPESVR 60
          MFATALGSVSASSFLSQIASIGASYAPSTSTSFSLVLPRPLSQSSSGVLHTLSPPPESVR
Sbjct: 1  MFATALGSVSASSFLSQIASIGASYAPSTSTSFSLVLPRPLSQSSSGVLHTLSPPPESVR 60

Query: 61 RARV 65
          RARV
Sbjct: 61 RARV 64

[Close]

BLAST of MELO3C025041T2 vs. NCBI nr
Match: gi|659126281|ref|XP_008463102.1| (PREDICTED: pheophytinase, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 122.1 bits (305), Expect = 4.7e-25
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 1  MFATALGSVSASSFLSQIASIGASYAPSTSTSFSLVLPRPLSQSSSGVLHTLSPPPESVR 60
          MFATALGSVSASSFLSQIASIGASYAPSTSTSFSLVLPRPLSQSSSGVLHTLSPPPESVR
Sbjct: 1  MFATALGSVSASSFLSQIASIGASYAPSTSTSFSLVLPRPLSQSSSGVLHTLSPPPESVR 60

Query: 61 RARV 65
          RARV
Sbjct: 61 RARV 64

[Close]

BLAST of MELO3C025041T2 vs. NCBI nr
Match: gi|778709753|ref|XP_011656450.1| (PREDICTED: uncharacterized protein LOC101215106 isoform X2 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 5.6e-18
Identity = 56/66 (84.85%), Postives = 57/66 (86.36%), Query Frame = 1


Query: 1  MFATALGSVSAS--SFLSQIASIGASYAPSTSTSFSLVLPRPLSQSSSGVLHTLSPPPES 60
          MFA  LGSVSAS  SFLSQIASIG SYAPSTSTS SLVL  PLSQSSSG+LHTLSPPPES
Sbjct: 1  MFAAPLGSVSASPSSFLSQIASIGPSYAPSTSTSSSLVLHMPLSQSSSGLLHTLSPPPES 60

Query: 61 VRRARV 65
          V RARV
Sbjct: 61 VGRARV 66

[Close]

BLAST of MELO3C025041T2 vs. NCBI nr
Match: gi|449441232|ref|XP_004138386.1| (PREDICTED: pheophytinase, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 5.6e-18
Identity = 56/66 (84.85%), Postives = 57/66 (86.36%), Query Frame = 1


Query: 1  MFATALGSVSAS--SFLSQIASIGASYAPSTSTSFSLVLPRPLSQSSSGVLHTLSPPPES 60
          MFA  LGSVSAS  SFLSQIASIG SYAPSTSTS SLVL  PLSQSSSG+LHTLSPPPES
Sbjct: 1  MFAAPLGSVSASPSSFLSQIASIGPSYAPSTSTSSSLVLHMPLSQSSSGLLHTLSPPPES 60

Query: 61 VRRARV 65
          V RARV
Sbjct: 61 VGRARV 66

The following BLAST results are available for this feature:

BLAST of MELO3C025041T2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAI8_CUCSA	3.9e-18	84.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014690 PE=4 SV=1	[more]

BLAST of MELO3C025041T2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126287\|ref\|XP_008463105.1\|	4.7e-25	100.00	PREDICTED: uncharacterized protein LOC103501331 isoform X3 [Cucumis melo]	[more]
gi\|659126281\|ref\|XP_008463102.1\|	4.7e-25	100.00	PREDICTED: pheophytinase, chloroplastic isoform X1 [Cucumis melo]	[more]
gi\|778709753\|ref\|XP_011656450.1\|	5.6e-18	84.85	PREDICTED: uncharacterized protein LOC101215106 isoform X2 [Cucumis sativus]	[more]
gi\|449441232\|ref\|XP_004138386.1\|	5.6e-18	84.85	PREDICTED: pheophytinase, chloroplastic isoform X1 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019761	glucosinolate biosynthetic process
biological_process	GO:0010264	myo-inositol hexakisphosphate biosynthetic process
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0009657	plastid organization
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009534	chloroplast thylakoid
molecular_function	GO:0016787	hydrolase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C025041	MELO3C025041	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C025041T2	MELO3C025041T2-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C025041T2.cds1	MELO3C025041T2.cds1	CDS