MELO3C024487.2.1 (mRNA) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024487.2.1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Expansin
Location	chr08 : 10066747 .. 10066908 (-)
Sequence length	162

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAACGGGCACCAACCACTGTCCGCCCAATTACAACCTCCCTAGAGACAATGGTGGATGGTGCAATCCCCCACTCGAGCATTTCGACATTGCGAAGCCTGTTTTCCTCAACATTGCTGAGTTCAAGGCTGGCATTGTCCCTGTCACTTACCGCAGGTAT

mRNA sequence

ATGGTAACGGGCACCAACCACTGTCCGCCCAATTACAACCTCCCTAGAGACAATGGTGGATGGTGCAATCCCCCACTCGAGCATTTCGACATTGCGAAGCCTGTTTTCCTCAACATTGCTGAGTTCAAGGCTGGCATTGTCCCTGTCACTTACCGCAGGTAT

Coding sequence (CDS)

ATGGTAACGGGCACCAACCACTGTCCGCCCAATTACAACCTCCCTAGAGACAATGGTGGATGGTGCAATCCCCCACTCGAGCATTTCGACATTGCGAAGCCTGTTTTCCTCAACATTGCTGAGTTCAAGGCTGGCATTGTCCCTGTCACTTACCGCAGGTAT

Protein sequence

MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRRY

Homology

[Close]

BLAST of MELO3C024487.2.1 vs. NCBI nr
Match: XP_008462508.1 (PREDICTED: expansin-A9-like [Cucumis melo])

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-25
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVP+TYRR
Sbjct: 126 MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPITYRR 178

[Close]

BLAST of MELO3C024487.2.1 vs. NCBI nr
Match: XP_004143366.1 (PREDICTED: expansin-A3-like [Cucumis sativus] >KGN48207.1 hypothetical protein Csa_6G448160 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 6.4e-24
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           +VTGTNHCPPN+NLP DNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVP+TYRR
Sbjct: 126 VVTGTNHCPPNHNLPNDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPITYRR 178

[Close]

BLAST of MELO3C024487.2.1 vs. NCBI nr
Match: XP_022925799.1 (expansin-A9-like [Cucurbita moschata])

HSP 1 Score: 109.8 bits (273), Expect = 3.0e-21
Identity = 42/53 (79.25%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           +VTGTNHCPPNYN   DNGGWCNPPLEHFDIAKPVF N+A++KAG++P+TYRR
Sbjct: 131 VVTGTNHCPPNYNAANDNGGWCNPPLEHFDIAKPVFANLADYKAGVIPITYRR 183

[Close]

BLAST of MELO3C024487.2.1 vs. NCBI nr
Match: XP_023543964.1 (expansin-A9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 109.8 bits (273), Expect = 3.0e-21
Identity = 42/53 (79.25%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           +VTGTNHCPPNYN   DNGGWCNPPLEHFDIAKPVF N+A++KAG++P+TYRR
Sbjct: 131 VVTGTNHCPPNYNAANDNGGWCNPPLEHFDIAKPVFANLADYKAGVIPITYRR 183

[Close]

BLAST of MELO3C024487.2.1 vs. NCBI nr
Match: XP_004306268.2 (PREDICTED: expansin-A9-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 108.2 bits (269), Expect = 8.7e-21
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 2   VTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           VT TNHCPPNYNLP DNGGWCN P EHFDIAKPVFLNIAE+KAGIVP+ YRR
Sbjct: 109 VTATNHCPPNYNLPSDNGGWCNAPREHFDIAKPVFLNIAEYKAGIVPIIYRR 160

[Close]

BLAST of MELO3C024487.2.1 vs. TAIR10
Match: AT5G02260.1 (expansin A9)

HSP 1 Score: 95.1 bits (235), Expect = 1.4e-20
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           ++T TN CPPN+N   DNGGWCNPP EHFD+A P+FL+IA++KAGIVPV+YRR
Sbjct: 104 LITATNFCPPNFNQASDNGGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYRR 156

[Close]

BLAST of MELO3C024487.2.1 vs. TAIR10
Match: AT2G39700.1 (expansin A4)

HSP 1 Score: 93.6 bits (231), Expect = 4.0e-20
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           ++T TN CPPN   P DNGGWCNPP EHFD+A PVFL IA+++AGIVPV+YRR
Sbjct: 103 LITATNFCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRR 155

[Close]

BLAST of MELO3C024487.2.1 vs. TAIR10
Match: AT1G26770.2 (expansin A10)

HSP 1 Score: 91.7 bits (226), Expect = 1.5e-19
Identity = 37/53 (69.81%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           +VT TN CPPN  L  +NGGWCNPPLEHFD+A+PVF  IA+++AGIVPV+YRR
Sbjct: 106 VVTATNFCPPNNALANNNGGWCNPPLEHFDLAQPVFQRIAQYRAGIVPVSYRR 158

[Close]

BLAST of MELO3C024487.2.1 vs. TAIR10
Match: AT3G55500.1 (expansin A16)

HSP 1 Score: 91.7 bits (226), Expect = 1.5e-19
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 0


Query: 2   VTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           VT TN CPPN   P DNGGWCNPP  HFD+A PVFL IAE++AGIVP++YRR
Sbjct: 107 VTATNFCPPNLAQPSDNGGWCNPPRSHFDLAMPVFLKIAEYRAGIVPISYRR 158

[Close]

BLAST of MELO3C024487.2.1 vs. TAIR10
Match: AT2G40610.1 (expansin A8)

HSP 1 Score: 91.3 bits (225), Expect = 2.0e-19
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 2   VTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           VT TN CPPN  L  DNGGWCNPPL+HFD+A+P FL IA+++AGIVPV++RR
Sbjct: 101 VTATNFCPPNPGLSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRR 152

[Close]

BLAST of MELO3C024487.2.1 vs. Swiss-Prot
Match: sp|Q852A1|EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 6.6e-20
Identity = 38/53 (71.70%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           ++T TN CPPNY LP DNGGWCNPP  HFD+A P+FL+IAE++AGIVPV+YRR
Sbjct: 110 LITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRR 162

[Close]

BLAST of MELO3C024487.2.1 vs. Swiss-Prot
Match: sp|Q9LZ99|EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana OX=3702 GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.5e-19
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           ++T TN CPPN+N   DNGGWCNPP EHFD+A P+FL+IA++KAGIVPV+YRR
Sbjct: 104 LITATNFCPPNFNQASDNGGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYRR 156

[Close]

BLAST of MELO3C024487.2.1 vs. Swiss-Prot
Match: sp|O48818|EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana OX=3702 GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 7.3e-19
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           ++T TN CPPN   P DNGGWCNPP EHFD+A PVFL IA+++AGIVPV+YRR
Sbjct: 103 LITATNFCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRR 155

[Close]

BLAST of MELO3C024487.2.1 vs. Swiss-Prot
Match: sp|A2Y5R6|EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica OX=39946 GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.6e-18
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 2   VTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           VT TN CPPNY LP D+GGWCNPP  HFD+A+P FL+IA+++AGIVPV++RR
Sbjct: 95  VTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRR 146

[Close]

BLAST of MELO3C024487.2.1 vs. Swiss-Prot
Match: sp|Q0DHB7|EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.6e-18
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 2   VTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           VT TN CPPNY LP D+GGWCNPP  HFD+A+P FL+IA+++AGIVPV++RR
Sbjct: 95  VTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRR 146

[Close]

BLAST of MELO3C024487.2.1 vs. TrEMBL
Match: tr|A0A1S3CH49|A0A1S3CH49_CUCME (Expansin OS=Cucumis melo OX=3656 GN=LOC103500844 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.0e-25
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVP+TYRR
Sbjct: 126 MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPITYRR 178

[Close]

BLAST of MELO3C024487.2.1 vs. TrEMBL
Match: tr|A0A0A0KIG7|A0A0A0KIG7_CUCSA (Expansin OS=Cucumis sativus OX=3659 GN=Csa_6G448160 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.3e-24
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           +VTGTNHCPPN+NLP DNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVP+TYRR
Sbjct: 126 VVTGTNHCPPNHNLPNDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPITYRR 178

[Close]

BLAST of MELO3C024487.2.1 vs. TrEMBL
Match: tr|A0A2P6RB60|A0A2P6RB60_ROSCH (Expansin OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0470931 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.8e-21
Identity = 45/52 (86.54%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 2   VTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           VT TNHCPPNYNLP DNGGWCN P EHFDIAKPVFLNIAE+KAGIVP+ YRR
Sbjct: 106 VTATNHCPPNYNLPSDNGGWCNAPREHFDIAKPVFLNIAEYKAGIVPIIYRR 157

[Close]

BLAST of MELO3C024487.2.1 vs. TrEMBL
Match: tr|A0A199UQM8|A0A199UQM8_ANACO (Malate dehydrogenase (NADP), chloroplastic OS=Ananas comosus OX=4615 GN=ACMD2_11949 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.4e-20
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           +VTGTNHCPPNY LP DNGGWCNPP  HFD+A P FL IAE+KAGIVPVTYRR
Sbjct: 132 VVTGTNHCPPNYYLPSDNGGWCNPPRTHFDLAMPAFLQIAEYKAGIVPVTYRR 184

[Close]

BLAST of MELO3C024487.2.1 vs. TrEMBL
Match: tr|A0A2G2VUT3|A0A2G2VUT3_CAPBA (Expansin OS=Capsicum baccatum OX=33114 GN=CQW23_24448 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.1e-19
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1   MVTGTNHCPPNYNLPRDNGGWCNPPLEHFDIAKPVFLNIAEFKAGIVPVTYRR 54
           +VTGTN CPPNY LP DNGGWCNPP  HFD+A P+FL IAE++AGIVPVTYRR
Sbjct: 104 LVTGTNFCPPNYGLPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVTYRR 156

The following BLAST results are available for this feature:

BLAST of MELO3C024487.2.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462508.1	1.5e-25	98.11	PREDICTED: expansin-A9-like [Cucumis melo]	[more]
XP_004143366.1	6.4e-24	92.45	PREDICTED: expansin-A3-like [Cucumis sativus] >KGN48207.1 hypothetical protein C...	[more]
XP_022925799.1	3.0e-21	79.25	expansin-A9-like [Cucurbita moschata]	[more]
XP_023543964.1	3.0e-21	79.25	expansin-A9-like [Cucurbita pepo subsp. pepo]	[more]
XP_004306268.2	8.7e-21	86.54	PREDICTED: expansin-A9-like [Fragaria vesca subsp. vesca]	[more]

BLAST of MELO3C024487.2.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G02260.1	1.4e-20	69.81	expansin A9	[more]
AT2G39700.1	4.0e-20	69.81	expansin A4	[more]
AT1G26770.2	1.5e-19	69.81	expansin A10	[more]
AT3G55500.1	1.5e-19	71.15	expansin A16	[more]
AT2G40610.1	2.0e-19	69.23	expansin A8	[more]

BLAST of MELO3C024487.2.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q852A1\|EXPA7_ORYSJ	6.6e-20	71.70	Expansin-A7 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA7 PE=2 SV=1	[more]
sp\|Q9LZ99\|EXPA9_ARATH	2.5e-19	69.81	Expansin-A9 OS=Arabidopsis thaliana OX=3702 GN=EXPA9 PE=2 SV=1	[more]
sp\|O48818\|EXPA4_ARATH	7.3e-19	69.81	Expansin-A4 OS=Arabidopsis thaliana OX=3702 GN=EXPA4 PE=1 SV=1	[more]
sp\|A2Y5R6\|EXPA4_ORYSI	1.6e-18	69.23	Expansin-A4 OS=Oryza sativa subsp. indica OX=39946 GN=EXPA4 PE=2 SV=1	[more]
sp\|Q0DHB7\|EXPA4_ORYSJ	1.6e-18	69.23	Expansin-A4 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA4 PE=2 SV=1	[more]

BLAST of MELO3C024487.2.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CH49\|A0A1S3CH49_CUCME	1.0e-25	98.11	Expansin OS=Cucumis melo OX=3656 GN=LOC103500844 PE=3 SV=1	[more]
tr\|A0A0A0KIG7\|A0A0A0KIG7_CUCSA	4.3e-24	92.45	Expansin OS=Cucumis sativus OX=3659 GN=Csa_6G448160 PE=3 SV=1	[more]
tr\|A0A2P6RB60\|A0A2P6RB60_ROSCH	5.8e-21	86.54	Expansin OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0470931 PE=3 SV=1	[more]
tr\|A0A199UQM8\|A0A199UQM8_ANACO	6.4e-20	81.13	Malate dehydrogenase (NADP), chloroplastic OS=Ananas comosus OX=4615 GN=ACMD2_11...	[more]
tr\|A0A2G2VUT3\|A0A2G2VUT3_CAPBA	4.1e-19	77.36	Expansin OS=Capsicum baccatum OX=33114 GN=CQW23_24448 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0009664	plant-type cell wall organization

Vocabulary: **INTERPRO**
Term	Definition
IPR036908	RlpA-like_sf
IPR009009	RlpA-like_DPBB
IPR007112	Expansin/allergen_DPBB_dom
IPR002963	Expansin

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009664	plant-type cell wall organization
cellular_component	GO:0005618	cell wall
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C024487.2	MELO3C024487.2	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C024487.2.1.exon.1	MELO3C024487.2.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C024487.2.1.CDS.1	MELO3C024487.2.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C024487.2.1	MELO3C024487.2.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002963	Expansin	PRINTS	PR01226	EXPANSIN	coord: 19..36 score: 71.48 coord: 36..49 score: 65.24
IPR007112	Expansin/pollen allergen, DPBB domain	SMART	SM00837	dpbb_1	coord: 1..51 e-value: 6.7E-11 score: 52.2
IPR007112	Expansin/pollen allergen, DPBB domain	PROSITE	PS50842	EXPANSIN_EG45	coord: 1..54 score: 10.491
IPR009009	RlpA-like protein, double-psi beta-barrel domain	PFAM	PF03330	DPBB_1	coord: 2..51 e-value: 4.4E-7 score: 30.0
IPR036908	RlpA-like domain superfamily	GENE3D	G3DSA:2.40.40.10		coord: 1..54 e-value: 1.8E-7 score: 33.0
IPR036908	RlpA-like domain superfamily	SUPERFAMILY	SSF50685	Barwin-like endoglucanases	coord: 2..53
None	No IPR available	PANTHER	PTHR31867	FAMILY NOT NAMED	coord: 1..53
None	No IPR available	PANTHER	PTHR31867:SF5	EXPANSIN-A9	coord: 1..53