MELO3C023782T2 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C023782T2
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Ubiquitin-protein ligase, putative
Location	chr6 : 17142850 .. 17146809 (+)
Sequence length	1027

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGATCTGTCCTCTGATTTTGGAAAAAGTGATGACACTGCTAATAAGCCAAAGTACAAAGTGCGGAAGAGGATTTCTAAGCAAGAAGACCCATCAAGATCAAGTAGCAGAAACTGCTTTGAGGAATCAACTTCCTCTGGTTTTTTTTAGCAATTAAGGTAAGATATATCATTCTTCTTTCCATCTTACATTTTGAATCTTATTCATTTTTGTCCATGTTGCTATACTTCACAGGACAAAGCCCACTTCTTTGCAATTAAGGTCTTAATCTGTGGTAATATATTGCGAATGGTTTAAATTTAATAAATATCTGTTCTAAATTACTAACATAACTAAGTAGTTTTCTTTAATTAAGTAATGTGATCTGGTTCTCCTATTCTAATTGTAGGTTGATCACATGATATCTTTTGATTAATCCTCCAACAATTTCTGTTATAAAATCCCAATAAATTGGTATGTTCTAATTTTATTGAGGTCCACCTTCTGACTTTATTGCTTAAAATGCTACGCAAATGTGTTAGGCTAACCAAAATTCACCTCCAACAAATGGCAACGACTAAGAAACGGCATGAGCTTGCCTTTAAGACAACAAATGCTTTGAAGTCTCTGGTAGTAAGTGTGTCAGTAGGTTGATGAGCAGCGGTTATAATCTTTAATAACTATCCTTGGGCACGACCTTTCTCTAGAGTGAATCACTTGTCACATGACTTGGGCCTTAAAAAGATCGAATCTGGCAACTAGTATGGATATTATCTTTTCAGGAAACAGAAGAATTAAGGAACACAAGCATCTTCAAATAAGTGCCCAATCCAAGCTCGCTAAGCCCCTTGCTTGAGCTCTGGTAAGAGCTTTGGAAATTACATCAGGATTCAATAGTTTCACATAGCCTGTGGTTGAGAGCTCACCAATACTGTTTTTAGCCCAACTAGAGTCCAAATAGGCGTGAAATTAATTTTACTAGCAGGAATACAGATTTGTAGGATAAAGACCCTTCAATTTTATAAAAAATTCTCTTCACAGAAGCCATATGACTAAGAGTAGGAATTAGTCATAGGATAAAGCATGTGTTGACAATTCGTAACAACTGTGGCAATAATATTGAGACGTGAGTCCGTGATGGAAGTAGAGTATTGAGATGGGCCACCGATACTTTCATTCTATGCATTTTAGCATCCTTTTAACTAAAAGACTTGGGAGAATTAGTTGTAGAACTTTCAATATGAAAAGGAGTTTGACATGATTTGTCTCGGATATAACAAAACAATGCAAGATGGTTAAGAGGAGGTATGCAGCGTGTGAGGAAAAGATTGTGAACCCTGATATTCAAATGAGTGTATACACTGACCAGTATATCATTTATAATGTTTTGCCACAAACATATATAAACTCAACACAATCATAATTCGAGTTTTCTCCGCATCGTCTTGGTTACATTTAGAATATAACATTTTGTATTGGTTCAAAATAAATTCTATCTTAAAATATCTGCTCTAGTGAACATTAGTGAGTGATTTTCTTTAATGTATTAATGTGAGTTTCTTCTACATTCTGATTGTGGTGTGGGTTGATGACTTGATATGGTCTGATCTGATTAATCAATAATCATCCAAGAACTTGTCAATTCCTTTAACTTGTTGCTAGGCTCTGACATAGGAATATTTTGCCTCAGCTAGGTAGAATTGGAAGCTCACTAATCCTGTCTTTTGAAATTTTGAGCTGCGGCTTGGTTTGCTTTTTTGCAAATTTTAATTGAACCCTGAGATAATTTCAGATTCTGTTCAAAGGTGTAATTTTTACCTTCTTTCGAGATTTTATTTTTTCATTTATTAGAATGTCGTATTCTTGTACACGGTCTCCTTTCTTGGGCAATCGGTTTCCTTCATCAGAATGAAATCCTATTTCTCTGTCTTTTTTGGCATATCACCACTTGAAAGAAAGAAGCATTTTACCCTAATAAAAAATTTATTATTTTGAACTTTTTTCCCTTCTTCACTGAGAACTTTTGCCCTCATTTTGTTTGGATAGCGTGGTAGCTCTTCAAGCTTGGCGAGAGACAAAAGAAAAGGTGAAAGTAGTAATCAGGACTCTACTGTTAAATCTTCAAGGAGACGGCACCTGCTTGTAAGTAATAACTCTAGCGAAGATCATAACAAGCCTGACATTTGGAATTTTGACCCGGAGCGGTATCATTTGGGAACTCATAATAGTCTTAAAGTTCCGTCTAGCCATTGGGCTGCTGAAACAGATATGGAAGTGGTAAACATTGGAGGAACATCTGATTGTGAACGGTTGTGTGATGAAAGGGGACTAGCAAGTATCAGGTTTGAAGGCATTGAAGCTTATGAGAACCAATCTACTTCCAACGATACAAACTTACTAGTTGACAATGCACCAAGAGTGCTACCGATAACTCCAGAAGATGAATTGCACAATATGAATGATTTGCAAAAGAACATTGAGGATCCAGTTATAGAACTCGATGCAAGCTTACCCCCAACTTCAACGGAGTTATCATGTGTCATCTGTTGGACAGATTTTAGTTCGACAAGGGGAGTTTTACCCTGTGGGCACCGATTTTGCTATTCATGCATTCAGAACTGGGCAGATCACATGGTAAAAGTTCTATTCAATTTCTATTCATAGAGATTCAAGGATCCAATTAAACCTTGTGATTTGTTTTTGCTTTTTGAGCTAAAACTACCATAAAAGATAGGACCTTGGGCAGTGAACTGTTCAATTTATTCAGCATATGAGAGTTAGATTTTCTTACTTCATTAACTAGGTTGCATTTTTTGCCTTGATGATTGGGACTAGAGAACTACTTATTTGAATTTTCCATCGTATTCATAATCTTCATATTTCTTAATGGCAGTTCCTTATATTTTGTAGTAATTGGATTATGTTTTGAACGTGCTAGTGATGATTGGTACTAGTTCTTCATTCAATACATCCGAAGTAAGAACTTCCAGACAAATAACATTGAGAAACACTATGTTGCCTCCATAAATTATTTGTACTTTTTCCAATTGTCTCTCTGTACTGCGAACTGTTTTTATTTTCTAATTCAAAGGTAAAATTAACTATCTAGTTCAGAATGAAATGAAATGTGTTTTAGGGATGATAAGATATTGCAGAAGTTCAGGTGACGATTGCTTGAGCAGCGATGAGATTTGCATGAATGTTAAACACCGGATATTTTAACTGCTTGTCATGTATGGTTGTATTGGGATTCTTGAACTATTAGGCAACATCACAGATCTGATTAAGAAAAATTAACCTGAAAGTTGTCTCTATAATTGTCCATACGTTTTGCTCTTTAGGCAAATTATGTGAACTCTAAATTTATTTATTTTTCCTCTAATCATTACTTGATGGAAAATCTAACATCACTTTCAAGAATTCATTGCCATCTCAACTTGATTAAAATCCTCAAATCACAAGATTATATATAACTAAACCAAATTATGCGGACTCCAAATTTACTTATTTTCCTCATTGCCAACTACTTTGAAACTCTGAGGCTACTAATGATTTTTGTTCTTGGAACTTGTTGCGTGAATTCTGTCATTCTGAATTGATTGATTTACTCAGTCATCAAAATGCTGTCAACGTTCTAATATGTACTATGAAGTTCAGAATCAGTTTCAAGGTCCTAATCTATTGGTCTCGTGTCTTGTAGGCTTTGAGCAGAAAAATCTCAACCTGCCCTTTGTGCAAAGCCAGTTTTCTGAGCATCACAAAGGTTGAAGATGCTGCCACCTCGGATCAGAAGATATACTCCCAAACCATTCCATGTGGACCGTCATTAGTGGATATTTACCTTCTATCTGATGAAAGAACTCTTAACAACGTTGTTCAGGTCACATTATTTTCAATGCTCAGTGTCGTTGCTTCGTGGTTTGTGTGTGTGTTGGGGGCGGGGAGGGGGAGCTGATGAAACTCTAGTATTCATTGTCAAGAA

mRNA sequence

AGGATCTGTCCTCTGATTTTGGAAAAAGTGATGACACTGCTAATAAGCCAAAGTACAAAGTGCGGAAGAGGATTTCTAAGCAAGAAGACCCATCAAGATCAAGTAGCAGAAACTGCTTTGAGGAATCAACTTCCTCTGGTTTTTTTTAGCAATTAAGCGTGGTAGCTCTTCAAGCTTGGCGAGAGACAAAAGAAAAGGTGAAAGTAGTAATCAGGACTCTACTGTTAAATCTTCAAGGAGACGGCACCTGCTTGTAAGTAATAACTCTAGCGAAGATCATAACAAGCCTGACATTTGGAATTTTGACCCGGAGCGGTATCATTTGGGAACTCATAATAGTCTTAAAGTTCCGTCTAGCCATTGGGCTGCTGAAACAGATATGGAAGTGGTAAACATTGGAGGAACATCTGATTGTGAACGGTTGTGTGATGAAAGGGGACTAGCAAGTATCAGGTTTGAAGGCATTGAAGCTTATGAGAACCAATCTACTTCCAACGATACAAACTTACTAGTTGACAATGCACCAAGAGTGCTACCGATAACTCCAGAAGATGAATTGCACAATATGAATGATTTGCAAAAGAACATTGAGGATCCAGTTATAGAACTCGATGCAAGCTTACCCCCAACTTCAACGGAGTTATCATGTGTCATCTGTTGGACAGATTTTAGTTCGACAAGGGGAGTTTTACCCTGTGGGCACCGATTTTGCTATTCATGCATTCAGAACTGGGCAGATCACATGGCTTTGAGCAGAAAAATCTCAACCTGCCCTTTGTGCAAAGCCAGTTTTCTGAGCATCACAAAGGTTGAAGATGCTGCCACCTCGGATCAGAAGATATACTCCCAAACCATTCCATGTGGACCGTCATTAGTGGATATTTACCTTCTATCTGATGAAAGAACTCTTAACAACGTTGTTCAGGTCACATTATTTTCAATGCTCAGTGTCGTTGCTTCGTGGTTTGTGTGTGTGTTGGGGGCGGGGAGGGGGAGCTGATGAAACTCTAGTATTCATTGTCAAGAA

Coding sequence (CDS)

ATGGAAGTGGTAAACATTGGAGGAACATCTGATTGTGAACGGTTGTGTGATGAAAGGGGACTAGCAAGTATCAGGTTTGAAGGCATTGAAGCTTATGAGAACCAATCTACTTCCAACGATACAAACTTACTAGTTGACAATGCACCAAGAGTGCTACCGATAACTCCAGAAGATGAATTGCACAATATGAATGATTTGCAAAAGAACATTGAGGATCCAGTTATAGAACTCGATGCAAGCTTACCCCCAACTTCAACGGAGTTATCATGTGTCATCTGTTGGACAGATTTTAGTTCGACAAGGGGAGTTTTACCCTGTGGGCACCGATTTTGCTATTCATGCATTCAGAACTGGGCAGATCACATGGCTTTGAGCAGAAAAATCTCAACCTGCCCTTTGTGCAAAGCCAGTTTTCTGAGCATCACAAAGGTTGAAGATGCTGCCACCTCGGATCAGAAGATATACTCCCAAACCATTCCATGTGGACCGTCATTAGTGGATATTTACCTTCTATCTGATGAAAGAACTCTTAACAACGTTGTTCAGGTCACATTATTTTCAATGCTCAGTGTCGTTGCTTCGTGGTTTGTGTGTGTGTTGGGGGCGGGGAGGGGGAGCTGA

Protein sequence

MEVVNIGGTSDCERLCDERGLASIRFEGIEAYENQSTSNDTNLLVDNAPRVLPITPEDELHNMNDLQKNIEDPVIELDASLPPTSTELSCVICWTDFSSTRGVLPCGHRFCYSCIQNWADHMALSRKISTCPLCKASFLSITKVEDAATSDQKIYSQTIPCGPSLVDIYLLSDERTLNNVVQVTLFSMLSVVASWFVCVLGAGRGS*

Homology

[Close]

BLAST of MELO3C023782T2 vs. TrEMBL
Match: A0A0A0L7F3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G271310 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 2.0e-92
Identity = 170/190 (89.47%), Postives = 179/190 (94.21%), Query Frame = 1


Query: 1   MEVVNIGGTSDCERLCDERGLASIRFEGIEAYENQSTSNDTNLLVDNAPRVLPITPEDEL 60
           +EVVNIGGTSD E+LCDERGLAS+RFEG+EA ENQSTS DTNLLVDNAPRVL IT EDEL
Sbjct: 303 IEVVNIGGTSDREQLCDERGLASVRFEGVEACENQSTSKDTNLLVDNAPRVLSITSEDEL 362

Query: 61  HNMNDLQKNIEDPVIELDASLPPTSTELSCVICWTDFSSTRGVLPCGHRFCYSCIQNWAD 120
           HNMNDLQKNIEDPVIELDASLP TSTELSCVICWTDFSSTRGVLPCGHRFCYSCIQNWAD
Sbjct: 363 HNMNDLQKNIEDPVIELDASLPSTSTELSCVICWTDFSSTRGVLPCGHRFCYSCIQNWAD 422

Query: 121 HMALSRKISTCPLCKASFLSITKVEDAATSDQKIYSQTIPCGPSLVDIYLLSDERTLNNV 180
           HMALSRKISTCPLCKASFLSITKVE AATSDQKIYSQTIPCG SL+DIYLLSDERTLNNV
Sbjct: 423 HMALSRKISTCPLCKASFLSITKVEYAATSDQKIYSQTIPCGSSLLDIYLLSDERTLNNV 482

Query: 181 VQVTLFSMLS 191
           VQ ++ ++ S
Sbjct: 483 VQPSVAAVCS 492

[Close]

BLAST of MELO3C023782T2 vs. TrEMBL
Match: W9RE81_9ROSA (BRCT domain-containing protein OS=Morus notabilis GN=L484_009688 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.3e-39
Identity = 87/165 (52.73%), Postives = 112/165 (67.88%), Query Frame = 1


Query: 19  RGLASIRFEGIEAYENQSTSNDTNLLVDNAPRVLPITPEDELHNM-NDLQKNIEDPVIEL 78
           +GL S+  +    +      N+ ++  +N    L  T ED   +  N  ++  +   I+ 
Sbjct: 307 KGLDSVEADVPSRFCASMDPNEPDVHAENGLMDLENTSEDGCSDAENSKEETTKGLEIKH 366

Query: 79  DASLPPTSTELSCVICWTDFSSTRGVLPCGHRFCYSCIQNWADHMALSRKISTCPLCKAS 138
           D+++P +STELSCVIC TDFSSTRGVLPCGHRFCYSCI++WADHMAL RKISTCPLCK S
Sbjct: 367 DSTIP-SSTELSCVICLTDFSSTRGVLPCGHRFCYSCIESWADHMALKRKISTCPLCKES 426

Query: 139 FLSITKVEDAATSDQKIYSQTIPCGPSLVDIYLLSDERTLNNVVQ 183
           F SI K ED AT  QKIYSQTIPCG S++D+++L D+ T N   Q
Sbjct: 427 FASIIKFEDTATDGQKIYSQTIPCGLSMMDMFILHDQETANMTAQ 470

[Close]

BLAST of MELO3C023782T2 vs. TrEMBL
Match: A0A061F8Z2_THECC (Zinc finger family protein / BRCT domain-containing protein, putative isoform 2 OS=Theobroma cacao GN=TCM_031901 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.7e-38
Identity = 92/160 (57.50%), Postives = 109/160 (68.12%), Query Frame = 1


Query: 27  EGIEAYENQSTSNDTNLLVDNAPRVLPITPEDELHNMNDLQKNIEDP-VIELDASLPPTS 86
           E I+ + +Q  S  + L V +AP V             D +K  +D   IEL AS  P S
Sbjct: 329 EEIKLWNHQLPSTSSTLPVKDAPSVFE---RPSPAGCFDAEKESQDVGQIEL-ASRLPNS 388

Query: 87  TELSCVICWTDFSSTRGVLPCGHRFCYSCIQNWADHMALSRKISTCPLCKASFLSITKVE 146
           TELSCVICWT+FS+TRGVLPCGHRFCYSCIQ+WADHM  SRK STCPLCKASF+SITKVE
Sbjct: 389 TELSCVICWTEFSATRGVLPCGHRFCYSCIQDWADHMISSRKTSTCPLCKASFMSITKVE 448

Query: 147 DAATSDQKIYSQTIPCGPSLVDIYLLSDERTLNNVVQVTL 186
           DAA  DQKI+SQTIP   S +D+ +L D+   +  VQV L
Sbjct: 449 DAAICDQKIFSQTIPRATSTMDVSILPDQERPSFGVQVAL 484

[Close]

BLAST of MELO3C023782T2 vs. TrEMBL
Match: V4S995_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011421mg PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.8e-38
Identity = 82/114 (71.93%), Postives = 92/114 (80.70%), Query Frame = 1


Query: 60  LHNMNDLQKNIEDPVIELDASLPPTSTELSCVICWTDFSSTRGVLPCGHRFCYSCIQNWA 119
           + N N + KN  D +  ++ S   TS ELSCVICWT+FSSTRGVL CGHRFCYSCIQNWA
Sbjct: 368 IENSNGMVKNT-DRIEHVNRS--STSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWA 427

Query: 120 DHMALSRKISTCPLCKASFLSITKVEDAATSDQKIYSQTIPCGPSLVDIYLLSD 174
           DHMA  RKISTCPLCKASF+SITKVEDAATSDQKIYSQTIPC  S  D+++L D
Sbjct: 428 DHMASVRKISTCPLCKASFMSITKVEDAATSDQKIYSQTIPCAWSTRDVFILPD 478

[Close]

BLAST of MELO3C023782T2 vs. TrEMBL
Match: A0A067EUW4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011171mg PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.8e-38
Identity = 82/114 (71.93%), Postives = 92/114 (80.70%), Query Frame = 1


Query: 60  LHNMNDLQKNIEDPVIELDASLPPTSTELSCVICWTDFSSTRGVLPCGHRFCYSCIQNWA 119
           + N N + KN  D +  ++ S   TS ELSCVICWT+FSSTRGVL CGHRFCYSCIQNWA
Sbjct: 316 IENSNGMVKNT-DRIEHVNRS--STSGELSCVICWTEFSSTRGVLACGHRFCYSCIQNWA 375

Query: 120 DHMALSRKISTCPLCKASFLSITKVEDAATSDQKIYSQTIPCGPSLVDIYLLSD 174
           DHMA  RKISTCPLCKASF+SITKVEDAATSDQKIYSQTIPC  S  D+++L D
Sbjct: 376 DHMASVRKISTCPLCKASFMSITKVEDAATSDQKIYSQTIPCAWSTRDVFILPD 426

[Close]

BLAST of MELO3C023782T2 vs. TAIR10
Match: AT1G67180.1 (AT1G67180.1 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein)

HSP 1 Score: 131.0 bits (328), Expect = 8.7e-31
Identity = 58/103 (56.31%), Postives = 78/103 (75.73%), Query Frame = 1


Query: 87  ELSCVICWTDFSSTRGVLPCGHRFCYSCIQNWADHMALSRKISTCPLCKASFLSITKVED 146
           ++SC+ICWT+FSS+RG+LPCGHRFCYSCIQ WAD +   RK +TCPLCK++F++ITK+ED
Sbjct: 297 QVSCIICWTEFSSSRGILPCGHRFCYSCIQKWADRLVSERKKTTCPLCKSNFITITKIED 356

Query: 147 AATSDQKIYSQTIPCGPSLVDIYLLSDE-----RTLNNVVQVT 185
           A +SDQKIYSQT+P   S  +I ++  E     +TLN + + +
Sbjct: 357 ADSSDQKIYSQTVPDLSSTNNILVVLPEEEEQRQTLNPLTRAS 399

[Close]

BLAST of MELO3C023782T2 vs. NCBI nr
Match: gi|659123316|ref|XP_008461601.1| (PREDICTED: uncharacterized protein LOC103500164 [Cucumis melo])

HSP 1 Score: 377.9 bits (969), Expect = 1.2e-101
Identity = 183/190 (96.32%), Postives = 187/190 (98.42%), Query Frame = 1


Query: 1   MEVVNIGGTSDCERLCDERGLASIRFEGIEAYENQSTSNDTNLLVDNAPRVLPITPEDEL 60
           MEVVNIGGTSDCERLCDERGLASIRFEGIEAYENQSTSNDTNLLVDNAPRVLPITPEDEL
Sbjct: 128 MEVVNIGGTSDCERLCDERGLASIRFEGIEAYENQSTSNDTNLLVDNAPRVLPITPEDEL 187

Query: 61  HNMNDLQKNIEDPVIELDASLPPTSTELSCVICWTDFSSTRGVLPCGHRFCYSCIQNWAD 120
           HNMNDLQKNIEDPVIELDASLPPTSTELSCVICWTDFSSTRGVLPCGHRFCYSCIQNWAD
Sbjct: 188 HNMNDLQKNIEDPVIELDASLPPTSTELSCVICWTDFSSTRGVLPCGHRFCYSCIQNWAD 247

Query: 121 HMALSRKISTCPLCKASFLSITKVEDAATSDQKIYSQTIPCGPSLVDIYLLSDERTLNNV 180
           HMALSRKISTCPLCKASFLSITKVEDAATSDQKIYSQTIPCGPSLVDIYLLSDERTLNNV
Sbjct: 248 HMALSRKISTCPLCKASFLSITKVEDAATSDQKIYSQTIPCGPSLVDIYLLSDERTLNNV 307

Query: 181 VQVTLFSMLS 191
           VQ ++ ++ S
Sbjct: 308 VQPSVAAVCS 317

[Close]

BLAST of MELO3C023782T2 vs. NCBI nr
Match: gi|778680653|ref|XP_011651366.1| (PREDICTED: regulator of Ty1 transposition protein 107 [Cucumis sativus])

HSP 1 Score: 346.7 bits (888), Expect = 2.9e-92
Identity = 170/190 (89.47%), Postives = 179/190 (94.21%), Query Frame = 1


Query: 1   MEVVNIGGTSDCERLCDERGLASIRFEGIEAYENQSTSNDTNLLVDNAPRVLPITPEDEL 60
           +EVVNIGGTSD E+LCDERGLAS+RFEG+EA ENQSTS DTNLLVDNAPRVL IT EDEL
Sbjct: 303 IEVVNIGGTSDREQLCDERGLASVRFEGVEACENQSTSKDTNLLVDNAPRVLSITSEDEL 362

Query: 61  HNMNDLQKNIEDPVIELDASLPPTSTELSCVICWTDFSSTRGVLPCGHRFCYSCIQNWAD 120
           HNMNDLQKNIEDPVIELDASLP TSTELSCVICWTDFSSTRGVLPCGHRFCYSCIQNWAD
Sbjct: 363 HNMNDLQKNIEDPVIELDASLPSTSTELSCVICWTDFSSTRGVLPCGHRFCYSCIQNWAD 422

Query: 121 HMALSRKISTCPLCKASFLSITKVEDAATSDQKIYSQTIPCGPSLVDIYLLSDERTLNNV 180
           HMALSRKISTCPLCKASFLSITKVE AATSDQKIYSQTIPCG SL+DIYLLSDERTLNNV
Sbjct: 423 HMALSRKISTCPLCKASFLSITKVEYAATSDQKIYSQTIPCGSSLLDIYLLSDERTLNNV 482

Query: 181 VQVTLFSMLS 191
           VQ ++ ++ S
Sbjct: 483 VQPSVAAVCS 492

[Close]

BLAST of MELO3C023782T2 vs. NCBI nr
Match: gi|1009127004|ref|XP_015880463.1| (PREDICTED: uncharacterized protein LOC107416489 [Ziziphus jujuba])

HSP 1 Score: 176.0 bits (445), Expect = 6.7e-41
Identity = 92/159 (57.86%), Postives = 111/159 (69.81%), Query Frame = 1


Query: 26  FEGIEAYENQS-----TSNDTNLLVDNAPRVLPITPEDELHNMNDLQKNIEDPV-IELDA 85
           +EG+E  E+ +     TS D N+  D+A   L  T ++   N+ + ++ I     IE + 
Sbjct: 302 YEGLEDAEDGNHNDLCTSVDLNVQSDDALHGLENTSQNGCCNVENSKEEIRKGAEIEHET 361

Query: 86  SLPPTSTELSCVICWTDFSSTRGVLPCGHRFCYSCIQNWADHMALSRKISTCPLCKASFL 145
             P  STELSCVICWTDFS  RGVLPCGHRFCYSCIQNWAD MA  RK+STCPLCKA F+
Sbjct: 362 KFP--STELSCVICWTDFSPIRGVLPCGHRFCYSCIQNWADTMASKRKVSTCPLCKARFV 421

Query: 146 SITKVEDAATSDQKIYSQTIPCGPSLVDIYLLSDERTLN 179
           SITK EDAAT DQKIYSQTIPCGPS +D+++L DE   N
Sbjct: 422 SITKFEDAATLDQKIYSQTIPCGPSTMDMFILGDEEMHN 458

[Close]

BLAST of MELO3C023782T2 vs. NCBI nr
Match: gi|703115545|ref|XP_010100918.1| (BRCT domain-containing protein [Morus notabilis])

HSP 1 Score: 169.9 bits (429), Expect = 4.8e-39
Identity = 87/165 (52.73%), Postives = 112/165 (67.88%), Query Frame = 1


Query: 19  RGLASIRFEGIEAYENQSTSNDTNLLVDNAPRVLPITPEDELHNM-NDLQKNIEDPVIEL 78
           +GL S+  +    +      N+ ++  +N    L  T ED   +  N  ++  +   I+ 
Sbjct: 307 KGLDSVEADVPSRFCASMDPNEPDVHAENGLMDLENTSEDGCSDAENSKEETTKGLEIKH 366

Query: 79  DASLPPTSTELSCVICWTDFSSTRGVLPCGHRFCYSCIQNWADHMALSRKISTCPLCKAS 138
           D+++P +STELSCVIC TDFSSTRGVLPCGHRFCYSCI++WADHMAL RKISTCPLCK S
Sbjct: 367 DSTIP-SSTELSCVICLTDFSSTRGVLPCGHRFCYSCIESWADHMALKRKISTCPLCKES 426

Query: 139 FLSITKVEDAATSDQKIYSQTIPCGPSLVDIYLLSDERTLNNVVQ 183
           F SI K ED AT  QKIYSQTIPCG S++D+++L D+ T N   Q
Sbjct: 427 FASIIKFEDTATDGQKIYSQTIPCGLSMMDMFILHDQETANMTAQ 470

[Close]

BLAST of MELO3C023782T2 vs. NCBI nr
Match: gi|719967516|ref|XP_010262109.1| (PREDICTED: uncharacterized protein LOC104600707 [Nelumbo nucifera])

HSP 1 Score: 168.3 bits (425), Expect = 1.4e-38
Identity = 88/166 (53.01%), Postives = 109/166 (65.66%), Query Frame = 1


Query: 29  IEAYENQSTSND---TNLLVDNAPRVLPITPEDELHNMNDLQKNIEDP---VIELDASLP 88
           +E  E+ S  ND   +N L      VLP       +   D++KN+ +    V+  +    
Sbjct: 312 LENLEDISELNDMDVSNSLDRVRELVLPTQERTSENVCPDIEKNLNEEFEDVLSGETGEL 371

Query: 89  PTSTELSCVICWTDFSSTRGVLPCGHRFCYSCIQNWADHMALSRKISTCPLCKASFLSIT 148
           PTST+LSCVICWTDFSSTRGVLPCGHRFCYSCIQ+WADHM   RK+STCPLCKA+F+SIT
Sbjct: 372 PTSTDLSCVICWTDFSSTRGVLPCGHRFCYSCIQSWADHMVSRRKVSTCPLCKATFVSIT 431

Query: 149 KVEDAATSDQKIYSQTIPCGPSLVDIYLLSDERTLNNVVQVTLFSM 189
           KV+DAA+SDQKIYSQTIP      D++L  D    N   Q  + S+
Sbjct: 432 KVDDAASSDQKIYSQTIPYASGATDVFLYPDREMSNFGAQPLVVSV 477

The following BLAST results are available for this feature:

BLAST of MELO3C023782T2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7F3_CUCSA	2.0e-92	89.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G271310 PE=4 SV=1	[more]
W9RE81_9ROSA	3.3e-39	52.73	BRCT domain-containing protein OS=Morus notabilis GN=L484_009688 PE=4 SV=1	[more]
A0A061F8Z2_THECC	1.7e-38	57.50	Zinc finger family protein / BRCT domain-containing protein, putative isoform 2 ...	[more]
V4S995_9ROSI	2.8e-38	71.93	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011421mg PE=4 SV=1	[more]
A0A067EUW4_CITSI	2.8e-38	71.93	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g011171mg PE=4 SV=1	[more]

BLAST of MELO3C023782T2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67180.1	8.7e-31	56.31	zinc finger (C3HC4-type RING finger) family protein / BRCT domain-co...	[more]

BLAST of MELO3C023782T2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659123316\|ref\|XP_008461601.1\|	1.2e-101	96.32	PREDICTED: uncharacterized protein LOC103500164 [Cucumis melo]	[more]
gi\|778680653\|ref\|XP_011651366.1\|	2.9e-92	89.47	PREDICTED: regulator of Ty1 transposition protein 107 [Cucumis sativus]	[more]
gi\|1009127004\|ref\|XP_015880463.1\|	6.7e-41	57.86	PREDICTED: uncharacterized protein LOC107416489 [Ziziphus jujuba]	[more]
gi\|703115545\|ref\|XP_010100918.1\|	4.8e-39	52.73	BRCT domain-containing protein [Morus notabilis]	[more]
gi\|719967516\|ref\|XP_010262109.1\|	1.4e-38	53.01	PREDICTED: uncharacterized protein LOC104600707 [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048449	floral organ formation
biological_process	GO:0048438	floral whorl development
biological_process	GO:0008152	metabolic process
biological_process	GO:0048827	phyllome development
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016874	ligase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C023782	MELO3C023782	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C023782T2	MELO3C023782T2-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C023782T2.cds1	MELO3C023782T2.cds1	CDS
MELO3C023782T2.cds2	MELO3C023782T2.cds2	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 89..135 score: 1.1
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 90..134 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 90..135 score: 13
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 86..143 score: 6.4
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 106..115 scor
None	No IPR available	PANTHER	PTHR13561	DNA REPLICATION REGULATOR DPB11-RELATED	coord: 24..182 score: 7.4
None	No IPR available	PANTHER	PTHR13561:SF26	F5A8.9 PROTEIN	coord: 24..182 score: 7.4
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 89..143 score: 2.94