MELO3C023611T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C023611T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionUrease subunit alpha
Locationchr1 : 31856412 .. 31856822 (+)
Sequence length342
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGCTTGTTTGAGCAAAAATAAGAAGACTTTACCTTGAATTTCTTCCACCTCTGTACCTTCACCTCCAGATCCCACCTCTTCTAACGGTTGCACCAAACCCATCATTCCAATTTGTCAGCCTCCTACCACTGATGTGCAACTTAAGAACTGCAACAAAACAGGGGAGGAAAATGGTGAGAGGAAAGAAGAAAGAAGTGAGTACCCTGTGAAGAAGGAGGTTTTTGTGATTAAGCACAGAAAAAGCCATGATGGAAGAGATAAGAATGGGGGTTCTCTTGTTCCATCTCAAGAGGGGAATGGTCATGTTTTCTCTGCTGGTACTCCTACTGTGTCTTCTTCTTCCTGTGAAATTTTGGAGTCTGGAGCTATGGGGGAAAATTTGAAGGTGGGTTTGGTCCGAACTTAG

mRNA sequence

ATGGATCCCACCTCTTCTAACGGTTGCACCAAACCCATCATTCCAATTTGTCAGCCTCCTACCACTGATGTGCAACTTAAGAACTGCAACAAAACAGGGGAGGAAAATGGTGAGAGGAAAGAAGAAAGAAGTGAGTACCCTGTGAAGAAGGAGGTTTTTGTGATTAAGCACAGAAAAAGCCATGATGGAAGAGATAAGAATGGGGGTTCTCTTGTTCCATCTCAAGAGGGGAATGGTCATGTTTTCTCTGCTGGTACTCCTACTGTGTCTTCTTCTTCCTGTGAAATTTTGGAGTCTGGAGCTATGGGGGAAAATTTGAAGGTGGGTTTGGTCCGAACTTAG

Coding sequence (CDS)

ATGGATCCCACCTCTTCTAACGGTTGCACCAAACCCATCATTCCAATTTGTCAGCCTCCTACCACTGATGTGCAACTTAAGAACTGCAACAAAACAGGGGAGGAAAATGGTGAGAGGAAAGAAGAAAGAAGTGAGTACCCTGTGAAGAAGGAGGTTTTTGTGATTAAGCACAGAAAAAGCCATGATGGAAGAGATAAGAATGGGGGTTCTCTTGTTCCATCTCAAGAGGGGAATGGTCATGTTTTCTCTGCTGGTACTCCTACTGTGTCTTCTTCTTCCTGTGAAATTTTGGAGTCTGGAGCTATGGGGGAAAATTTGAAGGTGGGTTTGGTCCGAACTTAG

Protein sequence

MDPTSSNGCTKPIIPICQPPTTDVQLKNCNKTGEENGERKEERSEYPVKKEVFVIKHRKSHDGRDKNGGSLVPSQEGNGHVFSAGTPTVSSSSCEILESGAMGENLKVGLVRT*
Homology
[Close]
BLAST of MELO3C023611T1 vs. TrEMBL
Match: A0A0A0KN73_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G429970 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.9e-52
Identity = 103/112 (91.96%), Postives = 105/112 (93.75%), Query Frame = 1 

Query: 2   DPTSSNGCTKPIIPICQPPTTDVQLKNCNKTGEENGERKEERSEYPVKKEVFVIKHRKSH 61
           DPTSSNGCTKPIIPI QPPTTDV LK CN TGEENGERKEERSEYPVKKEVFVIKHRKSH
Sbjct: 25  DPTSSNGCTKPIIPISQPPTTDVPLKTCNITGEENGERKEERSEYPVKKEVFVIKHRKSH 84

Query: 62  DGRDKNGGSLVPSQEGNGHVFSAGTPTVSSSSCEILESGAMGENLKVGLVRT 114
           DGRDKNGGSL+PSQ GNGHVFSA TPTVSSSSCEI ESGA+GENLKVGLVRT
Sbjct: 85  DGRDKNGGSLLPSQVGNGHVFSAATPTVSSSSCEIFESGAVGENLKVGLVRT 136

[Close]
BLAST of MELO3C023611T1 vs. NCBI nr
Match: gi|659126417|ref|XP_008463173.1| (PREDICTED: micronuclear linker histone polyprotein [Cucumis melo])

HSP 1 Score: 219.2 bits (557), Expect = 3.8e-54
Identity = 105/112 (93.75%), Postives = 108/112 (96.43%), Query Frame = 1 

Query: 2   DPTSSNGCTKPIIPICQPPTTDVQLKNCNKTGEENGERKEERSEYPVKKEVFVIKHRKSH 61
           DPTSSN CTKPIIPI QPPTTDVQLK CNKTGEENGERKEERSEYPVKKEVFVIKHRKSH
Sbjct: 83  DPTSSNVCTKPIIPISQPPTTDVQLKTCNKTGEENGERKEERSEYPVKKEVFVIKHRKSH 142

Query: 62  DGRDKNGGSLVPSQEGNGHVFSAGTPTVSSSSCEILESGAMGENLKVGLVRT 114
           DGRDKNGGSLVPSQEGNGH+FSA TPTVSSSSCEILESGA+GEN+KVGLVRT
Sbjct: 143 DGRDKNGGSLVPSQEGNGHIFSAATPTVSSSSCEILESGAVGENMKVGLVRT 194

[Close]
BLAST of MELO3C023611T1 vs. NCBI nr
Match: gi|449445184|ref|XP_004140353.1| (PREDICTED: uncharacterized protein At1g65710 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 2.7e-52
Identity = 103/112 (91.96%), Postives = 105/112 (93.75%), Query Frame = 1 

Query: 2   DPTSSNGCTKPIIPICQPPTTDVQLKNCNKTGEENGERKEERSEYPVKKEVFVIKHRKSH 61
           DPTSSNGCTKPIIPI QPPTTDV LK CN TGEENGERKEERSEYPVKKEVFVIKHRKSH
Sbjct: 25  DPTSSNGCTKPIIPISQPPTTDVPLKTCNITGEENGERKEERSEYPVKKEVFVIKHRKSH 84

Query: 62  DGRDKNGGSLVPSQEGNGHVFSAGTPTVSSSSCEILESGAMGENLKVGLVRT 114
           DGRDKNGGSL+PSQ GNGHVFSA TPTVSSSSCEI ESGA+GENLKVGLVRT
Sbjct: 85  DGRDKNGGSLLPSQVGNGHVFSAATPTVSSSSCEIFESGAVGENLKVGLVRT 136

The following BLAST results are available for this feature:
BLAST of MELO3C023611T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KN73_CUCSA1.9e-5291.96Uncharacterized protein OS=Cucumis sativus GN=Csa_5G429970 PE=4 SV=1[more]
BLAST of MELO3C023611T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659126417|ref|XP_008463173.1|3.8e-5493.75PREDICTED: micronuclear linker histone polyprotein [Cucumis melo][more]
gi|449445184|ref|XP_004140353.1|2.7e-5291.96PREDICTED: uncharacterized protein At1g65710 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C023611MELO3C023611gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C023611T1MELO3C023611T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C023611T1.cds1MELO3C023611T1.cds1CDS
MELO3C023611T1.cds2MELO3C023611T1.cds2CDS