MELO3C023297.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C023297.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionChloride channel protein
Locationchr11 : 1045251 .. 1045496 (+)
Sequence length159
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATGTGCGTCATCATGGTTGAAATTTCAAACAATTTGAAAATTTTACCTCTCATCATGCTTGTACTTCTGATGTCCAAGGTAAGTTAACAAATTGAAAATTGAAGTTTTAACCGTTCAACAAGTTTATTTCCACGTGAGAGTGGGTTATGTATATAATCACTTCAGGCTGTTGGTGATGCCTTTAATGAAGGCCTGTATGAAGAGCAAGCCCAATTGAAGGGTATTCCATTACTGGAATGA

mRNA sequence

ATGGGTATGTGCGTCATCATGGTTGAAATTTCAAACAATTTGAAAATTTTACCTCTCATCATGCTTGTACTTCTGATGTCCAAGGCTGTTGGTGATGCCTTTAATGAAGGCCTGTATGAAGAGCAAGCCCAATTGAAGGGTATTCCATTACTGGAATGA

Coding sequence (CDS)

ATGGGTATGTGCGTCATCATGGTTGAAATTTCAAACAATTTGAAAATTTTACCTCTCATCATGCTTGTACTTCTGATGTCCAAGGCTGTTGGTGATGCCTTTAATGAAGGCCTGTATGAAGAGCAAGCCCAATTGAAGGGTATTCCATTACTGGAATGA

Protein sequence

MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE
Homology
[Close]
BLAST of MELO3C023297.2.1 vs. NCBI nr
Match: KGN48017.1 (hypothetical protein Csa_6G425060 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 4.8e-16
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEISNNLK LPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE
Sbjct: 522 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]
BLAST of MELO3C023297.2.1 vs. NCBI nr
Match: XP_008449563.1 (PREDICTED: chloride channel protein CLC-d [Cucumis melo])

HSP 1 Score: 92.4 bits (228), Expect = 4.8e-16
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEISNNLK LPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE
Sbjct: 522 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]
BLAST of MELO3C023297.2.1 vs. NCBI nr
Match: XP_011657577.1 (PREDICTED: chloride channel protein CLC-d [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 4.8e-16
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEISNNLK LPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE
Sbjct: 522 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]
BLAST of MELO3C023297.2.1 vs. NCBI nr
Match: XP_022959118.1 (chloride channel protein CLC-d isoform X2 [Cucurbita moschata])

HSP 1 Score: 92.4 bits (228), Expect = 4.8e-16
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEISNNLK LPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE
Sbjct: 522 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]
BLAST of MELO3C023297.2.1 vs. NCBI nr
Match: XP_022959117.1 (chloride channel protein CLC-d isoform X1 [Cucurbita moschata])

HSP 1 Score: 92.4 bits (228), Expect = 4.8e-16
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEISNNLK LPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE
Sbjct: 530 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 581

[Close]
BLAST of MELO3C023297.2.1 vs. TAIR10
Match: AT5G26240.1 (chloride channel D)

HSP 1 Score: 86.3 bits (212), Expect = 6.2e-18
Identity = 44/52 (84.62%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEI+NNLK+LPLIMLVLL+SKAVGDAFNEGLYE QA+LKGIPLLE
Sbjct: 524 VSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEVQARLKGIPLLE 575

[Close]
BLAST of MELO3C023297.2.1 vs. TAIR10
Match: AT5G49890.1 (chloride channel C)

HSP 1 Score: 62.0 bits (149), Expect = 1.2e-10
Identity = 27/52 (51.92%), Postives = 42/52 (80.77%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVI++E++NNL +LPL+MLVLL+SK V D FN G+Y++   +KG+P +E
Sbjct: 536 VSLCVILLELTNNLLMLPLVMLVLLISKTVADCFNRGVYDQIVTMKGLPYME 587

[Close]
BLAST of MELO3C023297.2.1 vs. TAIR10
Match: AT3G27170.1 (chloride channel B)

HSP 1 Score: 57.8 bits (138), Expect = 2.4e-09
Identity = 26/52 (50.00%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVI +E++NNL +LP+ M+VLL++K VGD+FN  +Y+    LKG+P LE
Sbjct: 525 VSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLE 576

[Close]
BLAST of MELO3C023297.2.1 vs. TAIR10
Match: AT5G40890.1 (chloride channel A)

HSP 1 Score: 57.4 bits (137), Expect = 3.1e-09
Identity = 27/52 (51.92%), Postives = 39/52 (75.00%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVI +E++NNL +LP+ M VLL++K VGD+FN  +YE    LKG+P LE
Sbjct: 526 VSLCVIFLELTNNLLLLPITMFVLLIAKTVGDSFNLSIYEIILHLKGLPFLE 577

[Close]
BLAST of MELO3C023297.2.1 vs. Swiss-Prot
Match: sp|P92943|CLCD_ARATH (Chloride channel protein CLC-d OS=Arabidopsis thaliana OX=3702 GN=CLC-D PE=1 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-16
Identity = 44/52 (84.62%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEI+NNLK+LPLIMLVLL+SKAVGDAFNEGLYE QA+LKGIPLLE
Sbjct: 524 VSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEVQARLKGIPLLE 575

[Close]
BLAST of MELO3C023297.2.1 vs. Swiss-Prot
Match: sp|Q96282|CLCC_ARATH (Chloride channel protein CLC-c OS=Arabidopsis thaliana OX=3702 GN=CLC-C PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.3e-09
Identity = 27/52 (51.92%), Postives = 42/52 (80.77%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVI++E++NNL +LPL+MLVLL+SK V D FN G+Y++   +KG+P +E
Sbjct: 536 VSLCVILLELTNNLLMLPLVMLVLLISKTVADCFNRGVYDQIVTMKGLPYME 587

[Close]
BLAST of MELO3C023297.2.1 vs. Swiss-Prot
Match: sp|P92942|CLCB_ARATH (Chloride channel protein CLC-b OS=Arabidopsis thaliana OX=3702 GN=CLC-B PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.3e-08
Identity = 26/52 (50.00%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVI +E++NNL +LP+ M+VLL++K VGD+FN  +Y+    LKG+P LE
Sbjct: 525 VSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLE 576

[Close]
BLAST of MELO3C023297.2.1 vs. Swiss-Prot
Match: sp|P92941|CLCA_ARATH (Chloride channel protein CLC-a OS=Arabidopsis thaliana OX=3702 GN=CLC-A PE=1 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 5.6e-08
Identity = 27/52 (51.92%), Postives = 39/52 (75.00%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVI +E++NNL +LP+ M VLL++K VGD+FN  +YE    LKG+P LE
Sbjct: 526 VSLCVIFLELTNNLLLLPITMFVLLIAKTVGDSFNLSIYEIILHLKGLPFLE 577

[Close]
BLAST of MELO3C023297.2.1 vs. TrEMBL
Match: tr|A0A1S3BMB3|A0A1S3BMB3_CUCME (Chloride channel protein OS=Cucumis melo OX=3656 GN=LOC103491408 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.1e-16
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEISNNLK LPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE
Sbjct: 522 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]
BLAST of MELO3C023297.2.1 vs. TrEMBL
Match: tr|A0A0A0KI42|A0A0A0KI42_CUCSA (Chloride channel protein OS=Cucumis sativus OX=3659 GN=Csa_6G425060 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.1e-16
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEISNNLK LPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE
Sbjct: 522 VSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]
BLAST of MELO3C023297.2.1 vs. TrEMBL
Match: tr|A0A2N9H2I9|A0A2N9H2I9_FAGSY (Chloride channel protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36619 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.7e-15
Identity = 45/52 (86.54%), Postives = 51/52 (98.08%), Query Frame = 0 

Query: 1   MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
           + +CVIMVEI+NNLK+LPLIMLVLL+SKAVGDAFNEGLYEEQAQL+GIPLLE
Sbjct: 589 VSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEEQAQLRGIPLLE 640

[Close]
BLAST of MELO3C023297.2.1 vs. TrEMBL
Match: tr|A0A2P4LVL3|A0A2P4LVL3_QUESU (L-ascorbate oxidase OS=Quercus suber OX=58331 GN=CFP56_42428 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.7e-15
Identity = 45/52 (86.54%), Postives = 51/52 (98.08%), Query Frame = 0 

Query: 1    MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
            + +CVIMVEI+NNLK+LPLIMLVLL+SKAVGDAFNEGLYEEQAQL+GIPLLE
Sbjct: 1120 VSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEEQAQLRGIPLLE 1171

[Close]
BLAST of MELO3C023297.2.1 vs. TrEMBL
Match: tr|A0A2P4LW82|A0A2P4LW82_QUESU (Chloride channel protein clc-d OS=Quercus suber OX=58331 GN=CFP56_42428 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.7e-15
Identity = 45/52 (86.54%), Postives = 51/52 (98.08%), Query Frame = 0 

Query: 1    MGMCVIMVEISNNLKILPLIMLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 53
            + +CVIMVEI+NNLK+LPLIMLVLL+SKAVGDAFNEGLYEEQAQL+GIPLLE
Sbjct: 1120 VSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEEQAQLRGIPLLE 1171

The following BLAST results are available for this feature:
BLAST of MELO3C023297.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48017.14.8e-1692.31hypothetical protein Csa_6G425060 [Cucumis sativus][more]
XP_008449563.14.8e-1692.31PREDICTED: chloride channel protein CLC-d [Cucumis melo][more]
XP_011657577.14.8e-1692.31PREDICTED: chloride channel protein CLC-d [Cucumis sativus][more]
XP_022959118.14.8e-1692.31chloride channel protein CLC-d isoform X2 [Cucurbita moschata][more]
XP_022959117.14.8e-1692.31chloride channel protein CLC-d isoform X1 [Cucurbita moschata][more]
BLAST of MELO3C023297.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G26240.16.2e-1884.62chloride channel D[more]
AT5G49890.11.2e-1051.92chloride channel C[more]
AT3G27170.12.4e-0950.00chloride channel B[more]
AT5G40890.13.1e-0951.92chloride channel A[more]
BLAST of MELO3C023297.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P92943|CLCD_ARATH1.1e-1684.62Chloride channel protein CLC-d OS=Arabidopsis thaliana OX=3702 GN=CLC-D PE=1 SV=... [more]
sp|Q96282|CLCC_ARATH2.3e-0951.92Chloride channel protein CLC-c OS=Arabidopsis thaliana OX=3702 GN=CLC-C PE=1 SV=... [more]
sp|P92942|CLCB_ARATH4.3e-0850.00Chloride channel protein CLC-b OS=Arabidopsis thaliana OX=3702 GN=CLC-B PE=1 SV=... [more]
sp|P92941|CLCA_ARATH5.6e-0851.92Chloride channel protein CLC-a OS=Arabidopsis thaliana OX=3702 GN=CLC-A PE=1 SV=... [more]
BLAST of MELO3C023297.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BMB3|A0A1S3BMB3_CUCME3.1e-1692.31Chloride channel protein OS=Cucumis melo OX=3656 GN=LOC103491408 PE=3 SV=1[more]
tr|A0A0A0KI42|A0A0A0KI42_CUCSA3.1e-1692.31Chloride channel protein OS=Cucumis sativus OX=3659 GN=Csa_6G425060 PE=3 SV=1[more]
tr|A0A2N9H2I9|A0A2N9H2I9_FAGSY2.7e-1586.54Chloride channel protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36619 PE=3 SV=1[more]
tr|A0A2P4LVL3|A0A2P4LVL3_QUESU2.7e-1586.54L-ascorbate oxidase OS=Quercus suber OX=58331 GN=CFP56_42428 PE=3 SV=1[more]
tr|A0A2P4LW82|A0A2P4LW82_QUESU2.7e-1586.54Chloride channel protein clc-d OS=Quercus suber OX=58331 GN=CFP56_42428 PE=3 SV=... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR014743Cl-channel_core
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006821 chloride transport
biological_process GO:0034220 ion transmembrane transport
biological_process GO:0006811 ion transport
biological_process GO:1903959 regulation of anion transmembrane transport
biological_process GO:0055085 transmembrane transport
biological_process GO:0006810 transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005247 voltage-gated chloride channel activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C023297.2MELO3C023297.2gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C023297.2.1.CDS.1MELO3C023297.2.1.CDS.1CDS
MELO3C023297.2.1.CDS.2MELO3C023297.2.1.CDS.2CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C023297.2.1.exon.1MELO3C023297.2.1.exon.1exon
MELO3C023297.2.1.exon.2MELO3C023297.2.1.exon.2exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C023297.2.1MELO3C023297.2.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014743Chloride channel, coreGENE3DG3DSA:1.10.3080.10coord: 1..52
e-value: 1.1E-10
score: 43.0
IPR014743Chloride channel, coreSUPERFAMILYSSF81340Clc chloride channelcoord: 2..51
NoneNo IPR availablePANTHERPTHR11689CHLORIDE CHANNELcoord: 2..52
NoneNo IPR availablePANTHERPTHR11689:SF105CHLORIDE CHANNEL PROTEIN CLC-Ccoord: 2..52