MELO3C023215T2 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C023215T2
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionEukaryotic translation initiation factor 6
Locationchr11 : 303452 .. 306830 (+)
Sequence length1236
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATCACAGCAACAATAATTATTTCTATATTTGATTAAGATTGGTTATAGATTTTGTCTATAAATGTGGGGTTTACAGTTTATTTTGTAAATTAGGTTTCAATTGGGATCTTTTTGACACAGCGGTTGTGAATTTCTTCTTCATCTTCATTCTTCAACCTTTTCATGGCGACCAGTAAGTTTATGGTTTTCATTTTCTTTTTTTGGTTTCTTCTTCTCCTATTTATATATTCTTTTGTTTGTTCTCTTTAGGGCTTATGTTTGAAAACTCATGTGAAATTGGAGTTTTCTCCAAGCTCACTAATTCGTACTGTCTGGTTGCAATTGGTGGTTCTGAAGATTTCTATAGGTTTTTCCTTTTCCCTTTACTCATTGTATCTTGTGAACTTAACCAATTTCTCACTAAGGATATTTTTTTTTTCATGTTTAGTACCTTTGAAGCTGAATTAGGTGCTGTCATTCCCGTGGTTAAAACATCTATTCATGGCACTCGCATTATTGGTCGTCTATGTGCTGGTAAAACTAAAACTCACTTCTTTTTTAGTTTTAATTATTATTTTCTTAAGTTAGGGTAGCCATTAATAACGTTAGACCCAATTTATTCACATGACATTGTTTTTCTTTTAGGAAATAAAAATGGGCTTCTTCTACCACACACCACTACTGACCAAGGTAATCCTCTTTTCTATCTTTCTTGTCATATTGCACTTTTAATTTCATAGTTGGGGTACAAATGTCTTTTAATTTCTGTGTATCTTTAAGACTAAGAGAGTATTGAATCGTAGTATGTAATTGAAAACAATATTTGAGATTTTGAATTGTGGACTTTCATCATCAAAACCTATATATGCTCATTTTGGACTAAAGGATTGGATTTTATGCATTTTTTGAACACATTTTGCATACATCTCTTTCTTGGTTGGTCTTTATTCACTTTTAAGTTCTGATTGAATGTTTGTCATCAGAAAAACAAATCTAATTTTCCTTTTTTTTTTTTGTGTACTAATACTGTCTGACACTGGTTATTTACATGAATAGTTATCTCCTTGGTCAGGAGTTTCAAACTATTGTCATGTACGATTGCATTGTGAGATTGAGTTACTAAATTGATGTATTTTATTATTTTACTTGTATATATTAGGCTTTGCCTATCTCCTTTATTCAATTAATTAAAAAAATTCCAGATTTGAATCTTTGTCTTACGCAAGCTTCAAGACTCATCATAAATTCTTTATGTCTATTTGAAGTTTCTTATGTAATTTTAGTGGTTACTACCAAATTGATAAGTGTATTCTATTTTTCTTTGAAATATCTAATTGCATGACCAATTGGAGTAGTCTTTTTCTTAATTCATTGGATAGGAAAGATACTCCCTTTTTGTAATTTCTATCTCTTTGGTAATGTTACTATTTCCTATAAAAAGATCATAGAGGTCGGTTTCTTTTGCTTGCTGGTGTGTGTGGGTGTTATGGGTTTTGTGGGATGAGGGACATAAAAGGGTGTCTGGGGGAGTGGAGGGGGACCTGGTTCCTTGTTCGTTTTCATTTTTCTCTCTCTGCTTCAATTTCAAAGACTGTTTGTAATTATTTTTTAGCAATGAATTTGCAGAGTTGGAGCCCCTTTAGAAGGGTGTCTTTCCTTTTTGTGGGCTTTGGTTTTTTGTATGCCTATGCATCTTTCATTTTTTTTCCTAAATGAAAGTAATTATTTCATCTAAAAAAGTCATAGAGTTGTTAATCTTTTGTGGGCAGTAAGGATGAGAAATGTATATATGTTTTTTTTTAAAAAAATTGAAAAATGATGAAAATTGAAGTACCCACATGCTTATGAATATAACAACTTCATCATTATGAAATAATGATTTAATGTCTTGCACATGATTGCTCGAACTTTTAAGCATTGCCATTATACGTGTGTGTTTGCACGGAGTTCTTCTGGTTCTTTAATTTTGTGTTATTTGGTGTTGATGTGTATTGCCAAATTATTTAATTGACATTCTGTTCCTATTCTTTGCATTTGAAGAACTCCAGCACTTGAGGAACAGCCTACCTGACCAAGTTGTTGTTCAACGTATACAAGAGAGATTGTCTGCTTTGGGGAATACAATTGCTTGTAATGATCATGTCGCTCTCACACATACTGATCTTGATCGGGTATTTTTGGACTTATCCTTCCCACTTCACATTATGCTTCTAGTCACTTTCTACCTCACCATCAGTTTGTCTTAGCTTGTACTCTCTTGAACAGTGACCTTCCATTTCAATCTTTCTAATATCCTAGTTTCTTGAAAATGTTCACAAAATAGCTTGTACCTGCCTCGAAAACAATAGCTTCTTTTGAGCAGTGTTGGTAATTTCTGAACTGAGTGTCAATGTTGAGCACATATTCAAATAAAGACAGGACATGCTACAGAATATGGGGACTCTTTGATTGGAGTATCTTCTTAGAAAAGTTCTCTTTTGCAAATTATACATCTGGAACTTGAGGCTGCTTTAGTGCTGACATTTTGCCATGCATTCCTCTTTTTCTACTAAAAGAATCGAGTTCTCTCATTGTGATCAGGAAACTGAAGATCTCATTGCTGATGTTCTCGGAGTTGAGGTCTTTAGGCAAACAATAGCAGGCAACGACCTCGTGGGAAGCTACTGTAGCTTTACAAACAGGGGTGGCTTGGTAATATTAACCTCCTGTGCTCCTTAACCAAGTGTAGTTTCCATATTGAGCTTCATTCCTTCAACTGCATGTAAAAGAATTACCTGAATGTTGGAATTGTGCGAACATTCTGCAGGTTCATCCACATACATCCATTGAAGATCTAGATGAGTTATCAACTCTTCTTCAGGTCCCATTAGTCGCTGGAACTGTGAATCGTGGAAGTGCGGTGATTGCTGCTGGGTTGACAGCAAATGATTGGACTGCATTTTGTGGTTCAGACACCAGCGCCACTGAGTTATCGGTCATCGAGAGTGTTTTCAAATTGAGGGAGGCTCAACCAAGTTCCATTGTTGAAGAAATGAGGAAGTCACTAATAGACAGTTACGTATGAGGAGGAGGAGTCTCTTCTACTACACCTAAGATCTTGCAAGCAATTAATTGTTATTACTCTTGTGTCTGTATCCTTCAGTTTTATTTAACAACATTGTGAGTATAAAAGTCGACTCTGCACTTGTAGTGTTTTGGTCGAAATTGTGGTTCCATATTTGCTAATATAGATCTGTTTTTGTAATGGTTAACCAATATTTTATTTGATATCCCCTTCCGTTTCAGTTTGTTCACTTACTAATAGAGTAATCAAAAGGTGAAAAATAGGAAGTGTAGTTTCATAAGAAAAGGTTTAATCTCTTTCTTTGTTTATGCCGTAATGCAAATGTCAGTTTCAT

mRNA sequence

AAATCACAGCAACAATAATTATTTCTATATTTGATTAAGATTGGTTATAGATTTTGTCTATAAATGTGGGGTTTACAGTTTATTTTGTAAATTAGGTTTCAATTGGGATCTTTTTGACACAGCGGTTGTGAATTTCTTCTTCATCTTCATTCTTCAACCTTTTCATGGCGACCAGGCTTATGTTTGAAAACTCATGTGAAATTGGAGTTTTCTCCAAGCTCACTAATTCGTACTGTCTGGTTGCAATTGGTGGTTCTGAAGATTTCTATAGTACCTTTGAAGCTGAATTAGGTGCTGTCATTCCCGTGGTTAAAACATCTATTCATGGCACTCGCATTATTGGTCGTCTATGTGCTGGAAATAAAAATGGGCTTCTTCTACCACACACCACTACTGACCAAGAACTCCAGCACTTGAGGAACAGCCTACCTGACCAAGTTGTTGTTCAACGTATACAAGAGAGATTGTCTGCTTTGGGGAATACAATTGCTTGTAATGATCATGTCGCTCTCACACATACTGATCTTGATCGGGAAACTGAAGATCTCATTGCTGATGTTCTCGGAGTTGAGGTCTTTAGGCAAACAATAGCAGGCAACGACCTCGTGGGAAGCTACTGTAGCTTTACAAACAGGGGTGGCTTGGTTCATCCACATACATCCATTGAAGATCTAGATGAGTTATCAACTCTTCTTCAGGTCCCATTAGTCGCTGGAACTGTGAATCGTGGAAGTGCGGTGATTGCTGCTGGGTTGACAGCAAATGATTGGACTGCATTTTGTGGTTCAGACACCAGCGCCACTGAGTTATCGGTCATCGAGAGTGTTTTCAAATTGAGGGAGGCTCAACCAAGTTCCATTGTTGAAGAAATGAGGAAGTCACTAATAGACAGTTACGTATGAGGAGGAGGAGTCTCTTCTACTACACCTAAGATCTTGCAAGCAATTAATTGTTATTACTCTTGTGTCTGTATCCTTCAGTTTTATTTAACAACATTGTGAGTATAAAAGTCGACTCTGCACTTGTAGTGTTTTGGTCGAAATTGTGGTTCCATATTTGCTAATATAGATCTGTTTTTGTAATGGTTAACCAATATTTTATTTGATATCCCCTTCCGTTTCAGTTTGTTCACTTACTAATAGAGTAATCAAAAGGTGAAAAATAGGAAGTGTAGTTTCATAAGAAAAGGTTTAATCTCTTTCTTTGTTTATGCCGTAATGCAAATGTCAGTTTCAT

Coding sequence (CDS)

ATGGCGACCAGGCTTATGTTTGAAAACTCATGTGAAATTGGAGTTTTCTCCAAGCTCACTAATTCGTACTGTCTGGTTGCAATTGGTGGTTCTGAAGATTTCTATAGTACCTTTGAAGCTGAATTAGGTGCTGTCATTCCCGTGGTTAAAACATCTATTCATGGCACTCGCATTATTGGTCGTCTATGTGCTGGAAATAAAAATGGGCTTCTTCTACCACACACCACTACTGACCAAGAACTCCAGCACTTGAGGAACAGCCTACCTGACCAAGTTGTTGTTCAACGTATACAAGAGAGATTGTCTGCTTTGGGGAATACAATTGCTTGTAATGATCATGTCGCTCTCACACATACTGATCTTGATCGGGAAACTGAAGATCTCATTGCTGATGTTCTCGGAGTTGAGGTCTTTAGGCAAACAATAGCAGGCAACGACCTCGTGGGAAGCTACTGTAGCTTTACAAACAGGGGTGGCTTGGTTCATCCACATACATCCATTGAAGATCTAGATGAGTTATCAACTCTTCTTCAGGTCCCATTAGTCGCTGGAACTGTGAATCGTGGAAGTGCGGTGATTGCTGCTGGGTTGACAGCAAATGATTGGACTGCATTTTGTGGTTCAGACACCAGCGCCACTGAGTTATCGGTCATCGAGAGTGTTTTCAAATTGAGGGAGGCTCAACCAAGTTCCATTGTTGAAGAAATGAGGAAGTCACTAATAGACAGTTACGTATGA

Protein sequence

MATRLMFENSCEIGVFSKLTNSYCLVAIGGSEDFYSTFEAELGAVIPVVKTSIHGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTDLDRETEDLIADVLGVEVFRQTIAGNDLVGSYCSFTNRGGLVILTSCAP*
Homology
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BLAST of MELO3C023215T2 vs. Swiss-Prot
Match: IF62_ARATH (Eukaryotic translation initiation factor 6-2 OS=Arabidopsis thaliana GN=EIF6-2 PE=2 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 7.6e-75
Identity = 136/161 (84.47%), Postives = 149/161 (92.55%), Query Frame = 1 

Query: 1   MATRLMFENSCEIGVFSKLTNSYCLVAIGGSEDFYSTFEAELGAVIPVVKTSIHGTRIIG 60
           MATRL FEN+CE+GVFSKLTN+YCLVAIGGSE+FYS FE+EL  VIP+VKTSI GTRIIG
Sbjct: 1   MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFESELADVIPIVKTSIGGTRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
           RLCAGNKNGLL+PHTTTDQELQHLRNSLPDQVVVQRI ERLSALGN IACND+VAL HTD
Sbjct: 61  RLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDYVALAHTD 120

Query: 121 LDRETEDLIADVLGVEVFRQTIAGNDLVGSYCSFTNRGGLV 162
           LD+ETE++IADVLGVEVFRQTIAGN LVGSYC+ +N+GG+V
Sbjct: 121 LDKETEEIIADVLGVEVFRQTIAGNILVGSYCALSNKGGMV 161

[Close]
BLAST of MELO3C023215T2 vs. Swiss-Prot
Match: IF6_BETVU (Eukaryotic translation initiation factor 6 (Fragment) OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 4.3e-70
Identity = 132/161 (81.99%), Postives = 142/161 (88.20%), Query Frame = 1 

Query: 1   MATRLMFENSCEIGVFSKLTNSYCLVAIGGSEDFYSTFEAELGAVIPVVKTSIHGTRIIG 60
           MATRL FEN+CE+GVFSKLTN+YCLVAIGGSE+FYSTFE EL   IPVVKTSI GTRIIG
Sbjct: 1   MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSTFETELADYIPVVKTSIAGTRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
                NKNGLL+PHTTTDQELQHLRN LPD VVVQRI+E+LSALGN IACND+VALTHTD
Sbjct: 61  PNVCRNKNGLLVPHTTTDQELQHLRNCLPDSVVVQRIEEKLSALGNCIACNDYVALTHTD 120

Query: 121 LDRETEDLIADVLGVEVFRQTIAGNDLVGSYCSFTNRGGLV 162
           LD+ETE+LIADVLGVEVF QTIAGN LVGSYC+ TN+GGLV
Sbjct: 121 LDKETEELIADVLGVEVFGQTIAGNILVGSYCAITNKGGLV 161

[Close]
BLAST of MELO3C023215T2 vs. Swiss-Prot
Match: IF6_YEAST (Eukaryotic translation initiation factor 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TIF6 PE=1 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 2.9e-66
Identity = 123/161 (76.40%), Postives = 139/161 (86.34%), Query Frame = 1 

Query: 1   MATRLMFENSCEIGVFSKLTNSYCLVAIGGSEDFYSTFEAELGAVIPVVKTSIHGTRIIG 60
           MATR  FENS EIGVFSKLTN+YCLVA+GGSE+FYS FEAELG  IP+V T+I GTRIIG
Sbjct: 1   MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
           R+ AGN+ GLL+P  TTDQELQHLRNSLPD V +QR++ERLSALGN I CND+VAL H D
Sbjct: 61  RMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPD 120

Query: 121 LDRETEDLIADVLGVEVFRQTIAGNDLVGSYCSFTNRGGLV 162
           +DRETE+LI+DVLGVEVFRQTI+GN LVGSYCS +N+GGLV
Sbjct: 121 IDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLV 161

[Close]
BLAST of MELO3C023215T2 vs. Swiss-Prot
Match: IF6_CANAL (Eukaryotic translation initiation factor 6 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=TIF6 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.9e-65
Identity = 120/161 (74.53%), Postives = 138/161 (85.71%), Query Frame = 1 

Query: 1   MATRLMFENSCEIGVFSKLTNSYCLVAIGGSEDFYSTFEAELGAVIPVVKTSIHGTRIIG 60
           MATR  FENS E+GVFS LTNSYCLVA+GGSE+FYS FEAELG VIP+V T+I GTRI+G
Sbjct: 1   MATRTQFENSNEVGVFSNLTNSYCLVAVGGSENFYSAFEAELGDVIPIVHTTIAGTRIVG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
           R+ +GN+ GLL+P  TTDQEL HLRNSLPD + +QR++ERLSALGN I CND+VAL H D
Sbjct: 61  RMTSGNRRGLLVPTQTTDQELMHLRNSLPDSIKIQRVEERLSALGNVICCNDYVALVHPD 120

Query: 121 LDRETEDLIADVLGVEVFRQTIAGNDLVGSYCSFTNRGGLV 162
           ++RETE+LIADVLGVEVFRQTIAGN LVGSYCS +N+GGLV
Sbjct: 121 IERETEELIADVLGVEVFRQTIAGNVLVGSYCSLSNQGGLV 161

[Close]
BLAST of MELO3C023215T2 vs. Swiss-Prot
Match: IF6_OSTLU (Eukaryotic translation initiation factor 6 OS=Ostreococcus lucimarinus (strain CCE9901) GN=EIF6 PE=3 SV=2)

HSP 1 Score: 241.1 bits (614), Expect = 8.7e-63
Identity = 113/161 (70.19%), Postives = 136/161 (84.47%), Query Frame = 1 

Query: 1   MATRLMFENSCEIGVFSKLTNSYCLVAIGGSEDFYSTFEAELGAVIPVVKTSIHGTRIIG 60
           MA R  FENS EIGVF+ LTN+YCL A+GGSE+FYS FEAEL   IPV+K S+ GTR++G
Sbjct: 1   MAARHQFENSNEIGVFAALTNAYCLAAVGGSENFYSVFEAELSNEIPVIKASLAGTRLVG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
           RL  GNK+GLLLP + TDQE+ H+RNSLPD+V+VQR +ERLSALGN +ACNDHVAL H D
Sbjct: 61  RLSVGNKHGLLLPTSATDQEVMHIRNSLPDEVIVQRTEERLSALGNCVACNDHVALVHPD 120

Query: 121 LDRETEDLIADVLGVEVFRQTIAGNDLVGSYCSFTNRGGLV 162
           +D+ETE++IADVLGVEVFRQ++AGN LVGS+C F+NRGG+V
Sbjct: 121 IDQETEEIIADVLGVEVFRQSVAGNVLVGSFCKFSNRGGMV 161

[Close]
BLAST of MELO3C023215T2 vs. TrEMBL
Match: A0A0A0LJY3_CUCSA (Eukaryotic translation initiation factor 6 OS=Cucumis sativus GN=EIF6 PE=3 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 9.6e-85
Identity = 159/161 (98.76%), Postives = 160/161 (99.38%), Query Frame = 1 

Query: 1   MATRLMFENSCEIGVFSKLTNSYCLVAIGGSEDFYSTFEAELGAVIPVVKTSIHGTRIIG 60
           MATRLMFENSCEIGVFSKLTNSYCLVAIGGSEDFYSTFEAELGAVIPVVKTSIHGTRIIG
Sbjct: 1   MATRLMFENSCEIGVFSKLTNSYCLVAIGGSEDFYSTFEAELGAVIPVVKTSIHGTRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
           RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVAL HTD
Sbjct: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTD 120

Query: 121 LDRETEDLIADVLGVEVFRQTIAGNDLVGSYCSFTNRGGLV 162
           LDRETEDLIADVLGVEVFRQT+AGNDLVGSYCSFTNRGGLV
Sbjct: 121 LDRETEDLIADVLGVEVFRQTVAGNDLVGSYCSFTNRGGLV 161

[Close]
BLAST of MELO3C023215T2 vs. TrEMBL
Match: A0A067FVY8_CITSI (Eukaryotic translation initiation factor 6 OS=Citrus sinensis GN=EIF6 PE=3 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 5.1e-78
Identity = 148/161 (91.93%), Postives = 154/161 (95.65%), Query Frame = 1 

Query: 1   MATRLMFENSCEIGVFSKLTNSYCLVAIGGSEDFYSTFEAELGAVIPVVKTSIHGTRIIG 60
           MATRLMFENSCE+GVFSKLTN+YCLVAIGGSE FYSTFEAEL  V PVVKTSI GTRIIG
Sbjct: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
           RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRI+ERLSALGN IACNDHVALTHTD
Sbjct: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120

Query: 121 LDRETEDLIADVLGVEVFRQTIAGNDLVGSYCSFTNRGGLV 162
           LDRETE++IADVLGVEVFRQTIAGN LVGSYCSF+NRGGLV
Sbjct: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLV 161

[Close]
BLAST of MELO3C023215T2 vs. TrEMBL
Match: V4SN16_9ROSI (Eukaryotic translation initiation factor 6 OS=Citrus clementina GN=EIF6 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 6.7e-78
Identity = 148/161 (91.93%), Postives = 154/161 (95.65%), Query Frame = 1 

Query: 1   MATRLMFENSCEIGVFSKLTNSYCLVAIGGSEDFYSTFEAELGAVIPVVKTSIHGTRIIG 60
           MATRLMFENSCE+GVFSKL N+YCLVAIGGSE FYSTFEAEL  VIPVVKTSI GTRIIG
Sbjct: 1   MATRLMFENSCEVGVFSKLANAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
           RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRI+ERLSALGN IACNDHVALTHTD
Sbjct: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120

Query: 121 LDRETEDLIADVLGVEVFRQTIAGNDLVGSYCSFTNRGGLV 162
           LDRETE++IADVLGVEVFRQTIAGN LVGSYCSF+NRGGLV
Sbjct: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLV 161

[Close]
BLAST of MELO3C023215T2 vs. TrEMBL
Match: A0A061DF04_THECC (Eukaryotic translation initiation factor 6 OS=Theobroma cacao GN=EIF6 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 2.5e-77
Identity = 147/161 (91.30%), Postives = 153/161 (95.03%), Query Frame = 1 

Query: 1   MATRLMFENSCEIGVFSKLTNSYCLVAIGGSEDFYSTFEAELGAVIPVVKTSIHGTRIIG 60
           MATRLMFENSCE+GVFSKLTN+YCLVAIGGSE FYSTFEAEL  VIPVVKTSI GTRIIG
Sbjct: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIAGTRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
           RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQR+ ERLSALGN IACNDHVALTHTD
Sbjct: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRVDERLSALGNCIACNDHVALTHTD 120

Query: 121 LDRETEDLIADVLGVEVFRQTIAGNDLVGSYCSFTNRGGLV 162
           LDRETE+LIADVLGVEVFRQTIAGN LVGSYC+ +NRGGLV
Sbjct: 121 LDRETEELIADVLGVEVFRQTIAGNILVGSYCAISNRGGLV 161

[Close]
BLAST of MELO3C023215T2 vs. TrEMBL
Match: A9PJA8_9ROSI (Eukaryotic translation initiation factor 6 OS=Populus trichocarpa x Populus deltoides GN=EIF6 PE=2 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 3.3e-77
Identity = 143/161 (88.82%), Postives = 157/161 (97.52%), Query Frame = 1 

Query: 1   MATRLMFENSCEIGVFSKLTNSYCLVAIGGSEDFYSTFEAELGAVIPVVKTSIHGTRIIG 60
           MATRLMFENSCE+GVFSKLTN+YCLVAIGGSE+FYSTFEAELG VIPVVKTSI G+RIIG
Sbjct: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSENFYSTFEAELGDVIPVVKTSIGGSRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
           RLCAGNKNG+LLPHTTTDQELQHLRNSLPDQVVVQRI+ERLSALGN +ACNDHVALTHTD
Sbjct: 61  RLCAGNKNGILLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNGVACNDHVALTHTD 120

Query: 121 LDRETEDLIADVLGVEVFRQTIAGNDLVGSYCSFTNRGGLV 162
           LD+ETE++I+DVLGVEVFRQT+AGN LVGSYC+F+NRGGLV
Sbjct: 121 LDKETEEMISDVLGVEVFRQTVAGNVLVGSYCAFSNRGGLV 161

[Close]
BLAST of MELO3C023215T2 vs. TAIR10
Match: AT3G55620.1 (AT3G55620.1 Translation initiation factor IF6)

HSP 1 Score: 281.2 bits (718), Expect = 4.3e-76
Identity = 136/161 (84.47%), Postives = 149/161 (92.55%), Query Frame = 1 

Query: 1   MATRLMFENSCEIGVFSKLTNSYCLVAIGGSEDFYSTFEAELGAVIPVVKTSIHGTRIIG 60
           MATRL FEN+CE+GVFSKLTN+YCLVAIGGSE+FYS FE+EL  VIP+VKTSI GTRIIG
Sbjct: 1   MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFESELADVIPIVKTSIGGTRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
           RLCAGNKNGLL+PHTTTDQELQHLRNSLPDQVVVQRI ERLSALGN IACND+VAL HTD
Sbjct: 61  RLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDYVALAHTD 120

Query: 121 LDRETEDLIADVLGVEVFRQTIAGNDLVGSYCSFTNRGGLV 162
           LD+ETE++IADVLGVEVFRQTIAGN LVGSYC+ +N+GG+V
Sbjct: 121 LDKETEEIIADVLGVEVFRQTIAGNILVGSYCALSNKGGMV 161

[Close]
BLAST of MELO3C023215T2 vs. TAIR10
Match: AT2G39820.1 (AT2G39820.1 Translation initiation factor IF6)

HSP 1 Score: 221.1 bits (562), Expect = 5.2e-58
Identity = 109/163 (66.87%), Postives = 134/163 (82.21%), Query Frame = 1 

Query: 1   MATRLMFENS-CEIGVFSKLTNSYCLV-AIGGSEDFYSTFEAELGAVIPVVKTSIHGTRI 60
           MATRL ++N+ CEIGVFSKLTN+YCLV A   S +F++ +E++L  VIP+V TSI G+  
Sbjct: 1   MATRLQYDNNNCEIGVFSKLTNAYCLVSATSASANFFTGYESKLKGVIPIVTTSIGGSGT 60

Query: 61  IGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTH 120
           IG LC GNKNGLLL HT TDQELQHLR+SLPD+VVVQRI+E + ALGN IACND+VAL H
Sbjct: 61  IGSLCVGNKNGLLLSHTITDQELQHLRDSLPDEVVVQRIEEPICALGNAIACNDYVALVH 120

Query: 121 TDLDRETEDLIADVLGVEVFRQTIAGNDLVGSYCSFTNRGGLV 162
             L+++TE++I+DVLGVEV+RQTIA N+LVGSYCS +N GG+V
Sbjct: 121 PKLEKDTEEIISDVLGVEVYRQTIANNELVGSYCSLSNNGGMV 163

[Close]
BLAST of MELO3C023215T2 vs. NCBI nr
Match: gi|659121875|ref|XP_008460856.1| (PREDICTED: eukaryotic translation initiation factor 6-2-like [Cucumis melo])

HSP 1 Score: 323.2 bits (827), Expect = 2.8e-85
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1 

Query: 1   MATRLMFENSCEIGVFSKLTNSYCLVAIGGSEDFYSTFEAELGAVIPVVKTSIHGTRIIG 60
           MATRLMFENSCEIGVFSKLTNSYCLVAIGGSEDFYSTFEAELGAVIPVVKTSIHGTRIIG
Sbjct: 1   MATRLMFENSCEIGVFSKLTNSYCLVAIGGSEDFYSTFEAELGAVIPVVKTSIHGTRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
           RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD
Sbjct: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120

Query: 121 LDRETEDLIADVLGVEVFRQTIAGNDLVGSYCSFTNRGGLV 162
           LDRETEDLIADVLGVEVFRQTIAGNDLVGSYCSFTNRGGLV
Sbjct: 121 LDRETEDLIADVLGVEVFRQTIAGNDLVGSYCSFTNRGGLV 161

[Close]
BLAST of MELO3C023215T2 vs. NCBI nr
Match: gi|449459212|ref|XP_004147340.1| (PREDICTED: eukaryotic translation initiation factor 6-2 [Cucumis sativus])

HSP 1 Score: 320.9 bits (821), Expect = 1.4e-84
Identity = 159/161 (98.76%), Postives = 160/161 (99.38%), Query Frame = 1 

Query: 1   MATRLMFENSCEIGVFSKLTNSYCLVAIGGSEDFYSTFEAELGAVIPVVKTSIHGTRIIG 60
           MATRLMFENSCEIGVFSKLTNSYCLVAIGGSEDFYSTFEAELGAVIPVVKTSIHGTRIIG
Sbjct: 1   MATRLMFENSCEIGVFSKLTNSYCLVAIGGSEDFYSTFEAELGAVIPVVKTSIHGTRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
           RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVAL HTD
Sbjct: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHTD 120

Query: 121 LDRETEDLIADVLGVEVFRQTIAGNDLVGSYCSFTNRGGLV 162
           LDRETEDLIADVLGVEVFRQT+AGNDLVGSYCSFTNRGGLV
Sbjct: 121 LDRETEDLIADVLGVEVFRQTVAGNDLVGSYCSFTNRGGLV 161

[Close]
BLAST of MELO3C023215T2 vs. NCBI nr
Match: gi|568825493|ref|XP_006467112.1| (PREDICTED: eukaryotic translation initiation factor 6-2 [Citrus sinensis])

HSP 1 Score: 300.1 bits (767), Expect = 2.5e-78
Identity = 149/161 (92.55%), Postives = 155/161 (96.27%), Query Frame = 1 

Query: 1   MATRLMFENSCEIGVFSKLTNSYCLVAIGGSEDFYSTFEAELGAVIPVVKTSIHGTRIIG 60
           MATRLMFENSCE+GVFSKLTN+YCLVAIGGSE FYSTFEAEL  VIPVVKTSI GTRIIG
Sbjct: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
           RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRI+ERLSALGN IACNDHVALTHTD
Sbjct: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120

Query: 121 LDRETEDLIADVLGVEVFRQTIAGNDLVGSYCSFTNRGGLV 162
           LDRETE++IADVLGVEVFRQTIAGN LVGSYCSF+NRGGLV
Sbjct: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLV 161

[Close]
BLAST of MELO3C023215T2 vs. NCBI nr
Match: gi|641852694|gb|KDO71559.1| (hypothetical protein CISIN_1g0259812mg [Citrus sinensis])

HSP 1 Score: 298.5 bits (763), Expect = 7.3e-78
Identity = 148/161 (91.93%), Postives = 154/161 (95.65%), Query Frame = 1 

Query: 1   MATRLMFENSCEIGVFSKLTNSYCLVAIGGSEDFYSTFEAELGAVIPVVKTSIHGTRIIG 60
           MATRLMFENSCE+GVFSKLTN+YCLVAIGGSE FYSTFEAEL  V PVVKTSI GTRIIG
Sbjct: 1   MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
           RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRI+ERLSALGN IACNDHVALTHTD
Sbjct: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120

Query: 121 LDRETEDLIADVLGVEVFRQTIAGNDLVGSYCSFTNRGGLV 162
           LDRETE++IADVLGVEVFRQTIAGN LVGSYCSF+NRGGLV
Sbjct: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLV 161

[Close]
BLAST of MELO3C023215T2 vs. NCBI nr
Match: gi|567865247|ref|XP_006425246.1| (hypothetical protein CICLE_v10026354mg [Citrus clementina])

HSP 1 Score: 298.1 bits (762), Expect = 9.5e-78
Identity = 148/161 (91.93%), Postives = 154/161 (95.65%), Query Frame = 1 

Query: 1   MATRLMFENSCEIGVFSKLTNSYCLVAIGGSEDFYSTFEAELGAVIPVVKTSIHGTRIIG 60
           MATRLMFENSCE+GVFSKL N+YCLVAIGGSE FYSTFEAEL  VIPVVKTSI GTRIIG
Sbjct: 1   MATRLMFENSCEVGVFSKLANAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIG 60

Query: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALTHTD 120
           RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRI+ERLSALGN IACNDHVALTHTD
Sbjct: 61  RLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTD 120

Query: 121 LDRETEDLIADVLGVEVFRQTIAGNDLVGSYCSFTNRGGLV 162
           LDRETE++IADVLGVEVFRQTIAGN LVGSYCSF+NRGGLV
Sbjct: 121 LDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLV 161

The following BLAST results are available for this feature:
BLAST of MELO3C023215T2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
IF62_ARATH7.6e-7584.47Eukaryotic translation initiation factor 6-2 OS=Arabidopsis thaliana GN=EIF6-2 P... [more]
IF6_BETVU4.3e-7081.99Eukaryotic translation initiation factor 6 (Fragment) OS=Beta vulgaris PE=2 SV=1[more]
IF6_YEAST2.9e-6676.40Eukaryotic translation initiation factor 6 OS=Saccharomyces cerevisiae (strain A... [more]
IF6_CANAL1.9e-6574.53Eukaryotic translation initiation factor 6 OS=Candida albicans (strain SC5314 / ... [more]
IF6_OSTLU8.7e-6370.19Eukaryotic translation initiation factor 6 OS=Ostreococcus lucimarinus (strain C... [more]
BLAST of MELO3C023215T2 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJY3_CUCSA9.6e-8598.76Eukaryotic translation initiation factor 6 OS=Cucumis sativus GN=EIF6 PE=3 SV=1[more]
A0A067FVY8_CITSI5.1e-7891.93Eukaryotic translation initiation factor 6 OS=Citrus sinensis GN=EIF6 PE=3 SV=1[more]
V4SN16_9ROSI6.7e-7891.93Eukaryotic translation initiation factor 6 OS=Citrus clementina GN=EIF6 PE=3 SV=... [more]
A0A061DF04_THECC2.5e-7791.30Eukaryotic translation initiation factor 6 OS=Theobroma cacao GN=EIF6 PE=3 SV=1[more]
A9PJA8_9ROSI3.3e-7788.82Eukaryotic translation initiation factor 6 OS=Populus trichocarpa x Populus delt... [more]
BLAST of MELO3C023215T2 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G55620.14.3e-7684.47 Translation initiation factor IF6[more]
AT2G39820.15.2e-5866.87 Translation initiation factor IF6[more]
BLAST of MELO3C023215T2 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659121875|ref|XP_008460856.1|2.8e-85100.00PREDICTED: eukaryotic translation initiation factor 6-2-like [Cucumis melo][more]
gi|449459212|ref|XP_004147340.1|1.4e-8498.76PREDICTED: eukaryotic translation initiation factor 6-2 [Cucumis sativus][more]
gi|568825493|ref|XP_006467112.1|2.5e-7892.55PREDICTED: eukaryotic translation initiation factor 6-2 [Citrus sinensis][more]
gi|641852694|gb|KDO71559.1|7.3e-7891.93hypothetical protein CISIN_1g0259812mg [Citrus sinensis][more]
gi|567865247|ref|XP_006425246.1|9.5e-7891.93hypothetical protein CICLE_v10026354mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002769eIF6
Vocabulary: Biological Process
TermDefinition
GO:0042256mature ribosome assembly
Vocabulary: Molecular Function
TermDefinition
GO:0043022ribosome binding
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042256 mature ribosome assembly
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0042273 ribosomal large subunit biogenesis
cellular_component GO:0005829 cytosol
cellular_component GO:0005730 nucleolus
cellular_component GO:0005840 ribosome
molecular_function GO:0043022 ribosome binding
molecular_function GO:0043023 ribosomal large subunit binding
molecular_function GO:0003743 translation initiation factor activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C023215MELO3C023215gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C023215T2MELO3C023215T2-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C023215T2.cds1MELO3C023215T2.cds1CDS
MELO3C023215T2.cds2MELO3C023215T2.cds2CDS
MELO3C023215T2.cds3MELO3C023215T2.cds3CDS
MELO3C023215T2.cds4MELO3C023215T2.cds4CDS
MELO3C023215T2.cds5MELO3C023215T2.cds5CDS
MELO3C023215T2.cds6MELO3C023215T2.cds6CDS
MELO3C023215T2.cds7MELO3C023215T2.cds7CDS


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002769Translation initiation factor IF6HAMAPMF_00032eIF_6coord: 1..168
score: 8
IPR002769Translation initiation factor IF6PANTHERPTHR10784EUKARYOTIC TRANSLATION INITIATION FACTOR 6coord: 2..161
score: 2.5E
IPR002769Translation initiation factor IF6PFAMPF01912eIF-6coord: 4..161
score: 1.2
IPR002769Translation initiation factor IF6SMARTSM00654eIF6neu2coord: 3..167
score: 1.2
IPR002769Translation initiation factor IF6TIGRFAMsTIGR00323TIGR00323coord: 4..161
score: 4.7
NoneNo IPR availableGENE3DG3DSA:3.75.10.10coord: 1..161
score: 2.4
NoneNo IPR availableunknownSSF55909Penteincoord: 1..161
score: 6.77