MELO3C023193T2 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C023193T2
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Trafficking protein particle complex subunit 2
Location	chr11 : 74838 .. 76347 (+)
Sequence length	897

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGACCTTCCGAATTGCTACTCAGAATGGCGAACACAGCTTGTTTCATCATCGTCAGTAGGAACAATATCCCAATTTATGAAGCTGAAGTCGGATCTGCTGTTAAAGTATTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTGCTTTCCATTTTGTTTTTCATGTTTAGGCTGAATGTTTCCTTCACAAGATCGCCAATAAAAGGTGATATCGTTAATTACTTTAGTTTTGACTGTCATTAGTCGCTCATCTTTTTGGCATGACATGAAAGAGAGAGGATTCCGCCCAGCTGCATCAATTTATATTGCATGCGTCCCTTGACATTGTCCAAGACCTGGCATGGACTACTAGTGCCATGTGAGTTCGCATTCCTTCTAGTTCTTTATTAGATCATCGAGACGCCTCCTCTATCTTATTTTTCTTTTTGTTCTTTTCCCCTTTAAATTTCGCCTTAACTACCTTTTTGGATTTTATGCAGGTTCTTGAAAGCAGTCGATAGGTTCAATGATTTGGTGGTGTCTGTCTATGTAACCGCTGGTCATATCCTTTAATGTCGAGAGGGTTTGTCAGGCACACTATGTTGGAAATTGTGTCAAATTTCATTAATGCACGCACCCGTAAAACTCAACTCTAAATTAATGAAAGTTTTATCTTTGAATCTTTTGCATCTGTACCCCACCCCCCACCATTGCATTACTGGTATATTGACTTATGGAATCTGCAATCAAACCTTTTCATTATACGAGATACATGGTTTCCTACGATTCAGGCATTCTAAATACATTTGAGAGATTAATTTCAGTTCGTAGTTCATATTGTTCCCTTCTTTTACCAATATTCTGATTTTCCTTTGACTATTCACTACATACGCGATTGATGTTACTTCACGACTCTCGCAATGACGATGGAATCAAGAGTTTTTTTCAAGAGGTTCATGAGCTTTACATAAAGGTAAGTTGGACATTTTTTCTTCTGTATCACTATTGTTATTGCTTGTGGTGCTTAGTGTGTGTATGTGTGTGTGTTTTTCAACAACACGCGGGGGAGTGTTGTGCTTAATTTTTCTATGTTATGTATATTATATTGGTTGATTGAAGTATATCTTAGTTGATTAAGTTACTTTTCCAAAGCTGGGAGGCATACTTTGATTCGGTCAGACATGAGTGGCATTCCCTTTTACTTATTTTCTTCGTTTAGAACCTGGTGGACATTGAAAAACTGATGTGTAACTTCCTTTGGGAAGAGGTGGAAGAAGGAAACAGACTGCAACGAGTTAGATGGGAGATCGATGAACTGGGGGAATTAAAATTTGTTATGAAAGCCCTATTAGCTAAATGGCTTTCGCATTTTGCTCTTGATTCTATTACCTTTTTGCACAAGGATATTGCTTGCAAGTTTGGGCCTCATCCCTTTGAGTGGTTGTCAGGTGGGATTAAAGGCATCGACTAGAATTTGTGGAAGGATATTTCTAACAAGCTGCCCTCTTTCTACCATTCTGTCTGTTGTG

mRNA sequence

AGAGACCTTCCGAATTGCTACTCAGAATGGCGAACACAGCTTGTTTCATCATCGTCAGTAGGAACAATATCCCAATTTATGAAGCTGAAGTCGGATCTGCTGTTAAAAGAGAGGATTCCGCCCAGCTGCATCAATTTATATTGCATGCGTCCCTTGACATTGTCCAAGACCTGGCATGGACTACTAGTGCCATGTTCTTGAAAGCAGTCGATAGGTTCAATGATTTGGTGGTGTCTGTCTATGTAACCGCTGGTCATACGCGATTGATGTTACTTCACGACTCTCGCAATGACGATGGAATCAAGAGTTTTTTTCAAGAGGTTCATGAGCTTTACATAAAGGTAAGTTGGACATTTTTTCTTCTGTATCACTATTGTTATTGCTTGTGGTGCTTAGTGTGTGTATGTGTGTGTGTTTTTCAACAACACGCGGGGGAGTGTTGTGCTTAATTTTTCTATGTTATGTATATTATATTGGTTGATTGAAGTATATCTTAGTTGATTAAGTTACTTTTCCAAAGCTGGGAGGCATACTTTGATTCGGTCAGACATGAGTGGCATTCCCTTTTACTTATTTTCTTCGTTTAGAACCTGGTGGACATTGAAAAACTGATGTGTAACTTCCTTTGGGAAGAGGTGGAAGAAGGAAACAGACTGCAACGAGTTAGATGGGAGATCGATGAACTGGGGGAATTAAAATTTGTTATGAAAGCCCTATTAGCTAAATGGCTTTCGCATTTTGCTCTTGATTCTATTACCTTTTTGCACAAGGATATTGCTTGCAAGTTTGGGCCTCATCCCTTTGAGTGGTTGTCAGGTGGGATTAAAGGCATCGACTAGAATTTGTGGAAGGATATTTCTAACAAGCTGCCCTCTTTCTACCATTCTGTCTGTTGTG

Coding sequence (CDS)

ATGGCGAACACAGCTTGTTTCATCATCGTCAGTAGGAACAATATCCCAATTTATGAAGCTGAAGTCGGATCTGCTGTTAAAAGAGAGGATTCCGCCCAGCTGCATCAATTTATATTGCATGCGTCCCTTGACATTGTCCAAGACCTGGCATGGACTACTAGTGCCATGTTCTTGAAAGCAGTCGATAGGTTCAATGATTTGGTGGTGTCTGTCTATGTAACCGCTGGTCATACGCGATTGATGTTACTTCACGACTCTCGCAATGACGATGGAATCAAGAGTTTTTTTCAAGAGGTTCATGAGCTTTACATAAAGGTAAGTTGGACATTTTTTCTTCTGTATCACTATTGTTATTGCTTGTGGTGCTTAGTGTGTGTATGTGTGTGTGTTTTTCAACAACACGCGGGGGAGTGTTGTGCTTAA

Protein sequence

MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSWTFFLLYHYCYCLWCLVCVCVCVFQQHAGECCA*

Homology

[Close]

BLAST of MELO3C023193T2 vs. Swiss-Prot
Match: TPC2B_HUMAN (Trafficking protein particle complex subunit 2B OS=Homo sapiens GN=TRAPPC2B PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-23
Identity = 52/114 (45.61%), Postives = 76/114 (66.67%), Query Frame = 1


Query: 1   MANTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMF 60
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 61  LKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSWTFF 112
           LK VD+FN+  VS +VTAGH R ++LHD R +DGIK+FF +V++LYIK S   F
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPF 114

[Close]

BLAST of MELO3C023193T2 vs. Swiss-Prot
Match: TPPC2_PONAB (Trafficking protein particle complex subunit 2 OS=Pongo abelii GN=TRAPPC2 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-23
Identity = 52/114 (45.61%), Postives = 76/114 (66.67%), Query Frame = 1


Query: 1   MANTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMF 60
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 61  LKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSWTFF 112
           LK VD+FN+  VS +VTAGH R ++LHD R +DGIK+FF +V++LYIK S   F
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFSMNPF 114

[Close]

BLAST of MELO3C023193T2 vs. Swiss-Prot
Match: TPC2A_HUMAN (Trafficking protein particle complex subunit 2 OS=Homo sapiens GN=TRAPPC2 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-23
Identity = 52/114 (45.61%), Postives = 76/114 (66.67%), Query Frame = 1


Query: 1   MANTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMF 60
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 61  LKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSWTFF 112
           LK VD+FN+  VS +VTAGH R ++LHD R +DGIK+FF +V++LYIK S   F
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPF 114

[Close]

BLAST of MELO3C023193T2 vs. Swiss-Prot
Match: TPPC2_PIG (Trafficking protein particle complex subunit 2 OS=Sus scrofa GN=TRAPPC2 PE=2 SV=2)

HSP 1 Score: 109.0 bits (271), Expect = 4.3e-23
Identity = 51/114 (44.74%), Postives = 76/114 (66.67%), Query Frame = 1


Query: 1   MANTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMF 60
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 61  LKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSWTFF 112
           LK VD+FN+  VS +VTAGH R ++LHD R +DGIK+FF +V++LYIK +   F
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPF 114

[Close]

BLAST of MELO3C023193T2 vs. Swiss-Prot
Match: TPPC2_BOVIN (Trafficking protein particle complex subunit 2 OS=Bos taurus GN=TRAPPC2 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.3e-23
Identity = 51/114 (44.74%), Postives = 76/114 (66.67%), Query Frame = 1


Query: 1   MANTACFIIVSRNNIPIYEAE---VGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMF 60
           M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HA+LD+V +  W ++ M+
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 61  LKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSWTFF 112
           LK VD+FN+  VS +VTAGH R ++LHD R +DGIK+FF +V++LYIK +   F
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPF 114

[Close]

BLAST of MELO3C023193T2 vs. TrEMBL
Match: A0A067FL79_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032720mg PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.2e-49
Identity = 99/106 (93.40%), Postives = 103/106 (97.17%), Query Frame = 1


Query: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MA TACFIIVSRN IPIYEAEVGSAVKRED+AQLHQFILHA+LDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKV 107
           +DRFNDLVVSVYVTAGHTR MLLHDSRNDDGIKSFFQEVHELYIK+
Sbjct: 61  IDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKI 106

[Close]

BLAST of MELO3C023193T2 vs. TrEMBL
Match: A0A061EJF7_THECC (SNARE-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_019945 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 5.4e-49
Identity = 99/106 (93.40%), Postives = 103/106 (97.17%), Query Frame = 1


Query: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MA TACFIIVSRN+IPIYEAEVGSA KRED+AQLHQFILHA+LDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKV 107
           +DRFNDLVVSVYVTAGHTR MLLHDSRNDDGIKSFFQEVHELYIKV
Sbjct: 61  IDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKV 106

[Close]

BLAST of MELO3C023193T2 vs. TrEMBL
Match: A0A061EID8_THECC (SNARE-like superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_019945 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 7.1e-49
Identity = 98/106 (92.45%), Postives = 103/106 (97.17%), Query Frame = 1


Query: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MA TACFIIVSRN+IPIYEAEVGSA KRED+AQLHQFILHA+LDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKV 107
           +DRFNDLVVSVYVTAGHTR MLLHDSRNDDGIKSFFQEVHELYIK+
Sbjct: 61  IDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKI 106

[Close]

BLAST of MELO3C023193T2 vs. TrEMBL
Match: R0IGD2_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10021128mg PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 9.2e-49
Identity = 97/106 (91.51%), Postives = 104/106 (98.11%), Query Frame = 1


Query: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MANTACFIIV RN+IPIYEAEVGSA KRED+AQLHQFILHA+LD+VQDLAWTTSAMFLK+
Sbjct: 1   MANTACFIIVGRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDVVQDLAWTTSAMFLKS 60

Query: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKV 107
           VDRFNDLVVSVYVTAGHTRLMLLHDSRN+DGIKSFFQEVHELYIK+
Sbjct: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNEDGIKSFFQEVHELYIKI 106

[Close]

BLAST of MELO3C023193T2 vs. TrEMBL
Match: F4HTY0_ARATH (SNARE-like protein OS=Arabidopsis thaliana GN=At1g80500 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 9.2e-49
Identity = 97/106 (91.51%), Postives = 104/106 (98.11%), Query Frame = 1


Query: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MANTACFIIV RN+IPIYEAEVGSA KRED+AQLHQFILHA+LD+VQDLAWTTSAMFLK+
Sbjct: 1   MANTACFIIVGRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDVVQDLAWTTSAMFLKS 60

Query: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKV 107
           VDRFNDLVVSVYVTAGHTRLMLLHDSRN+DGIKSFFQEVHELYIK+
Sbjct: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNEDGIKSFFQEVHELYIKI 106

[Close]

BLAST of MELO3C023193T2 vs. TAIR10
Match: AT1G80500.1 (AT1G80500.1 SNARE-like superfamily protein)

HSP 1 Score: 201.1 bits (510), Expect = 4.7e-52
Identity = 97/106 (91.51%), Postives = 102/106 (96.23%), Query Frame = 1


Query: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MANTACFIIV RN+IPIYEAEVGSA KRED+AQLHQFILHA+LD+VQDLAWTTSAMFLK+
Sbjct: 1   MANTACFIIVGRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDVVQDLAWTTSAMFLKS 60

Query: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKV 107
           VDRFNDLVVSVYVTAGHTRLMLLHDSRN+DGIKSFFQEVHELYIK+
Sbjct: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNEDGIKSFFQEVHELYIKI 106

[Close]

BLAST of MELO3C023193T2 vs. NCBI nr
Match: gi|659121801|ref|XP_008460820.1| (PREDICTED: trafficking protein particle complex subunit 2 [Cucumis melo])

HSP 1 Score: 210.3 bits (534), Expect = 2.2e-51
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1


Query: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIK 106
           VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIK
Sbjct: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIK 105

[Close]

BLAST of MELO3C023193T2 vs. NCBI nr
Match: gi|449459192|ref|XP_004147330.1| (PREDICTED: transport protein particle 20 kDa subunit isoform X2 [Cucumis sativus])

HSP 1 Score: 208.0 bits (528), Expect = 1.1e-50
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 1


Query: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MA TACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIK 106
           VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIK
Sbjct: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIK 105

[Close]

BLAST of MELO3C023193T2 vs. NCBI nr
Match: gi|743818138|ref|XP_011020593.1| (PREDICTED: transport protein particle 20 kDa subunit isoform X1 [Populus euphratica])

HSP 1 Score: 206.5 bits (524), Expect = 3.2e-50
Identity = 102/125 (81.60%), Postives = 112/125 (89.60%), Query Frame = 1


Query: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MA TACFIIVSRN+IPIYEAEVGSA KRED+AQ+HQFILHA+LDIVQDLAWTTSAM+LKA
Sbjct: 1   MATTACFIIVSRNDIPIYEAEVGSATKREDAAQMHQFILHAALDIVQDLAWTTSAMYLKA 60

Query: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKVSWTFFLLYHYCYCL 120
           +DRFND+VVSVYVTAGHTR MLLHDSRNDDGIKSFFQEVHELYIKV+   FLL  +    
Sbjct: 61  IDRFNDMVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKVN--HFLLLLFGTLT 120

Query: 121 WCLVC 126
           W L+C
Sbjct: 121 WMLIC 123

[Close]

BLAST of MELO3C023193T2 vs. NCBI nr
Match: gi|778670342|ref|XP_011649448.1| (PREDICTED: transport protein particle 20 kDa subunit isoform X1 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 2.7e-49
Identity = 104/106 (98.11%), Postives = 104/106 (98.11%), Query Frame = 1


Query: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MA TACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAG-HTRLMLLHDSRNDDGIKSFFQEVHELYIK 106
           VDRFNDLVVSVYVTAG HTRLMLLHDSRNDDGIKSFFQEVHELYIK
Sbjct: 61  VDRFNDLVVSVYVTAGLHTRLMLLHDSRNDDGIKSFFQEVHELYIK 106

[Close]

BLAST of MELO3C023193T2 vs. NCBI nr
Match: gi|641845077|gb|KDO63966.1| (hypothetical protein CISIN_1g032720mg [Citrus sinensis])

HSP 1 Score: 202.6 bits (514), Expect = 4.6e-49
Identity = 99/106 (93.40%), Postives = 103/106 (97.17%), Query Frame = 1


Query: 1   MANTACFIIVSRNNIPIYEAEVGSAVKREDSAQLHQFILHASLDIVQDLAWTTSAMFLKA 60
           MA TACFIIVSRN IPIYEAEVGSAVKRED+AQLHQFILHA+LDIVQDLAWTTSAMFLKA
Sbjct: 1   MATTACFIIVSRNEIPIYEAEVGSAVKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKA 60

Query: 61  VDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSFFQEVHELYIKV 107
           +DRFNDLVVSVYVTAGHTR MLLHDSRNDDGIKSFFQEVHELYIK+
Sbjct: 61  IDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKI 106

The following BLAST results are available for this feature:

BLAST of MELO3C023193T2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TPC2B_HUMAN	1.9e-23	45.61	Trafficking protein particle complex subunit 2B OS=Homo sapiens GN=TRAPPC2B PE=1...	[more]
TPPC2_PONAB	1.9e-23	45.61	Trafficking protein particle complex subunit 2 OS=Pongo abelii GN=TRAPPC2 PE=2 S...	[more]
TPC2A_HUMAN	1.9e-23	45.61	Trafficking protein particle complex subunit 2 OS=Homo sapiens GN=TRAPPC2 PE=1 S...	[more]
TPPC2_PIG	4.3e-23	44.74	Trafficking protein particle complex subunit 2 OS=Sus scrofa GN=TRAPPC2 PE=2 SV=...	[more]
TPPC2_BOVIN	4.3e-23	44.74	Trafficking protein particle complex subunit 2 OS=Bos taurus GN=TRAPPC2 PE=2 SV=...	[more]

BLAST of MELO3C023193T2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067FL79_CITSI	3.2e-49	93.40	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032720mg PE=4 SV=1	[more]
A0A061EJF7_THECC	5.4e-49	93.40	SNARE-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_019945 PE=4 S...	[more]
A0A061EID8_THECC	7.1e-49	92.45	SNARE-like superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_019945 PE=4 S...	[more]
R0IGD2_9BRAS	9.2e-49	91.51	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10021128mg PE=4 SV=1	[more]
F4HTY0_ARATH	9.2e-49	91.51	SNARE-like protein OS=Arabidopsis thaliana GN=At1g80500 PE=4 SV=1	[more]

BLAST of MELO3C023193T2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G80500.1	4.7e-52	91.51	SNARE-like superfamily protein	[more]

BLAST of MELO3C023193T2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121801\|ref\|XP_008460820.1\|	2.2e-51	100.00	PREDICTED: trafficking protein particle complex subunit 2 [Cucumis melo]	[more]
gi\|449459192\|ref\|XP_004147330.1\|	1.1e-50	99.05	PREDICTED: transport protein particle 20 kDa subunit isoform X2 [Cucumis sativus...	[more]
gi\|743818138\|ref\|XP_011020593.1\|	3.2e-50	81.60	PREDICTED: transport protein particle 20 kDa subunit isoform X1 [Populus euphrat...	[more]
gi\|778670342\|ref\|XP_011649448.1\|	2.7e-49	98.11	PREDICTED: transport protein particle 20 kDa subunit isoform X1 [Cucumis sativus...	[more]
gi\|641845077\|gb\|KDO63966.1\|	4.6e-49	93.40	hypothetical protein CISIN_1g032720mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR006722	Sedlin
IPR011012	Longin-like_dom_sf

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006888	ER to Golgi vesicle-mediated transport
GO:0006810	transport

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0006810	transport
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C023193	MELO3C023193	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C023193T2	MELO3C023193T2-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C023193T2.cds1	MELO3C023193T2.cds1	CDS
MELO3C023193T2.cds2	MELO3C023193T2.cds2	CDS
MELO3C023193T2.cds3	MELO3C023193T2.cds3	CDS
MELO3C023193T2.cds4	MELO3C023193T2.cds4	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006722	Trafficking protein particle complex subunit 2	PANTHER	PTHR12403	MBP-1 INTERACTING PROTEIN-2A	coord: 1..106 score: 2.8
IPR006722	Trafficking protein particle complex subunit 2	PFAM	PF04628	Sedlin_N	coord: 9..108 score: 9.7
IPR011012	Longin-like domain	unknown	SSF64356	SNARE-like	coord: 1..106 score: 1.01
None	No IPR available	GENE3D	G3DSA:3.30.450.70		coord: 3..107 score: 6.5
None	No IPR available	PANTHER	PTHR12403:SF14	SUBFAMILY NOT NAMED	coord: 1..106 score: 2.8