MELO3C022957T2 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C022957T2
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Cytidine/deoxycytidylate deaminase family protein
Location	chr10 : 25253166 .. 25253741 (+)
Sequence length	480

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATGGTATGGCTCCCTAATCCCTTGGGCTTTTTTTTCTTTTTTCTTTTCTGTTTTTGGGAAGGAAAGTGTTGTTTATATATTATATTGAAAATTCCGCAGGTAGTAAATGCTGCGGTGATTGTTGATCCGTCAGTTACACAAGTAATTGCAAGTGCCTGTGATCATCATATTTCCTTCGAGAATGCTTCCACAAGCAATGTCAACGGAGAAACAAGCTTTGAAAAATCCCCAAAATCTCTTTGTTCTCATTTTGGCTCCAATGGATCCATTATCCATGGAACTTTTCCCTCAAGTTCCTCGTTGGAAAAACTGAAACAATCATGTGCAGATGTTTCCTGTTTGTACCCCTTGCGATGGGTTGACCAACCATTACCACATTCCTCAAATTCTTGTTGTTGGCACCCTCTAAGGCATGCTGCTATTGCAGCTATTGAATCTTCTGCTGCCCGAGATCGTCGTCTGTTCCCAACTCTTGAAACCACGGGTGATAAGTCAGTTGAAATGGAGCATATGGGCCCTCTGACAAAACTAGCAAAAAGACAGAAGATTGACCTTGACAATGTAAGCTAA

mRNA sequence

ATGGATATGGTAGTAAATGCTGCGGTGATTGTTGATCCGTCAGTTACACAAGTAATTGCAAGTGCCTGTGATCATCATATTTCCTTCGAGAATGCTTCCACAAGCAATGTCAACGGAGAAACAAGCTTTGAAAAATCCCCAAAATCTCTTTGTTCTCATTTTGGCTCCAATGGATCCATTATCCATGGAACTTTTCCCTCAAGTTCCTCGTTGGAAAAACTGAAACAATCATGTGCAGATGTTTCCTGTTTGTACCCCTTGCGATGGGTTGACCAACCATTACCACATTCCTCAAATTCTTGTTGTTGGCACCCTCTAAGGCATGCTGCTATTGCAGCTATTGAATCTTCTGCTGCCCGAGATCGTCGTCTGTTCCCAACTCTTGAAACCACGGGTGATAAGTCAGTTGAAATGGAGCATATGGGCCCTCTGACAAAACTAGCAAAAAGACAGAAGATTGACCTTGACAATGTAAGCTAA

Coding sequence (CDS)

ATGGATATGGTAGTAAATGCTGCGGTGATTGTTGATCCGTCAGTTACACAAGTAATTGCAAGTGCCTGTGATCATCATATTTCCTTCGAGAATGCTTCCACAAGCAATGTCAACGGAGAAACAAGCTTTGAAAAATCCCCAAAATCTCTTTGTTCTCATTTTGGCTCCAATGGATCCATTATCCATGGAACTTTTCCCTCAAGTTCCTCGTTGGAAAAACTGAAACAATCATGTGCAGATGTTTCCTGTTTGTACCCCTTGCGATGGGTTGACCAACCATTACCACATTCCTCAAATTCTTGTTGTTGGCACCCTCTAAGGCATGCTGCTATTGCAGCTATTGAATCTTCTGCTGCCCGAGATCGTCGTCTGTTCCCAACTCTTGAAACCACGGGTGATAAGTCAGTTGAAATGGAGCATATGGGCCCTCTGACAAAACTAGCAAAAAGACAGAAGATTGACCTTGACAATGTAAGCTAA

Protein sequence

MDMVVNAAVIVDPSVTQVIASACDHHISFENASTSNVNGETSFEKSPKSLCSHFGSNGSIIHGTFPSSSSLEKLKQSCADVSCLYPLRWVDQPLPHSSNSCCWHPLRHAAIAAIESSAARDRRLFPTLETTGDKSVEMEHMGPLTKLAKRQKIDLDNVS*

Homology

[Close]

BLAST of MELO3C022957T2 vs. TrEMBL
Match: A0A0A0KJ95_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G487680 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 1.0e-72
Identity = 140/156 (89.74%), Postives = 142/156 (91.03%), Query Frame = 1


Query: 4   VVNAAVIVDPSVTQVIASACDHHISFENASTSNVNGETSFEKSPKSLCSHFGSNGSIIHG 63
           VVNAAVIVDPSV QVIASACDHHISFENASTSN+NGETSFEK PKSL SHF S  SIIHG
Sbjct: 165 VVNAAVIVDPSVRQVIASACDHHISFENASTSNINGETSFEKCPKSLGSHFDSYESIIHG 224

Query: 64  TFPSSSSLEKLKQSCADVSCLYPLRWVDQPLPHSSNSCCWHPLRHAAIAAIESSAARDRR 123
           TFPSSSSL KLKQSCADVSCLYPLRW DQPLPHSSNSCCWHPLRHAAIAAIESSAARD R
Sbjct: 225 TFPSSSSLAKLKQSCADVSCLYPLRWFDQPLPHSSNSCCWHPLRHAAIAAIESSAARDCR 284

Query: 124 LFPTLETTGDKSVEMEHMGPLTKLAKRQKIDLDNVS 160
           LFPTLET GDKSVEMEHM  L KLAKRQKIDLDN +
Sbjct: 285 LFPTLETVGDKSVEMEHMDLLRKLAKRQKIDLDNAN 320

[Close]

BLAST of MELO3C022957T2 vs. TrEMBL
Match: M5VM52_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006403mg PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.4e-30
Identity = 83/159 (52.20%), Postives = 101/159 (63.52%), Query Frame = 1


Query: 2   DMVVNAAVIVDPSVTQVIASACDHHISFENASTSNVNGETSFEKSPKSLCSHFGSNGSII 61
           ++VVNAAVIVDPSV QVI +ACD   S   + T+ +  ETS  +  ++  SH  S+G + 
Sbjct: 165 NLVVNAAVIVDPSVKQVITTACDQTCS-SYSPTNKITLETSCCEKLEAFISHSDSDGVLN 224

Query: 62  HGTFPSSSSLEKLKQSCADVSCLYPLRWVDQPLPHSSNSCCWHPLRHAAIAAIESSAARD 121
           H T  S+S  +K KQ C  VSCLYP +W DQ    SS  C WHPLRHAAI AIESSAARD
Sbjct: 225 HQTVHSNSFPDKSKQLCTGVSCLYPWQWADQQSDMSS--CYWHPLRHAAIVAIESSAARD 284

Query: 122 RRLFPTLETTGDKSVEMEHM--GPLTKLAKRQKIDLDNV 159
           R LFP+L    DKS EM++M        AKRQK +  NV
Sbjct: 285 RYLFPSLGKIQDKSFEMDNMQSSSAGSPAKRQKTNSTNV 320

[Close]

BLAST of MELO3C022957T2 vs. TrEMBL
Match: W9SXZ5_9ROSA (tRNA-specific adenosine deaminase-like protein 3 OS=Morus notabilis GN=L484_012647 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.4e-24
Identity = 74/157 (47.13%), Postives = 93/157 (59.24%), Query Frame = 1


Query: 4   VVNAAVIVDPSVTQVIASACDHHISFENASTSNVNGETSFEKSPKSLCSHFGSNGSIIHG 63
           VVNAA+IVDPSV +VI+SACD   S++     NV     F K PK+  S+    G++   
Sbjct: 165 VVNAALIVDPSVKRVISSACDQTCSWDTPEDKNVLKTCCF-KQPKAFNSNTDCEGTVSCK 224

Query: 64  TFPSSSSLEKLKQSCADVSCLYPLRWVDQPLPHSSNSCCWHPLRHAAIAAIESSAARDRR 123
           T  S+    + KQ  A VSCL+P  W +Q       SC WHPLRHAAI AIESSAARDR 
Sbjct: 225 TLHSNGFPVEEKQLYAHVSCLFPWGWAEQQA--HMGSCRWHPLRHAAIVAIESSAARDRH 284

Query: 124 LFPTLETTGDKSVEMEHM--GPLTKLAKRQKIDLDNV 159
           LFP L    DK V+ +++    +  LAKRQK D + V
Sbjct: 285 LFPNLCDIQDKPVDTDNVQSTSMGSLAKRQKTDFEKV 318

[Close]

BLAST of MELO3C022957T2 vs. TrEMBL
Match: V4TR27_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020232mg PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-23
Identity = 74/157 (47.13%), Postives = 94/157 (59.87%), Query Frame = 1


Query: 4   VVNAAVIVDPSVTQVIASACDHHISFENASTSNVNGETSFEKSPKSLCSHFGSNGSIIHG 63
           +VNAAVIVDPS+ Q IASACD  I   + ST   N   S  + P+ L S   SNG   H 
Sbjct: 167 IVNAAVIVDPSIKQEIASACDQ-ICCCSISTEK-NSLESCSEQPEVLSSDLFSNGESNHT 226

Query: 64  TFPSSSSLEKLKQSCADVSCLYPLRWVDQPLPHSSNSCCWHPLRHAAIAAIESSAARDRR 123
           + P +    + ++S + VSCL P +W  +     + SC WHPLRHAAIAAI+SSAARDR 
Sbjct: 227 SLPPNDFPSETRKSYSGVSCLNPWQWAQEN--SHTTSCYWHPLRHAAIAAIQSSAARDRL 286

Query: 124 LFPTLETTGDKSVEMEHMGP--LTKLAKRQKIDLDNV 159
           LFP +   GDK   + ++ P  +   AKRQK DL NV
Sbjct: 287 LFPGMGHEGDKPNGVHNIQPTSIGTPAKRQKTDLANV 319

[Close]

BLAST of MELO3C022957T2 vs. TrEMBL
Match: I3SWE8_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.6e-23
Identity = 73/152 (48.03%), Postives = 93/152 (61.18%), Query Frame = 1


Query: 3   MVVNAAVIVDPSVTQVIASACDHHISFENASTSNVNGETSFEKSPKSLCSHFGSNGSIIH 62
           +VVNAAVIVDPS  Q+I+SA D   ++      N   + SF + P+ L SH  SN     
Sbjct: 131 LVVNAAVIVDPSAKQIISSARDQVFAW------NTCKDDSFSRKPELLSSHPISNRFDPD 190

Query: 63  GTFPSSSSLEKLKQSCADVSCLYPLRWVDQPLPHSSNSCCWHPLRHAAIAAIESSAARDR 122
               S+SS  +LKQ    V+CLYP +W +Q   HS +S  WHPLRHAAI AIESSAARDR
Sbjct: 191 KPLYSNSSCNQLKQRDTGVACLYPWQWTEQQ-SHSQSSHDWHPLRHAAIVAIESSAARDR 250

Query: 123 RLFPTLETTGDKSVEMEHMGP--LTKLAKRQK 153
            LFP+   + +K +EM+H  P   +  AKRQK
Sbjct: 251 CLFPSEGNSEEKYLEMDHENPSCTSFPAKRQK 275

[Close]

BLAST of MELO3C022957T2 vs. TAIR10
Match: AT5G24670.2 (AT5G24670.2 Cytidine/deoxycytidylate deaminase family protein)

HSP 1 Score: 84.0 bits (206), Expect = 9.4e-17
Identity = 62/152 (40.79%), Postives = 80/152 (52.63%), Query Frame = 1


Query: 4   VVNAAVIVDPSVTQVIASACDHHISFENASTSNVNGETSFEKSPKSLCSHFGSNGSIIHG 63
           +VNAAVIVDPSV ++IAS  D     +  ++S     TS E  P      F   G I   
Sbjct: 174 LVNAAVIVDPSVRRIIASETD-----QVYASSAPRDMTSAETRP------FEETGEIC-- 233

Query: 64  TFPSSSSLEKLKQSCADVSCLYPLRWVDQPLPHSSNSCC-WHPLRHAAIAAIESSAARDR 123
               + +LEK   S + +SCL P +W  QP  H + +C  WHPLRHA++ AIESS+ARDR
Sbjct: 234 ---LNDTLEKQNGSLSALSCLNPWQWSLQP--HDTENCSQWHPLRHASMVAIESSSARDR 293

Query: 124 RLFPTLETTGDKSVEMEHMGP--LTKLAKRQK 153
            LFP       K  + +H+ P      AK+QK
Sbjct: 294 NLFP----NPSKIFDQDHVPPSNTDSPAKKQK 303

[Close]

BLAST of MELO3C022957T2 vs. NCBI nr
Match: gi|659133556|ref|XP_008466788.1| (PREDICTED: probable inactive tRNA-specific adenosine deaminase-like protein 3 isoform X5 [Cucumis melo])

HSP 1 Score: 318.2 bits (814), Expect = 8.4e-84
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1


Query: 4   VVNAAVIVDPSVTQVIASACDHHISFENASTSNVNGETSFEKSPKSLCSHFGSNGSIIHG 63
           VVNAAVIVDPSVTQVIASACDHHISFENASTSNVNGETSFEKSPKSLCSHFGSNGSIIHG
Sbjct: 200 VVNAAVIVDPSVTQVIASACDHHISFENASTSNVNGETSFEKSPKSLCSHFGSNGSIIHG 259

Query: 64  TFPSSSSLEKLKQSCADVSCLYPLRWVDQPLPHSSNSCCWHPLRHAAIAAIESSAARDRR 123
           TFPSSSSLEKLKQSCADVSCLYPLRWVDQPLPHSSNSCCWHPLRHAAIAAIESSAARDRR
Sbjct: 260 TFPSSSSLEKLKQSCADVSCLYPLRWVDQPLPHSSNSCCWHPLRHAAIAAIESSAARDRR 319

Query: 124 LFPTLETTGDKSVEMEHMGPLTKLAKRQKIDLDNV 159
           LFPTLETTGDKSVEMEHMGPLTKLAKRQKIDLDNV
Sbjct: 320 LFPTLETTGDKSVEMEHMGPLTKLAKRQKIDLDNV 354

[Close]

BLAST of MELO3C022957T2 vs. NCBI nr
Match: gi|659133548|ref|XP_008466784.1| (PREDICTED: probable inactive tRNA-specific adenosine deaminase-like protein 3 isoform X1 [Cucumis melo])

HSP 1 Score: 317.0 bits (811), Expect = 1.9e-83
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 1


Query: 4   VVNAAVIVDPSVTQVIASACDHHISFENASTSNVNGETSFEKSPKSLCSHFGSNGSIIHG 63
           VVNAAVIVDPSVTQVIASACDHHISFENASTSNVNGETSFEKSPKSLCSHFGSNGSIIHG
Sbjct: 200 VVNAAVIVDPSVTQVIASACDHHISFENASTSNVNGETSFEKSPKSLCSHFGSNGSIIHG 259

Query: 64  TFPSSSSLEKLKQSCADVSCLYPLRWVDQPLPHSSNSCCWHPLRHAAIAAIESSAARDRR 123
           TFPSSSSLEKLKQSCADVSCLYPLRWVDQPLPHSSNSCCWHPLRHAAIAAIESSAARDRR
Sbjct: 260 TFPSSSSLEKLKQSCADVSCLYPLRWVDQPLPHSSNSCCWHPLRHAAIAAIESSAARDRR 319

Query: 124 LFPTLETTGDKSVEMEHMGPLTKLAKRQKIDLDNVS 160
           LFPTLETTGDKSVEMEHMGPLTKLAKRQKIDLDN +
Sbjct: 320 LFPTLETTGDKSVEMEHMGPLTKLAKRQKIDLDNAN 355

[Close]

BLAST of MELO3C022957T2 vs. NCBI nr
Match: gi|659133550|ref|XP_008466785.1| (PREDICTED: probable inactive tRNA-specific adenosine deaminase-like protein 3 isoform X2 [Cucumis melo])

HSP 1 Score: 317.0 bits (811), Expect = 1.9e-83
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 1


Query: 4   VVNAAVIVDPSVTQVIASACDHHISFENASTSNVNGETSFEKSPKSLCSHFGSNGSIIHG 63
           VVNAAVIVDPSVTQVIASACDHHISFENASTSNVNGETSFEKSPKSLCSHFGSNGSIIHG
Sbjct: 165 VVNAAVIVDPSVTQVIASACDHHISFENASTSNVNGETSFEKSPKSLCSHFGSNGSIIHG 224

Query: 64  TFPSSSSLEKLKQSCADVSCLYPLRWVDQPLPHSSNSCCWHPLRHAAIAAIESSAARDRR 123
           TFPSSSSLEKLKQSCADVSCLYPLRWVDQPLPHSSNSCCWHPLRHAAIAAIESSAARDRR
Sbjct: 225 TFPSSSSLEKLKQSCADVSCLYPLRWVDQPLPHSSNSCCWHPLRHAAIAAIESSAARDRR 284

Query: 124 LFPTLETTGDKSVEMEHMGPLTKLAKRQKIDLDNVS 160
           LFPTLETTGDKSVEMEHMGPLTKLAKRQKIDLDN +
Sbjct: 285 LFPTLETTGDKSVEMEHMGPLTKLAKRQKIDLDNAN 320

[Close]

BLAST of MELO3C022957T2 vs. NCBI nr
Match: gi|659133552|ref|XP_008466786.1| (PREDICTED: probable inactive tRNA-specific adenosine deaminase-like protein 3 isoform X3 [Cucumis melo])

HSP 1 Score: 317.0 bits (811), Expect = 1.9e-83
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 1


Query: 4   VVNAAVIVDPSVTQVIASACDHHISFENASTSNVNGETSFEKSPKSLCSHFGSNGSIIHG 63
           VVNAAVIVDPSVTQVIASACDHHISFENASTSNVNGETSFEKSPKSLCSHFGSNGSIIHG
Sbjct: 164 VVNAAVIVDPSVTQVIASACDHHISFENASTSNVNGETSFEKSPKSLCSHFGSNGSIIHG 223

Query: 64  TFPSSSSLEKLKQSCADVSCLYPLRWVDQPLPHSSNSCCWHPLRHAAIAAIESSAARDRR 123
           TFPSSSSLEKLKQSCADVSCLYPLRWVDQPLPHSSNSCCWHPLRHAAIAAIESSAARDRR
Sbjct: 224 TFPSSSSLEKLKQSCADVSCLYPLRWVDQPLPHSSNSCCWHPLRHAAIAAIESSAARDRR 283

Query: 124 LFPTLETTGDKSVEMEHMGPLTKLAKRQKIDLDNVS 160
           LFPTLETTGDKSVEMEHMGPLTKLAKRQKIDLDN +
Sbjct: 284 LFPTLETTGDKSVEMEHMGPLTKLAKRQKIDLDNAN 319

[Close]

BLAST of MELO3C022957T2 vs. NCBI nr
Match: gi|659133554|ref|XP_008466787.1| (PREDICTED: probable inactive tRNA-specific adenosine deaminase-like protein 3 isoform X4 [Cucumis melo])

HSP 1 Score: 317.0 bits (811), Expect = 1.9e-83
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 1


Query: 4   VVNAAVIVDPSVTQVIASACDHHISFENASTSNVNGETSFEKSPKSLCSHFGSNGSIIHG 63
           VVNAAVIVDPSVTQVIASACDHHISFENASTSNVNGETSFEKSPKSLCSHFGSNGSIIHG
Sbjct: 200 VVNAAVIVDPSVTQVIASACDHHISFENASTSNVNGETSFEKSPKSLCSHFGSNGSIIHG 259

Query: 64  TFPSSSSLEKLKQSCADVSCLYPLRWVDQPLPHSSNSCCWHPLRHAAIAAIESSAARDRR 123
           TFPSSSSLEKLKQSCADVSCLYPLRWVDQPLPHSSNSCCWHPLRHAAIAAIESSAARDRR
Sbjct: 260 TFPSSSSLEKLKQSCADVSCLYPLRWVDQPLPHSSNSCCWHPLRHAAIAAIESSAARDRR 319

Query: 124 LFPTLETTGDKSVEMEHMGPLTKLAKRQKIDLDNVS 160
           LFPTLETTGDKSVEMEHMGPLTKLAKRQKIDLDN +
Sbjct: 320 LFPTLETTGDKSVEMEHMGPLTKLAKRQKIDLDNAN 355

The following BLAST results are available for this feature:

BLAST of MELO3C022957T2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJ95_CUCSA	1.0e-72	89.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G487680 PE=4 SV=1	[more]
M5VM52_PRUPE	6.4e-30	52.20	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006403mg PE=4 SV=1	[more]
W9SXZ5_9ROSA	1.4e-24	47.13	tRNA-specific adenosine deaminase-like protein 3 OS=Morus notabilis GN=L484_0126...	[more]
V4TR27_9ROSI	1.2e-23	47.13	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020232mg PE=4 SV=1	[more]
I3SWE8_LOTJA	2.6e-23	48.03	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]

BLAST of MELO3C022957T2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G24670.2	9.4e-17	40.79	Cytidine/deoxycytidylate deaminase family protein	[more]

BLAST of MELO3C022957T2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659133556\|ref\|XP_008466788.1\|	8.4e-84	100.00	PREDICTED: probable inactive tRNA-specific adenosine deaminase-like protein 3 is...	[more]
gi\|659133548\|ref\|XP_008466784.1\|	1.9e-83	98.72	PREDICTED: probable inactive tRNA-specific adenosine deaminase-like protein 3 is...	[more]
gi\|659133550\|ref\|XP_008466785.1\|	1.9e-83	98.72	PREDICTED: probable inactive tRNA-specific adenosine deaminase-like protein 3 is...	[more]
gi\|659133552\|ref\|XP_008466786.1\|	1.9e-83	98.72	PREDICTED: probable inactive tRNA-specific adenosine deaminase-like protein 3 is...	[more]
gi\|659133554\|ref\|XP_008466787.1\|	1.9e-83	98.72	PREDICTED: probable inactive tRNA-specific adenosine deaminase-like protein 3 is...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C022957	MELO3C022957	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C022957T2	MELO3C022957T2-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C022957T2.cds1	MELO3C022957T2.cds1	CDS
MELO3C022957T2.cds2	MELO3C022957T2.cds2	CDS