MELO3C022889T2 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C022889T2
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	COBRA-like protein 7
Location	chr10 : 23656803 .. 23657421 (+)
Sequence length	315

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTAGTAGTGGCAGCAATTCTGCTGTTTCTGAGGGTGTAGAAGCATCTTTTATCTATGTGCGATTTGAGGCAGCTGCAGATGAGGTAACGGTTCTGTTTGCATTTACAATGAAATATTATGTCACTATTATTCTAAAACAAGCTGTCAGTTTTCCGTATAAGGAGCAGAGTGGTGTCACGACCAAAGTCTAGAAATCCTTGGAAGCATTATAGCTGGATGACTTATAGTTCTTGTAGTATCCATGACTAAATATTGTAGTTGTGTAGCTGAAACCTGTGCTGGAAGAAATTGAGAGCAGATCAACAAGGAAAGAATATACTGAGATCCTTGCAGAATGCCATAGACTCTACTGCGAGCAACGGCTTTCCCTGGTGAGCTCACTTAGTTTTTCTCCTACATTATAGCCTTCGGATGGATGGTGATGTGGACCTTATTCTCTCATGTTGAATGTTTTTTAGATAAAAAACATAGTGCATCAACGGATATCTGAGTTTTCCAAGAAGGAGGCTCTCCCATCATTGACTAGATCTGGATGTGGATATCTGATGCAGGTAATATTTTCTTACATTAAATGGTATTACGTAGATAAAAGTTAGGATGCCTCTTGTTCAGTAA

mRNA sequence

ATGCGTAGTAGTGGCAGCAATTCTGCTGTTTCTGAGGGTGTAGAAGCATCTTTTATCTATGTGCGATTTGAGGCAGCTGCAGATGAGCTGAAACCTGTGCTGGAAGAAATTGAGAGCAGATCAACAAGGAAAGAATATACTGAGATCCTTGCAGAATGCCATAGACTCTACTGCGAGCAACGGCTTTCCCTGATAAAAAACATAGTGCATCAACGGATATCTGAGTTTTCCAAGAAGGAGGCTCTCCCATCATTGACTAGATCTGGATGTGGATATCTGATGCAGATAAAAGTTAGGATGCCTCTTGTTCAGTAA

Coding sequence (CDS)

ATGCGTAGTAGTGGCAGCAATTCTGCTGTTTCTGAGGGTGTAGAAGCATCTTTTATCTATGTGCGATTTGAGGCAGCTGCAGATGAGCTGAAACCTGTGCTGGAAGAAATTGAGAGCAGATCAACAAGGAAAGAATATACTGAGATCCTTGCAGAATGCCATAGACTCTACTGCGAGCAACGGCTTTCCCTGATAAAAAACATAGTGCATCAACGGATATCTGAGTTTTCCAAGAAGGAGGCTCTCCCATCATTGACTAGATCTGGATGTGGATATCTGATGCAGATAAAAGTTAGGATGCCTCTTGTTCAGTAA

Protein sequence

MRSSGSNSAVSEGVEASFIYVRFEAAADELKPVLEEIESRSTRKEYTEILAECHRLYCEQRLSLIKNIVHQRISEFSKKEALPSLTRSGCGYLMQIKVRMPLVQ*

Homology

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BLAST of MELO3C022889T2 vs. TrEMBL
Match: A0A0A0KTV8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G630720 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 5.1e-44
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 1


Query: 3   SSGSNSAVSEGVEASFIYVRFEAAADELKPVLEEIESRSTRKEYTEILAECHRLYCEQRL 62
           SSGSNSAVSEGVEASFIYVRFEAAADELKPVLEEIESRSTRKEYTEILAECHRLYCEQRL
Sbjct: 238 SSGSNSAVSEGVEASFIYVRFEAAADELKPVLEEIESRSTRKEYTEILAECHRLYCEQRL 297

Query: 63  SLIKNIVHQRISEFSKKEALPSLTRSGCGYLMQI 97
           SLIKNIVHQRISEFSKKEALPSLTRSGCGYLMQ+
Sbjct: 298 SLIKNIVHQRISEFSKKEALPSLTRSGCGYLMQV 331

[Close]

BLAST of MELO3C022889T2 vs. TrEMBL
Match: M5VWN3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001686mg PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 7.9e-37
Identity = 78/94 (82.98%), Postives = 88/94 (93.62%), Query Frame = 1


Query: 3   SSGSNSAVSEGVEASFIYVRFEAAADELKPVLEEIESRSTRKEYTEILAECHRLYCEQRL 62
           S GS ++VSEGVEAS IYVRF+AAA ELKPVLEEIESRS+RKEYT+ILAECH+LYCEQRL
Sbjct: 268 SGGSKASVSEGVEASVIYVRFKAAASELKPVLEEIESRSSRKEYTQILAECHKLYCEQRL 327

Query: 63  SLIKNIVHQRISEFSKKEALPSLTRSGCGYLMQI 97
           SL++ IVHQRISEF+KKEALPSLTRSGC YLMQ+
Sbjct: 328 SLVRGIVHQRISEFAKKEALPSLTRSGCAYLMQV 361

[Close]

BLAST of MELO3C022889T2 vs. TrEMBL
Match: A0A078C9W6_BRANA (BnaC06g34370D protein OS=Brassica napus GN=BnaC06g34370D PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 5.1e-36
Identity = 76/94 (80.85%), Postives = 86/94 (91.49%), Query Frame = 1


Query: 3   SSGSNSAVSEGVEASFIYVRFEAAADELKPVLEEIESRSTRKEYTEILAECHRLYCEQRL 62
           + G+ ++VSEGVEAS IYVRF+AAA ELKPVLEEIESRS RKEY +ILAECHRLYCEQRL
Sbjct: 278 TDGNKASVSEGVEASVIYVRFKAAASELKPVLEEIESRSARKEYVQILAECHRLYCEQRL 337

Query: 63  SLIKNIVHQRISEFSKKEALPSLTRSGCGYLMQI 97
           SL+K IVHQR+S+FSKKEALPSLTRSGC YLMQ+
Sbjct: 338 SLVKGIVHQRVSDFSKKEALPSLTRSGCAYLMQV 371

[Close]

BLAST of MELO3C022889T2 vs. TrEMBL
Match: V4K9U4_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10018146mg PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 5.1e-36
Identity = 76/94 (80.85%), Postives = 86/94 (91.49%), Query Frame = 1


Query: 3   SSGSNSAVSEGVEASFIYVRFEAAADELKPVLEEIESRSTRKEYTEILAECHRLYCEQRL 62
           + G+ ++VSEGVEAS IYVRF+AAA ELKPVLEEIESRS RKEY +ILAECHRLYCEQRL
Sbjct: 271 TDGNKASVSEGVEASVIYVRFKAAASELKPVLEEIESRSARKEYVQILAECHRLYCEQRL 330

Query: 63  SLIKNIVHQRISEFSKKEALPSLTRSGCGYLMQI 97
           SL+K IVHQR+S+FSKKEALPSLTRSGC YLMQ+
Sbjct: 331 SLVKGIVHQRVSDFSKKEALPSLTRSGCAYLMQV 364

[Close]

BLAST of MELO3C022889T2 vs. TrEMBL
Match: R0IKA2_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10011342mg PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 5.1e-36
Identity = 76/94 (80.85%), Postives = 86/94 (91.49%), Query Frame = 1


Query: 3   SSGSNSAVSEGVEASFIYVRFEAAADELKPVLEEIESRSTRKEYTEILAECHRLYCEQRL 62
           + G+ ++VSEGVEAS IYVRF+AAA ELKPVLEEIESRS RKEY +ILAECHRLYCEQRL
Sbjct: 271 ADGNKTSVSEGVEASVIYVRFKAAASELKPVLEEIESRSARKEYVQILAECHRLYCEQRL 330

Query: 63  SLIKNIVHQRISEFSKKEALPSLTRSGCGYLMQI 97
           SL+K IVHQR+S+FSKKEALPSLTRSGC YLMQ+
Sbjct: 331 SLVKGIVHQRVSDFSKKEALPSLTRSGCAYLMQV 364

[Close]

BLAST of MELO3C022889T2 vs. TAIR10
Match: AT1G73430.1 (AT1G73430.1 sec34-like family protein)

HSP 1 Score: 157.5 bits (397), Expect = 4.4e-39
Identity = 75/94 (79.79%), Postives = 86/94 (91.49%), Query Frame = 1


Query: 3   SSGSNSAVSEGVEASFIYVRFEAAADELKPVLEEIESRSTRKEYTEILAECHRLYCEQRL 62
           + G+ ++VSEGVEAS IYVRF+AAA+ELKPVLEEIESRS RKEY +ILAECHRLYCEQRL
Sbjct: 271 TGGNKTSVSEGVEASVIYVRFKAAANELKPVLEEIESRSARKEYVQILAECHRLYCEQRL 330

Query: 63  SLIKNIVHQRISEFSKKEALPSLTRSGCGYLMQI 97
           SL+K IVHQR+S+F+KKEALPSLTRSGC YLMQ+
Sbjct: 331 SLVKGIVHQRVSDFAKKEALPSLTRSGCAYLMQV 364

[Close]

BLAST of MELO3C022889T2 vs. NCBI nr
Match: gi|659121240|ref|XP_008460560.1| (PREDICTED: conserved oligomeric Golgi complex subunit 3 [Cucumis melo])

HSP 1 Score: 188.7 bits (478), Expect = 5.1e-45
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 1


Query: 1   MRSSGSNSAVSEGVEASFIYVRFEAAADELKPVLEEIESRSTRKEYTEILAECHRLYCEQ 60
           MRSSGSNSAVSEGVEASFIYVRFEAAADELKPVLEEIESRSTRKEYTEILAECHRLYCEQ
Sbjct: 267 MRSSGSNSAVSEGVEASFIYVRFEAAADELKPVLEEIESRSTRKEYTEILAECHRLYCEQ 326

Query: 61  RLSLIKNIVHQRISEFSKKEALPSLTRSGCGYLMQI 97
           RLSLIKNIVHQRISEFSKKEALPSLTRSGCGYLMQ+
Sbjct: 327 RLSLIKNIVHQRISEFSKKEALPSLTRSGCGYLMQV 362

[Close]

BLAST of MELO3C022889T2 vs. NCBI nr
Match: gi|449449220|ref|XP_004142363.1| (PREDICTED: conserved oligomeric Golgi complex subunit 3 [Cucumis sativus])

HSP 1 Score: 184.9 bits (468), Expect = 7.3e-44
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 1


Query: 3   SSGSNSAVSEGVEASFIYVRFEAAADELKPVLEEIESRSTRKEYTEILAECHRLYCEQRL 62
           SSGSNSAVSEGVEASFIYVRFEAAADELKPVLEEIESRSTRKEYTEILAECHRLYCEQRL
Sbjct: 270 SSGSNSAVSEGVEASFIYVRFEAAADELKPVLEEIESRSTRKEYTEILAECHRLYCEQRL 329

Query: 63  SLIKNIVHQRISEFSKKEALPSLTRSGCGYLMQI 97
           SLIKNIVHQRISEFSKKEALPSLTRSGCGYLMQ+
Sbjct: 330 SLIKNIVHQRISEFSKKEALPSLTRSGCGYLMQV 363

[Close]

BLAST of MELO3C022889T2 vs. NCBI nr
Match: gi|700197192|gb|KGN52369.1| (hypothetical protein Csa_5G630720 [Cucumis sativus])

HSP 1 Score: 184.9 bits (468), Expect = 7.3e-44
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 1


Query: 3   SSGSNSAVSEGVEASFIYVRFEAAADELKPVLEEIESRSTRKEYTEILAECHRLYCEQRL 62
           SSGSNSAVSEGVEASFIYVRFEAAADELKPVLEEIESRSTRKEYTEILAECHRLYCEQRL
Sbjct: 238 SSGSNSAVSEGVEASFIYVRFEAAADELKPVLEEIESRSTRKEYTEILAECHRLYCEQRL 297

Query: 63  SLIKNIVHQRISEFSKKEALPSLTRSGCGYLMQI 97
           SLIKNIVHQRISEFSKKEALPSLTRSGCGYLMQ+
Sbjct: 298 SLIKNIVHQRISEFSKKEALPSLTRSGCGYLMQV 331

[Close]

BLAST of MELO3C022889T2 vs. NCBI nr
Match: gi|645274013|ref|XP_008242149.1| (PREDICTED: conserved oligomeric Golgi complex subunit 3 [Prunus mume])

HSP 1 Score: 161.0 bits (406), Expect = 1.1e-36
Identity = 78/94 (82.98%), Postives = 88/94 (93.62%), Query Frame = 1


Query: 3   SSGSNSAVSEGVEASFIYVRFEAAADELKPVLEEIESRSTRKEYTEILAECHRLYCEQRL 62
           S GS ++VSEGVEAS IYVRF+AAA ELKPVLEEIESRS+RKEYT+ILAECH+LYCEQRL
Sbjct: 268 SGGSKASVSEGVEASVIYVRFKAAASELKPVLEEIESRSSRKEYTQILAECHKLYCEQRL 327

Query: 63  SLIKNIVHQRISEFSKKEALPSLTRSGCGYLMQI 97
           SL++ IVHQRISEF+KKEALPSLTRSGC YLMQ+
Sbjct: 328 SLVRGIVHQRISEFAKKEALPSLTRSGCAYLMQV 361

[Close]

BLAST of MELO3C022889T2 vs. NCBI nr
Match: gi|595817892|ref|XP_007204277.1| (hypothetical protein PRUPE_ppa001686mg [Prunus persica])

HSP 1 Score: 161.0 bits (406), Expect = 1.1e-36
Identity = 78/94 (82.98%), Postives = 88/94 (93.62%), Query Frame = 1


Query: 3   SSGSNSAVSEGVEASFIYVRFEAAADELKPVLEEIESRSTRKEYTEILAECHRLYCEQRL 62
           S GS ++VSEGVEAS IYVRF+AAA ELKPVLEEIESRS+RKEYT+ILAECH+LYCEQRL
Sbjct: 268 SGGSKASVSEGVEASVIYVRFKAAASELKPVLEEIESRSSRKEYTQILAECHKLYCEQRL 327

Query: 63  SLIKNIVHQRISEFSKKEALPSLTRSGCGYLMQI 97
           SL++ IVHQRISEF+KKEALPSLTRSGC YLMQ+
Sbjct: 328 SLVRGIVHQRISEFAKKEALPSLTRSGCAYLMQV 361

The following BLAST results are available for this feature:

BLAST of MELO3C022889T2 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTV8_CUCSA	5.1e-44	98.94	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G630720 PE=4 SV=1	[more]
M5VWN3_PRUPE	7.9e-37	82.98	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001686mg PE=4 SV=1	[more]
A0A078C9W6_BRANA	5.1e-36	80.85	BnaC06g34370D protein OS=Brassica napus GN=BnaC06g34370D PE=4 SV=1	[more]
V4K9U4_EUTSA	5.1e-36	80.85	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10018146mg PE=4 SV=1	[more]
R0IKA2_9BRAS	5.1e-36	80.85	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10011342mg PE=4 SV=1	[more]

BLAST of MELO3C022889T2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73430.1	4.4e-39	79.79	sec34-like family protein	[more]

BLAST of MELO3C022889T2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121240\|ref\|XP_008460560.1\|	5.1e-45	98.96	PREDICTED: conserved oligomeric Golgi complex subunit 3 [Cucumis melo]	[more]
gi\|449449220\|ref\|XP_004142363.1\|	7.3e-44	98.94	PREDICTED: conserved oligomeric Golgi complex subunit 3 [Cucumis sativus]	[more]
gi\|700197192\|gb\|KGN52369.1\|	7.3e-44	98.94	hypothetical protein Csa_5G630720 [Cucumis sativus]	[more]
gi\|645274013\|ref\|XP_008242149.1\|	1.1e-36	82.98	PREDICTED: conserved oligomeric Golgi complex subunit 3 [Prunus mume]	[more]
gi\|595817892\|ref\|XP_007204277.1\|	1.1e-36	82.98	hypothetical protein PRUPE_ppa001686mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR007265	COG_su3

Vocabulary: **Cellular Component**
Term	Definition
GO:0005801	cis-Golgi network
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006886	intracellular protein transport

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016049	cell growth
biological_process	GO:0010215	cellulose microfibril organization
cellular_component	GO:0005801	cis-Golgi network
cellular_component	GO:0016020	membrane
cellular_component	GO:0031225	anchored component of membrane
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C022889	MELO3C022889	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C022889T2	MELO3C022889T2-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C022889T2.cds1	MELO3C022889T2.cds1	CDS
MELO3C022889T2.cds2	MELO3C022889T2.cds2	CDS
MELO3C022889T2.cds3	MELO3C022889T2.cds3	CDS
MELO3C022889T2.cds4	MELO3C022889T2.cds4	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007265	Conserved oligomeric Golgi complex, subunit 3	PANTHER	PTHR13302	CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3	coord: 1..96 score: 3.1