MELO3C022864T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C022864T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionGibberellin-regulated protein 5
Locationchr9 : 13449796 .. 13449977 (-)
Sequence length182
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTGCAAGCCGAAATGCAGTTATCGATGCTCGGCAACATCGCACAGGAAGCCATGCATGTTCTTCTGCCAAAAATGTTGTGCAAAATGTCTGTGTGTACCTCCAGGGACATATGGAAACAAGCAAGAATGTCCATGCTACAATAACTGGAAAACTCAGCAAGGAGGTCCCAAATGCCCTTAA

mRNA sequence

ATTGCAAGCCGAAATGCAGTTATCGATGCTCGGCAACATCGCACAGGAAGCCATGCATGTTCTTCTGCCAAAAATGTTGTGCAAAATGTCTGTGTGTACCTCCAGGGACATATGGAAACAAGCAAGAATGTCCATGCTACAATAACTGGAAAACTCAGCAAGGAGGTCCCAAATGCCCTTAA

Coding sequence (CDS)

ATTGCAAGCCGAAATGCAGTTATCGATGCTCGGCAACATCGCACAGGAAGCCATGCATGTTCTTCTGCCAAAAATGTTGTGCAAAATGTCTGTGTGTACCTCCAGGGACATATGGAAACAAGCAAGAATGTCCATGCTACAATAACTGGAAAACTCAGCAAGGAGGTCCCAAATGCCCTTAA

Protein sequence

IASRNAVIDARQHRTGSHACSSAKNVVQNVCVYLQGHMETSKNVHATITGKLSKEVPNAL
Homology
[Close]
BLAST of MELO3C022864T1 vs. TrEMBL
Match: W9SM78_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021620 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-06
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1 

Query: 2   ASRNAVIDARQHRTGSHACSSAKNVVQNVCVYLQGHMETSKNVHATITGKLSKEVPNA 60
           A R+ +I AR+  T SH CSSA NV  N  V+ Q HM+   +VHAT TGK  +E+PNA
Sbjct: 56  AQRHVLIGARRLITKSHVCSSATNVATNAFVFPQAHMDIRTSVHATTTGKPREELPNA 113

[Close]
BLAST of MELO3C022864T1 vs. TrEMBL
Match: A0A061GUF5_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_040807 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-06
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 1 

Query: 4  RNAVIDARQHRTGSHACSSAKNVVQNVCVYLQGHMETSKNVHATITGKLSKEVPNAL 61
          R+A+ DA    T SHACSS ++VV + CV L  HMET+   HAT TG+  +E PNAL
Sbjct: 20 RDALPDALLQHTRSHACSSVRSVVPSACVCLLAHMETNNIAHATTTGRPREEGPNAL 76

[Close]
BLAST of MELO3C022864T1 vs. NCBI nr
Match: gi|703142615|ref|XP_010107798.1| (hypothetical protein L484_021620 [Morus notabilis])

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-06
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1 

Query: 2   ASRNAVIDARQHRTGSHACSSAKNVVQNVCVYLQGHMETSKNVHATITGKLSKEVPNA 60
           A R+ +I AR+  T SH CSSA NV  N  V+ Q HM+   +VHAT TGK  +E+PNA
Sbjct: 56  AQRHVLIGARRLITKSHVCSSATNVATNAFVFPQAHMDIRTSVHATTTGKPREELPNA 113

[Close]
BLAST of MELO3C022864T1 vs. NCBI nr
Match: gi|590584421|ref|XP_007015173.1| (Uncharacterized protein TCM_040807 [Theobroma cacao])

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-06
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 1 

Query: 4  RNAVIDARQHRTGSHACSSAKNVVQNVCVYLQGHMETSKNVHATITGKLSKEVPNAL 61
          R+A+ DA    T SHACSS ++VV + CV L  HMET+   HAT TG+  +E PNAL
Sbjct: 20 RDALPDALLQHTRSHACSSVRSVVPSACVCLLAHMETNNIAHATTTGRPREEGPNAL 76

The following BLAST results are available for this feature:
BLAST of MELO3C022864T1 vs. TrEMBL
Match NameE-valueIdentityDescription
W9SM78_9ROSA1.1e-0651.72Uncharacterized protein OS=Morus notabilis GN=L484_021620 PE=4 SV=1[more]
A0A061GUF5_THECC1.1e-0652.63Uncharacterized protein OS=Theobroma cacao GN=TCM_040807 PE=4 SV=1[more]
BLAST of MELO3C022864T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|703142615|ref|XP_010107798.1|1.6e-0651.72hypothetical protein L484_021620 [Morus notabilis][more]
gi|590584421|ref|XP_007015173.1|1.6e-0652.63Uncharacterized protein TCM_040807 [Theobroma cacao][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C022864MELO3C022864gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C022864T1MELO3C022864T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C022864T1.cds1MELO3C022864T1.cds1CDS