MELO3C021825T2 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C021825T2
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Cleavage and polyadenylation specificity factor subunit 3-II
Location	chr11 : 6837743 .. 6841865 (+)
Sequence length	1233

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTCAGGTTTGACTGTTCAAGCTAATATGTACTATAAAATGCTCATCAGTTGGACAAGCCAGAAGGTTAAAGAGACGTACACTACAAGGAATGCATTTGACTTTAAAAACGGTACTGTTTCTTCACATGTTTCAAGTTTTCAGGATTGCAAACAATTGTTTCTTAAAAATACGGCCTTAAAATAAATGTTTTTATGTTGAGGTTATTTGTTTACAAGTGAAGTGATGCGGGTACCCCTATTGAAGTGGTAGGTGGGGACATGTTTTGAATATCGAGGTATTTTACCTTAGCAATGAATAAATGAAGAGGAAATTAAGTGGCATCTTTGGAAGGGATTTTTTTATGCCAAAATTACTTTCCTCTTCATGTATTCATTGTTAAGGTACGATGCTTCAAAACTCAATAAATGTCCCAAGCTGCCAATTGCCCAAATCAGTTTTGTTTTGTTTTAAGACAATGATGCTTGCTGTAGAGTGATTTTGATAAAATCCAAACACTGACGGAATTCTAGGCATATTAGATGGGAGGTAATTTTAGTACGAGTTTGCGTAGGAATTGCTTCAGGATCAGTTACCCAGTGTAATGCCTTTAGAAATCGGAAAATTAATATTTAAAAGTTTAAATGTGTGGAATCAAGCATTGAAGTTATTATTAAATGCCCCTTTTATAAAATCACGCATTGCTAAAAACACTTATTCTAAAGTCTCTATACCAAACACTGACTTTATGACTTTTTATAAACTCTAAACTCTAAGATTTATTTTGTTTTTCTGGTCTGTTACTATGTTTCTCTTTGGGTTGGATTTTGAAGACCTTTTGTAATTATTCTCTAAGAATGATTTTGCATAGTTGGAACCCCTTGTACTAGGTCAAGCTCCATTTTGTGGTCTTGCCCTGTGTGTTCTTGCATTTTTTCTCAATGAAAGTGGTTTTACATTAAAAATAATCACGTTTATAAGTTTAAATTGAATCATGTTCTTAAATCACTAAGTACTATAAGTAAATTTGGACATAGAACACATTTCTCCCAATTCTGTGGGTGACTTTTGTTGGATTCAAAGTTTGATTACACATCACGTGTGTCATAAGACATTTTAGCCACTGACGAAGTGCTTATATAAATTATGAACTTGGGCTACATGTTGCAGTTCAAAAGTTCGACCGTTCTATGATTGATGCTCCTGGACCTTGTGTTCTCTTTGCTACACCGGGGATGATCAGTAGTGGGTTTTCTCTTGAAGTTTTTAAGCGTTGGGCACCTTCTAAATTGAATCTGATCACATTACCTGGGTATTGACTACTCTCTTTTGGCTAATGCTTTGCCTTCATTTTTCTAGTGCAGGCTGGTTCTTTGATAAACCATAAAACCATTCAATTTCTGTGACTGAGTTTTTTCTTTCACTTTTGCAGCACTTTTTTTTTTTCCTTTTTCTTTTTTCTTTTCTCTTACTTATTTTGATTATTCTAAAATTTGCTTATGTTATTCATAGTTTGTGTTTGGTCATGTATAGGATGGTCTTACATCCAAGCATAATGTGAATTTGAAATTGCTATCTGTAAGCCGTATTACTTTATCCCATGTAGGTATTGTGTGGCTGGAACTGTTGGGCACAAGTTAATGTCAGGCAAACCCACCAAAATTGATCTGGACAAGGACACTCAAATTGATGTGCAATGCCAGGCTAGTATCTACCTGACCTTGTGTTGTTGTGTTTTTCTTTTAAATATTATTATTCGTTTATTAGAATCATTAATCCTCAGCTTTCCTTAACTGGGTGAAAATTGCATCTCAATTTGGATTTTAATGTTTCTTAGAGGTTCACAACTTGGTAGCTTTTGATGCTTCACAAAGTGTAATATCGCCTTTTTGGACTACTATTCTCCTAAGGAAAAACTAGGAAGACACGACTAAGTTACAATGAATGGTGCAATGGTGCTAACATTCTTGTATTTCAGATTAAAGACGTTTTCAACTTCTTTGTTTTTGTCCTCAAGAAAGTTAAAAATTATCACAACCGCTCAAATTTATATGTTCCACTTTTTTACCCTCAGATTTGAAGCTTGTCCACATGGGAAGACTTGTGAACGAAACATTTGATCAATTACATGAACCCGCTTTGGAAGATAATGAAACATTGGAAATCAAATTAGTTGGGATCATTCTATGGGTTTGGATTAAATTTAATATTTTTACAATCTTACCGATGTAATTATTACTAAACTTAGAAGCTTAAAAGCTTATGTATCAAACTTGACTTTCTATTAATTAGTAATTACTAATAAACTGATAAGATAGGAAGCTGTGCCTCAAGCAATCTCATAACGATCCTATCCACAAAGGGCTTTGTTCTGAAAAATTCTTTAGTTCCTTTCAAAACCATGTTTTGAGAGAATCACTTTCACTCCATTTACCGACAAAAGGTGAGGAACAACTTTTAAACAAAGCCCCCCAAAATCTGCGTTAATTCTGAATCGTACTAAAAATCAGTAGCTTAAAAGCTTATGTCAACGAGGTTGGTTAAATTAAATCTTTTTAATAATTCCAATATTTTTCTAAGCTTAGAAATTAACACGAGACTCAATAAGTGAACTCAAAATGTGACTCTGGATTTGAAAAGATGTGACTCTGTAGTTTGAACACAGATGTTCTATTTGATACCAATTTAGATCGTATATATATGTGTGCGTCTATATACATATGTATGTGTGCATATATACATGCATACATGCTATGCATATTTATATGATGACAAGGAATATAATACAGTGTCATCTTTTGTTGGAGGGTAACAAATAAATAGAAAAACTCAAAAATAAAGAACAGTAGCATATAAGGGATACAATATGGACGTTGAGAAATAGATGAAAGGCCTCTTTTTGAGTATGTGCGTGAGAATGAGAGATGAGGTGGTGATAATTGGCAAACAAATCAATATATATTTTATTATTCTATTATTGTTTTATTTTTAAATGAACAAACAACTTAGGCAACTGGATGAATTTAGATATGTGAATGAAAATGGGACTAAAATATGCATAAAATGCTGAATGTGGAAAACTCTAGCTCAAGTACAGGGAATGTTTCTGGATTTAACCGATATTTTAAGCATCAATATTAAAGGTGACTTGGCTGAACATTTTTTTTTTCTTTTATTATGCATGCATTCTTTCTACAGTCATGTATTGGTTGTATTCTATTTTCCTTACTATATACATGTTTAATTCCAGGTTCACCAACTGGCATTCAGCCCACATACTGATTCCAAAGGAATTATGGATCTTGTGAAATTCCTTAGTCCCAAGCATGTGATTCTTGTACATGGAGAGAAACCTAAAATGGCTGTTTTAAAGGAGAGGATTCATTCCGAACTGGGAATCCCATGTCATGATCCAGCAAATAATGAAACTGTATCCATTTCTTCAACACTTTCTATCAAAGCAGAAGCCTCGAGCATGTTTATTCAGAGTTGTTCTACTCCTAATTTTAAGTTCTTAAAAAGAAACTTGATTGATAAGATTGATCCTGATTTGAAAGATTTAAGTTACAAAGCAGTAAGGACTTCAAACATGCTTATACGCGAATGCTCAAATCCCCATTTCAAGCATTTGAATAGAAATTTGGACGCCAAGTTTGATTCTAGTTTAAGTTGTGGTCCAGAGCTACAGGTAAGTGATGATAGAGTGAATGAAGGGATCTTGGTGATGGAAAATGGTAAAAAAACCAAGGCATTACATCAGGATGAACTATTGCTACTCTTGGGAGAACAAGAGCATGAGGTCAGGTTTGCTCATTGTAGACCCATATATTTTGGTAGCTTAGATGAGATCCATGTTATGGATAGCTTATCTAGAAAATCTTTATGGCTTTCCCAGCTATCTTTTAAGCTTTCAACCGAACTATCAGACAGGAATGTTCAAAATCTTGGGGAGTATCTTCAAGTTGAATCAATTACACTGTCCATTTGCTCAAAGGAGAATTGCCCTTACAGAACTACAAATAGAATTGAAAATGAATCCTCTGCTATGGTATTTTGTTGCTGTAGTTGGCTAGTTGCAGATGAAATCCTTGCATGGAAAATCATTTCTATCTTGGAGAAACATGATCTCGGTTCAACATAA

mRNA sequence

ATGCTTTCAGGTTTGACTGTTCAAGCTAATATGTACTATAAAATGCTCATCAGTTGGACAAGCCAGAAGGTTAAAGAGACGTACACTACAAGGAATGCATTTGACTTTAAAAACGTTCAAAAGTTCGACCGTTCTATGATTGATGCTCCTGGACCTTGTGTTCTCTTTGCTACACCGGGGATGATCAGTAGTGGGTTTTCTCTTGAAGTTTTTAAGCGTTGGGCACCTTCTAAATTGAATCTGATCACATTACCTGGGTATTGTGTGGCTGGAACTGTTGGGCACAAGTTAATGTCAGGCAAACCCACCAAAATTGATCTGGACAAGGACACTCAAATTGATGTTCACCAACTGGCATTCAGCCCACATACTGATTCCAAAGGAATTATGGATCTTGTGAAATTCCTTAGTCCCAAGCATGTGATTCTTGTACATGGAGAGAAACCTAAAATGGCTGTTTTAAAGGAGAGGATTCATTCCGAACTGGGAATCCCATGTCATGATCCAGCAAATAATGAAACTGTATCCATTTCTTCAACACTTTCTATCAAAGCAGAAGCCTCGAGCATGTTTATTCAGAGTTGTTCTACTCCTAATTTTAAGTTCTTAAAAAGAAACTTGATTGATAAGATTGATCCTGATTTGAAAGATTTAAGTTACAAAGCAGTAAGGACTTCAAACATGCTTATACGCGAATGCTCAAATCCCCATTTCAAGCATTTGAATAGAAATTTGGACGCCAAGTTTGATTCTAGTTTAAGTTGTGGTCCAGAGCTACAGGTAAGTGATGATAGAGTGAATGAAGGGATCTTGGTGATGGAAAATGGTAAAAAAACCAAGGCATTACATCAGGATGAACTATTGCTACTCTTGGGAGAACAAGAGCATGAGGTCAGGTTTGCTCATTGTAGACCCATATATTTTGGTAGCTTAGATGAGATCCATGTTATGGATAGCTTATCTAGAAAATCTTTATGGCTTTCCCAGCTATCTTTTAAGCTTTCAACCGAACTATCAGACAGGAATGTTCAAAATCTTGGGGAGTATCTTCAAGTTGAATCAATTACACTGTCCATTTGCTCAAAGGAGAATTGCCCTTACAGAACTACAAATAGAATTGAAAATGAATCCTCTGCTATGGTATTTTGTTGCTGTAGTTGGCTAGTTGCAGATGAAATCCTTGCATGGAAAATCATTTCTATCTTGGAGAAACATGATCTCGGTTCAACATAA

Coding sequence (CDS)

ATGCTTTCAGGTTTGACTGTTCAAGCTAATATGTACTATAAAATGCTCATCAGTTGGACAAGCCAGAAGGTTAAAGAGACGTACACTACAAGGAATGCATTTGACTTTAAAAACGTTCAAAAGTTCGACCGTTCTATGATTGATGCTCCTGGACCTTGTGTTCTCTTTGCTACACCGGGGATGATCAGTAGTGGGTTTTCTCTTGAAGTTTTTAAGCGTTGGGCACCTTCTAAATTGAATCTGATCACATTACCTGGGTATTGTGTGGCTGGAACTGTTGGGCACAAGTTAATGTCAGGCAAACCCACCAAAATTGATCTGGACAAGGACACTCAAATTGATGTTCACCAACTGGCATTCAGCCCACATACTGATTCCAAAGGAATTATGGATCTTGTGAAATTCCTTAGTCCCAAGCATGTGATTCTTGTACATGGAGAGAAACCTAAAATGGCTGTTTTAAAGGAGAGGATTCATTCCGAACTGGGAATCCCATGTCATGATCCAGCAAATAATGAAACTGTATCCATTTCTTCAACACTTTCTATCAAAGCAGAAGCCTCGAGCATGTTTATTCAGAGTTGTTCTACTCCTAATTTTAAGTTCTTAAAAAGAAACTTGATTGATAAGATTGATCCTGATTTGAAAGATTTAAGTTACAAAGCAGTAAGGACTTCAAACATGCTTATACGCGAATGCTCAAATCCCCATTTCAAGCATTTGAATAGAAATTTGGACGCCAAGTTTGATTCTAGTTTAAGTTGTGGTCCAGAGCTACAGGTAAGTGATGATAGAGTGAATGAAGGGATCTTGGTGATGGAAAATGGTAAAAAAACCAAGGCATTACATCAGGATGAACTATTGCTACTCTTGGGAGAACAAGAGCATGAGGTCAGGTTTGCTCATTGTAGACCCATATATTTTGGTAGCTTAGATGAGATCCATGTTATGGATAGCTTATCTAGAAAATCTTTATGGCTTTCCCAGCTATCTTTTAAGCTTTCAACCGAACTATCAGACAGGAATGTTCAAAATCTTGGGGAGTATCTTCAAGTTGAATCAATTACACTGTCCATTTGCTCAAAGGAGAATTGCCCTTACAGAACTACAAATAGAATTGAAAATGAATCCTCTGCTATGGTATTTTGTTGCTGTAGTTGGCTAGTTGCAGATGAAATCCTTGCATGGAAAATCATTTCTATCTTGGAGAAACATGATCTCGGTTCAACATAA

Protein sequence

MLSGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMISSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKIDLDKDTQIDVHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLSIKAEASSMFIQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHFKHLNRNLDAKFDSSLSCGPELQVSDDRVNEGILVMENGKKTKALHQDELLLLLGEQEHEVRFAHCRPIYFGSLDEIHVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQVESITLSICSKENCPYRTTNRIENESSAMVFCCCSWLVADEILAWKIISILEKHDLGST*

Homology

[Close]

BLAST of MELO3C021825T2 vs. Swiss-Prot
Match: CPS3B_ARATH (Cleavage and polyadenylation specificity factor subunit 3-II OS=Arabidopsis thaliana GN=CPSF73-II PE=1 SV=2)

HSP 1 Score: 310.8 bits (795), Expect = 2.2e-83
Identity = 150/204 (73.53%), Postives = 168/204 (82.35%), Query Frame = 1


Query: 3   SGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMI 62
           SGLT+QANMYYKMLISWTSQ VKE + T N FDFKNV+ FDRS+I APGPCVLFATPGM+
Sbjct: 268 SGLTIQANMYYKMLISWTSQNVKEKHNTHNPFDFKNVKDFDRSLIHAPGPCVLFATPGML 327

Query: 63  SSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKIDLDKDTQID----VHQL 122
            +GFSLEVFK WAPS LNL+ LPGY VAGTVGHKLM+GKPT +DL   T++D    VHQ+
Sbjct: 328 CAGFSLEVFKHWAPSPLNLVALPGYSVAGTVGHKLMAGKPTTVDLYNGTKVDVRCKVHQV 387

Query: 123 AFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSIS 182
           AFSPHTD+KGIMDL KFLSPK+V+LVHGEKP M +LKE+I SEL IPC  PAN ETVS +
Sbjct: 388 AFSPHTDAKGIMDLTKFLSPKNVVLVHGEKPSMMILKEKITSELDIPCFVPANGETVSFA 447

Query: 183 STLSIKAEASSMFIQSCSTPNFKF 203
           ST  IKA AS MF++SCS PNFKF
Sbjct: 448 STTYIKANASDMFLKSCSNPNFKF 471

HSP 2 Score: 177.6 bits (449), Expect = 2.9e-43
Identity = 129/412 (31.31%), Postives = 187/412 (45.39%), Query Frame = 1


Query: 3   SGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMI 62
           SGLT+QANMYYKMLISWTSQ VKE + T N FDFKNV+ FDRS+I APGPCVLFAT    
Sbjct: 268 SGLTIQANMYYKMLISWTSQNVKEKHNTHNPFDFKNVKDFDRSLIHAPGPCVLFAT---- 327

Query: 63  SSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKIDLDKDTQIDVHQLAFSP 122
                                 PG   AG          P+ ++L          +A   
Sbjct: 328 ----------------------PGMLCAGFSLEVFKHWAPSPLNL----------VALPG 387

Query: 123 HTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLS 182
           ++ +  +   +    P  V L +G K  +     ++H     P  D      + ++  LS
Sbjct: 388 YSVAGTVGHKLMAGKPTTVDLYNGTKVDVRC---KVHQVAFSPHTDAKG--IMDLTKFLS 447

Query: 183 IKAEASSMFIQSCSTPNFKFLKRNLIDKID-----------PDLKDLSYKAVRTSNMLIR 242
            K    ++ +     P+   LK  +  ++D                 +Y     S+M ++
Sbjct: 448 PK----NVVLVHGEKPSMMILKEKITSELDIPCFVPANGETVSFASTTYIKANASDMFLK 507

Query: 243 ECSNPHFKHLNRNLDAKFDSSLSCGPELQVSDDRVNEGILVMENGKKTKALHQDELLLLL 302
            CSNP+FK  N               +L+V+D R  +G+LV+E  KK K +HQDE+  +L
Sbjct: 508 SCSNPNFKFSNST-------------QLRVTDHRTADGVLVIEKSKKAKIVHQDEISEVL 567

Query: 303 GEQEHEVRFAHCRPIYFGSLDEIHVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQ 362
            E+ H V  AHC P+      E   +D        + QLS K+   +S   +      LQ
Sbjct: 568 HEKNHVVSLAHCCPVKVKGESEDDDVD-------LIKQLSAKILKTVSGAQIHESENCLQ 610

Query: 363 VESITLSICSKENCPYRTTNRIENESSAMVFCCCSWLVADEILAWKIISILE 404
           V S   S+C K+ C +R++    + SS  VF CC+W +AD  L W+II+ ++
Sbjct: 628 VASFKGSLCLKDKCMHRSS----SSSSEAVFLCCNWSIADLELGWEIINAIK 610

[Close]

BLAST of MELO3C021825T2 vs. Swiss-Prot
Match: INT11_DICDI (Integrator complex subunit 11 homolog OS=Dictyostelium discoideum GN=ints11 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 8.9e-53
Identity = 117/309 (37.86%), Postives = 176/309 (56.96%), Query Frame = 1


Query: 3   SGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMI 62
           +GL  +AN+YYK+ I+WT+QK+K+T+  RN FDFK+++ F   ++DAPG  VLFATPGM+
Sbjct: 269 AGLAEKANLYYKLFINWTNQKIKQTFVKRNMFDFKHIKPFQSHLVDAPGAMVLFATPGML 328

Query: 63  SSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMS--------GKPTK--IDLDKDTQ 122
            +G SLEVFK+WAP++LN+  +PGYCV GTVG+KL++         KP    +++DK T 
Sbjct: 329 HAGASLEVFKKWAPNELNMTIIPGYCVVGTVGNKLLTTGSDQQQQSKPQSQMVEIDKKTT 388

Query: 123 IDV----HQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHD 182
           I+V    H L+FS H D+KGI+ L+K  +P++VILVHGEK KM  L ++I  E+G+ C+ 
Sbjct: 389 IEVKCKIHNLSFSAHADAKGILQLIKMSNPRNVILVHGEKEKMGFLSQKIIKEMGVNCYY 448

Query: 183 PANNETVSISSTLSIKAEASSMFIQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNM 242
           PAN  T+ I +  SI  + S              LKR ++D          Y     +N 
Sbjct: 449 PANGVTIIIDTMKSIPIDIS-----------LNLLKRQILD----------YSYQYNNNN 508

Query: 243 LIRECSNPHFKHLNRNLDAKFDSSLSCGPELQVSDDRVNEGILVMENGKKTKALHQDELL 298
           L    +  +  +LN N +   ++S      L++ D + N   L + N    K   Q  ++
Sbjct: 509 LNNFNNFNNLNNLNNNNNNNNNNS------LKLIDIKNNTSTLFINNNNNNKKKQQSVVV 550

[Close]

BLAST of MELO3C021825T2 vs. Swiss-Prot
Match: INT11_DANRE (Integrator complex subunit 11 OS=Danio rerio GN=cpsf3l PE=2 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.7e-49
Identity = 88/190 (46.32%), Postives = 135/190 (71.05%), Query Frame = 1


Query: 3   SGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMI 62
           +GLT +AN YYK+ I+WT+QK+++T+  RN F+FK+++ FDRS  D PGP V+FATPGM+
Sbjct: 269 TGLTEKANHYYKLFITWTNQKIRKTFVQRNMFEFKHIKAFDRSYADNPGPMVVFATPGML 328

Query: 63  SSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKIDLD----KDTQIDVHQL 122
            +G SL++FK+WA ++ N++ +PGYCV GTVGHK+++G+  K++++     D ++ V  +
Sbjct: 329 HAGQSLQIFKKWAGNEKNMVIMPGYCVQGTVGHKILNGQ-KKLEMEGRATLDVKLQVEYM 388

Query: 123 AFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSIS 182
           +FS H D+KGIM L++   P++++LVHGE  KM  LK++I  E  I C  PAN ET +I 
Sbjct: 389 SFSAHADAKGIMQLIRMAEPRNMLLVHGEAKKMEFLKDKIEQEFSISCFMPANGETTTIV 448

Query: 183 STLSIKAEAS 189
           +  S+  + S
Sbjct: 449 TNPSVPVDIS 457

[Close]

BLAST of MELO3C021825T2 vs. Swiss-Prot
Match: INT11_BOVIN (Integrator complex subunit 11 OS=Bos taurus GN=CPSF3L PE=2 SV=2)

HSP 1 Score: 195.3 bits (495), Expect = 1.3e-48
Identity = 94/218 (43.12%), Postives = 144/218 (66.06%), Query Frame = 1


Query: 3   SGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMI 62
           +GLT +AN YYK+ I WT+QK+++T+  RN F+FK+++ FDR+  D+PGP V+FATPGM+
Sbjct: 269 TGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAFDRAFADSPGPMVVFATPGML 328

Query: 63  SSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKIDLD----KDTQIDVHQL 122
            +G SL++F++WA ++ N++ +PGYCV GTVGHK++SG+  K++++     + ++ V  +
Sbjct: 329 HAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQ-RKLEMEGRQVLEVKMQVEYM 388

Query: 123 AFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSIS 182
           +FS H D+KGIM LV    P++V+LVHGE  KM  LK++I  E  + C+ PAN ETV++ 
Sbjct: 389 SFSAHADAKGIMQLVGQAEPENVLLVHGEAKKMEFLKQKIEQEFRVNCYMPANGETVTLP 448

Query: 183 STLSIKAEASSMFIQSCSTPNFKFLKRNLIDKIDPDLK 217
           ++ SI    S              LKR +   + PD K
Sbjct: 449 TSPSIPVGIS-----------LGLLKREMAQGLLPDAK 474

[Close]

BLAST of MELO3C021825T2 vs. Swiss-Prot
Match: INT11_CHICK (Integrator complex subunit 11 OS=Gallus gallus GN=CPSF3L PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.7e-48
Identity = 87/190 (45.79%), Postives = 136/190 (71.58%), Query Frame = 1


Query: 3   SGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMI 62
           +GLT +AN YYK+ I+WT+QK+++T+  RN F+FK+++ FDR+  D PGP V+FATPGM+
Sbjct: 269 TGLTEKANHYYKLFITWTNQKIRKTFVQRNMFEFKHIKAFDRAFADNPGPMVVFATPGML 328

Query: 63  SSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKIDLD----KDTQIDVHQL 122
            +G SL++F++WA ++ N++ +PGYCV GTVGHK++SG+  K++++     + ++ V  +
Sbjct: 329 HAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQ-RKLEMEGRQILEVKMQVEYM 388

Query: 123 AFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSIS 182
           +FS H D+KGIM L++   P++V+LVHGE  KM  LK++I  E  + C+ PAN ET +I 
Sbjct: 389 SFSAHADAKGIMQLIRQAEPRNVLLVHGEAKKMEFLKQKIEQEFHVNCYMPANGETTTIF 448

Query: 183 STLSIKAEAS 189
           +  SI  + S
Sbjct: 449 TNPSIPVDIS 457

[Close]

BLAST of MELO3C021825T2 vs. TrEMBL
Match: Q6E435_CUCME (ACT11D09.9 OS=Cucumis melo GN=ACT11D09.9 PE=4 SV=1)

HSP 1 Score: 818.5 bits (2113), Expect = 3.6e-234
Identity = 405/408 (99.26%), Postives = 407/408 (99.75%), Query Frame = 1


Query: 3   SGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMI 62
           +GLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMI
Sbjct: 301 AGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMI 360

Query: 63  SSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKIDLDKDTQIDVHQLAFSP 122
           SSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKIDLDKDTQIDVHQLAFSP
Sbjct: 361 SSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKIDLDKDTQIDVHQLAFSP 420

Query: 123 HTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLS 182
           HTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLS
Sbjct: 421 HTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLS 480

Query: 183 IKAEASSMFIQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHFKHLN 242
           IKAEASSMFIQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHFKHLN
Sbjct: 481 IKAEASSMFIQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHFKHLN 540

Query: 243 RNLDAKFDSSLSCGPELQVSDDRVNEGILVMENGKKTKALHQDELLLLLGEQEHEVRFAH 302
           RNLDAKFDSSLS GPELQVSDDRVNEGILVMENGKKTKALHQDELLLLLGEQEHEVRFAH
Sbjct: 541 RNLDAKFDSSLSGGPELQVSDDRVNEGILVMENGKKTKALHQDELLLLLGEQEHEVRFAH 600

Query: 303 CRPIYFGSLDEIHVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQVESITLSICSK 362
           CRPIYFGSLDEIHVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQVESITLSICSK
Sbjct: 601 CRPIYFGSLDEIHVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQVESITLSICSK 660

Query: 363 ENCPYRTTNRIENESSAMVFCCCSWLVADEILAWKIISILEKHDLGST 411
           ENCPYRTTNRIENES+AMVFCCCSWLVADEILAWKIISILEKHDLGST
Sbjct: 661 ENCPYRTTNRIENESTAMVFCCCSWLVADEILAWKIISILEKHDLGST 708

[Close]

BLAST of MELO3C021825T2 vs. TrEMBL
Match: A0A0A0LQW3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G435430 PE=4 SV=1)

HSP 1 Score: 788.5 bits (2035), Expect = 3.9e-225
Identity = 394/412 (95.63%), Postives = 400/412 (97.09%), Query Frame = 1


Query: 3   SGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMI 62
           +GLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMI
Sbjct: 268 AGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMI 327

Query: 63  SSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKIDLDKDTQIDV----HQL 122
           SSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKIDLDK TQIDV    HQL
Sbjct: 328 SSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKIDLDKVTQIDVQCQVHQL 387

Query: 123 AFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSIS 182
           AFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSIS
Sbjct: 388 AFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSIS 447

Query: 183 STLSIKAEASSMFIQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHF 242
           STLS+KAEASSMFIQSCSTPNFKFLKRNL   IDPDLKDLSYKA RTSNMLIRECSNPHF
Sbjct: 448 STLSVKAEASSMFIQSCSTPNFKFLKRNL---IDPDLKDLSYKAERTSNMLIRECSNPHF 507

Query: 243 KHLNRNLDAKFDSSLSCGPELQVSDDRVNEGILVMENGKKTKALHQDELLLLLGEQEHEV 302
           KHL RNLDAKFDSSLSCGP LQVSDDRVNEGILVMENGKKTKALHQDELLLLLG+QEHEV
Sbjct: 508 KHLKRNLDAKFDSSLSCGPALQVSDDRVNEGILVMENGKKTKALHQDELLLLLGQQEHEV 567

Query: 303 RFAHCRPIYFGSLDEIHVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQVESITLS 362
           RFAHCRPIYFGSLDEIHVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQVESITLS
Sbjct: 568 RFAHCRPIYFGSLDEIHVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQVESITLS 627

Query: 363 ICSKENCPYRTTNRIENESSAMVFCCCSWLVADEILAWKIISILEKHDLGST 411
           ICSKENCPYRT +RI+NES+AMVFCCCSWLVADEILAWKIISILEKHDLGST
Sbjct: 628 ICSKENCPYRTIDRIKNESTAMVFCCCSWLVADEILAWKIISILEKHDLGST 676

[Close]

BLAST of MELO3C021825T2 vs. TrEMBL
Match: A0A0D2W0M5_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_012G1826002 PE=4 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 6.9e-129
Identity = 246/413 (59.56%), Postives = 302/413 (73.12%), Query Frame = 1


Query: 3   SGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMI 62
           +GLT+QANMYYKMLI+WTSQK+KETY T NAFDFKNV+ FDRS+I+APGPCVLFATPGMI
Sbjct: 45  AGLTIQANMYYKMLINWTSQKIKETYATHNAFDFKNVRNFDRSLINAPGPCVLFATPGMI 104

Query: 63  SSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKIDLDKDTQIDV----HQL 122
             GFSLEVF +WAPS+ NL+TLPGYCVAGT+GHKLMSGKPTKIDLDKDTQI+V    HQL
Sbjct: 105 VGGFSLEVFMQWAPSENNLVTLPGYCVAGTIGHKLMSGKPTKIDLDKDTQINVRCQIHQL 164

Query: 123 AFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSIS 182
           +FSPHTD+KGIMDLVKFLSPKH ILVHGEKPKMA LKERI SELGI C+ PANNETV+I 
Sbjct: 165 SFSPHTDAKGIMDLVKFLSPKHAILVHGEKPKMATLKERIQSELGIQCYCPANNETVTIP 224

Query: 183 STLSIKAEASSMFIQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHF 242
           ST  +KA+AS  FI+SC  PNFKF                              CS+   
Sbjct: 225 STHYVKADASGTFIRSCLNPNFKF----------------------------STCSSTDK 284

Query: 243 KHLNRNLDAKFDSSLSCGPELQVSDDRVNEGILVMENGKKTKALHQDELLLLLGEQEHEV 302
            +L+ N  +K  S LS      VSDDR  EGILV+E GKK K +HQDE L +LGE++HE+
Sbjct: 285 SYLDSN-KSKAVSRLS------VSDDRATEGILVVEKGKKAKVIHQDEFLHMLGEKKHEI 344

Query: 303 RFAHCRPIYFGSLDEI----HVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQVES 362
           +FA+C P++    +++    H++ S  + +L +S+LS  LS ELS+ N+ +LGE LQVES
Sbjct: 345 QFAYCFPMHMARTEDLSSTSHMLCSFDKCTL-ISRLSMILSDELSEGNILDLGEELQVES 404

Query: 363 ITLSICSKENCPYRTTNRIENESSAMVFCCCSWLVADEILAWKIISILEKHDL 408
             +S+CS +NCP+R ++ ++N S + VF CC W VADE LAWKIISI++   L
Sbjct: 405 FHVSVCSSDNCPHRLSSSLQNGSES-VFFCCHWSVADEKLAWKIISIMKNSTL 420

[Close]

BLAST of MELO3C021825T2 vs. TrEMBL
Match: A0A061E8Z1_THECC (Cleavage and polyadenylation specificity factor 73 kDa subunit-II OS=Theobroma cacao GN=TCM_011055 PE=4 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 3.7e-122
Identity = 242/420 (57.62%), Postives = 288/420 (68.57%), Query Frame = 1


Query: 3   SGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMI 62
           SGLT+QANMYYKMLI+WTSQK+KETY T NAFDFKNVQ FDRS+I+APGPCVLFATPGMI
Sbjct: 267 SGLTIQANMYYKMLINWTSQKIKETYATHNAFDFKNVQNFDRSLINAPGPCVLFATPGMI 326

Query: 63  SSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKIDLDKDTQIDV----HQL 122
           S GFSLEVF +WAPS++NLITLPGYCVAGT+GHKLMSGKPTKIDLDKDTQ+DV    HQL
Sbjct: 327 SGGFSLEVFMQWAPSEINLITLPGYCVAGTIGHKLMSGKPTKIDLDKDTQVDVRCQIHQL 386

Query: 123 AFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSIS 182
           +FSPHTD+KGIMDLVKFLSPKH ILVHGEKPKMA LKERI SELGI              
Sbjct: 387 SFSPHTDAKGIMDLVKFLSPKHAILVHGEKPKMATLKERIQSELGI-------------- 446

Query: 183 STLSIKAEASSMFIQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHF 242
                           C  P          +     +    Y     S+  I+ C NP+F
Sbjct: 447 ---------------QCYCP---------ANNDTVTIPTTHYVKADASDAFIKSCLNPNF 506

Query: 243 KHL-NRNLDAKFDSSLSCG--PELQVSDDRVNEGILVMENGKKTKALHQDELLLLLGEQE 302
           K   + ++D  +  S      P LQVSD+RV EGILV+E GKK K +HQDELL +LGE +
Sbjct: 507 KFSKSSSVDKSYSGSNDSKAIPGLQVSDERVAEGILVVEKGKKAKVIHQDELLHMLGENK 566

Query: 303 HEVRFAHCRPIYFGSLDEIHVMDSLSRKSLW--------LSQLSFKLSTELSDRNVQNLG 362
           HEV+FA+C P+    L++    D  S   L         +S LS KLS ELSD N+Q+LG
Sbjct: 567 HEVQFAYCFPMRTERLEKTRSEDLPSADDLLCGLDKCTLISLLSTKLSNELSDGNIQDLG 626

Query: 363 EYLQVESITLSICSKENCPYRTTNRIENESSAMVFCCCSWLVADEILAWKIISILEKHDL 408
           E LQVES  LSIC K+NCP+R ++ ++N+S  +VF CCSW VADE+LAWKIISI++ + L
Sbjct: 627 EQLQVESFCLSICLKDNCPHRISDSLQNDSE-VVFFCCSWSVADEMLAWKIISIMKNYTL 647

[Close]

BLAST of MELO3C021825T2 vs. TrEMBL
Match: M5XX69_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002557mg PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 7.4e-115
Identity = 231/419 (55.13%), Postives = 278/419 (66.35%), Query Frame = 1


Query: 3   SGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMI 62
           +GLT+QANMYYKMLISWTSQKVKETY+TRNAFDFKN  KFDRSMI+APGPCVLFATPGMI
Sbjct: 271 AGLTLQANMYYKMLISWTSQKVKETYSTRNAFDFKNAHKFDRSMINAPGPCVLFATPGMI 330

Query: 63  SSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKIDLDKDTQIDV----HQL 122
           S GFSLEVFK WAPS++NL+TLPGYCVAGT+GHKLMSGKPTKIDLDKDTQIDV    H L
Sbjct: 331 SGGFSLEVFKHWAPSEMNLVTLPGYCVAGTIGHKLMSGKPTKIDLDKDTQIDVRCQIHHL 390

Query: 123 AFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSIS 182
           +FSPHTD+KGIMDL+KFLSPK+VILVHGEKPKMA LK +I                    
Sbjct: 391 SFSPHTDAKGIMDLIKFLSPKNVILVHGEKPKMATLKGKI-------------------Q 450

Query: 183 STLSIKAEASSMFIQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHF 242
           S L I+          C  P          +     +    Y     S+  IR CSNP+F
Sbjct: 451 SELGIQ----------CHDP---------ANNETVSISSTHYVKALASDAFIRSCSNPNF 510

Query: 243 KHLNRNLDAKFDSSL---SCGPELQVSDDRVNEGILVMENGKKTKALHQDELLLLLGEQE 302
           K    + + +  S+    +  P L+VSD+RV EG+LVME  KK K +HQDELLL+LGE++
Sbjct: 511 KFSKSSQEDEHGSNSRNNNFTPRLRVSDERVAEGVLVMERNKKAKVVHQDELLLMLGEKK 570

Query: 303 HEVRFAHCRPIYFGSLDEIHVMDSLSRK-------SLWLSQLSFKLSTELSDRNVQNLGE 362
           H+V+FA+C P   G L E     +   +       S  L QLS KLS E S  N+Q+  +
Sbjct: 571 HQVQFAYCCPADIGHLGETKSSTTNDGQLCKSETCSRLLRQLSAKLSNEFSQGNIQDFED 630

Query: 363 YLQVESITLSICSKENCPYRTTNRIENESSAMVFCCCSWLVADEILAWKIISILEKHDL 408
           +LQVES  +SIC K NCPYR  + ++N+S    F CCSW  ADE LAWKIISI +  ++
Sbjct: 631 HLQVESFHVSICLKNNCPYRLMD-VQNKSQEAAFFCCSWGTADEKLAWKIISICQNFNV 650

[Close]

BLAST of MELO3C021825T2 vs. TAIR10
Match: AT2G01730.1 (AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II)

HSP 1 Score: 310.8 bits (795), Expect = 1.2e-84
Identity = 150/204 (73.53%), Postives = 168/204 (82.35%), Query Frame = 1


Query: 3   SGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMI 62
           SGLT+QANMYYKMLISWTSQ VKE + T N FDFKNV+ FDRS+I APGPCVLFATPGM+
Sbjct: 268 SGLTIQANMYYKMLISWTSQNVKEKHNTHNPFDFKNVKDFDRSLIHAPGPCVLFATPGML 327

Query: 63  SSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKIDLDKDTQID----VHQL 122
            +GFSLEVFK WAPS LNL+ LPGY VAGTVGHKLM+GKPT +DL   T++D    VHQ+
Sbjct: 328 CAGFSLEVFKHWAPSPLNLVALPGYSVAGTVGHKLMAGKPTTVDLYNGTKVDVRCKVHQV 387

Query: 123 AFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSIS 182
           AFSPHTD+KGIMDL KFLSPK+V+LVHGEKP M +LKE+I SEL IPC  PAN ETVS +
Sbjct: 388 AFSPHTDAKGIMDLTKFLSPKNVVLVHGEKPSMMILKEKITSELDIPCFVPANGETVSFA 447

Query: 183 STLSIKAEASSMFIQSCSTPNFKF 203
           ST  IKA AS MF++SCS PNFKF
Sbjct: 448 STTYIKANASDMFLKSCSNPNFKF 471

HSP 2 Score: 177.6 bits (449), Expect = 1.6e-44
Identity = 129/412 (31.31%), Postives = 187/412 (45.39%), Query Frame = 1


Query: 3   SGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMI 62
           SGLT+QANMYYKMLISWTSQ VKE + T N FDFKNV+ FDRS+I APGPCVLFAT    
Sbjct: 268 SGLTIQANMYYKMLISWTSQNVKEKHNTHNPFDFKNVKDFDRSLIHAPGPCVLFAT---- 327

Query: 63  SSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKIDLDKDTQIDVHQLAFSP 122
                                 PG   AG          P+ ++L          +A   
Sbjct: 328 ----------------------PGMLCAGFSLEVFKHWAPSPLNL----------VALPG 387

Query: 123 HTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLS 182
           ++ +  +   +    P  V L +G K  +     ++H     P  D      + ++  LS
Sbjct: 388 YSVAGTVGHKLMAGKPTTVDLYNGTKVDVRC---KVHQVAFSPHTDAKG--IMDLTKFLS 447

Query: 183 IKAEASSMFIQSCSTPNFKFLKRNLIDKID-----------PDLKDLSYKAVRTSNMLIR 242
            K    ++ +     P+   LK  +  ++D                 +Y     S+M ++
Sbjct: 448 PK----NVVLVHGEKPSMMILKEKITSELDIPCFVPANGETVSFASTTYIKANASDMFLK 507

Query: 243 ECSNPHFKHLNRNLDAKFDSSLSCGPELQVSDDRVNEGILVMENGKKTKALHQDELLLLL 302
            CSNP+FK  N               +L+V+D R  +G+LV+E  KK K +HQDE+  +L
Sbjct: 508 SCSNPNFKFSNST-------------QLRVTDHRTADGVLVIEKSKKAKIVHQDEISEVL 567

Query: 303 GEQEHEVRFAHCRPIYFGSLDEIHVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQ 362
            E+ H V  AHC P+      E   +D        + QLS K+   +S   +      LQ
Sbjct: 568 HEKNHVVSLAHCCPVKVKGESEDDDVD-------LIKQLSAKILKTVSGAQIHESENCLQ 610

Query: 363 VESITLSICSKENCPYRTTNRIENESSAMVFCCCSWLVADEILAWKIISILE 404
           V S   S+C K+ C +R++    + SS  VF CC+W +AD  L W+II+ ++
Sbjct: 628 VASFKGSLCLKDKCMHRSS----SSSSEAVFLCCNWSIADLELGWEIINAIK 610

[Close]

BLAST of MELO3C021825T2 vs. TAIR10
Match: AT1G61010.1 (AT1G61010.1 cleavage and polyadenylation specificity factor 73-I)

HSP 1 Score: 84.3 bits (207), Expect = 1.9e-16
Identity = 50/164 (30.49%), Postives = 80/164 (48.78%), Query Frame = 1


Query: 3   SGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDR-SMIDAPGPCVLFATPGM 62
           S L  +    Y+  I   + +++  +   N F FK++   +     +  GP V+ ATPG 
Sbjct: 282 SPLAKKCMAVYQTYILSMNDRIRNQFANSNPFVFKHISPLNSIDDFNDVGPSVVMATPGG 341

Query: 63  ISSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKI----DLDKDTQIDVHQ 122
           + SG S ++F  W   K N   +PGY V GT+  K +  +P ++     L     + VH 
Sbjct: 342 LQSGLSRQLFDSWCSDKKNACIIPGYMVEGTLA-KTIINEPKEVTLMNGLTAPLNMQVHY 401

Query: 123 LAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSE 162
           ++FS H D       +K L P ++ILVHGE  +M  LK+++ +E
Sbjct: 402 ISFSAHADYAQTSTFLKELMPPNIILVHGEANEMMRLKQKLLTE 444

[Close]

BLAST of MELO3C021825T2 vs. NCBI nr
Match: gi|659118488|ref|XP_008459147.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Cucumis melo])

HSP 1 Score: 818.5 bits (2113), Expect = 5.1e-234
Identity = 407/412 (98.79%), Postives = 408/412 (99.03%), Query Frame = 1


Query: 3   SGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMI 62
           +GLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMI
Sbjct: 268 AGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMI 327

Query: 63  SSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKIDLDKDTQIDV----HQL 122
           SSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKIDLDKDTQIDV    HQL
Sbjct: 328 SSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKIDLDKDTQIDVQCQVHQL 387

Query: 123 AFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSIS 182
           AFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSIS
Sbjct: 388 AFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSIS 447

Query: 183 STLSIKAEASSMFIQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHF 242
           STLSIKAEASSMFIQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHF
Sbjct: 448 STLSIKAEASSMFIQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHF 507

Query: 243 KHLNRNLDAKFDSSLSCGPELQVSDDRVNEGILVMENGKKTKALHQDELLLLLGEQEHEV 302
           KHLNRNLDAKFDSSLSCGPELQVSDDRVNEGILVMENGKKTKALHQDELLLLLGEQEHEV
Sbjct: 508 KHLNRNLDAKFDSSLSCGPELQVSDDRVNEGILVMENGKKTKALHQDELLLLLGEQEHEV 567

Query: 303 RFAHCRPIYFGSLDEIHVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQVESITLS 362
           RFAHCRPIYFGSLDEIHVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQVESITLS
Sbjct: 568 RFAHCRPIYFGSLDEIHVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQVESITLS 627

Query: 363 ICSKENCPYRTTNRIENESSAMVFCCCSWLVADEILAWKIISILEKHDLGST 411
           ICSKENCPYRTTNRIENESSAMVFCCCSWLVADEILAWKIISILEKHDLGST
Sbjct: 628 ICSKENCPYRTTNRIENESSAMVFCCCSWLVADEILAWKIISILEKHDLGST 679

[Close]

BLAST of MELO3C021825T2 vs. NCBI nr
Match: gi|46360445|gb|AAS80153.1| (ACT11D09.9 [Cucumis melo])

HSP 1 Score: 818.5 bits (2113), Expect = 5.1e-234
Identity = 405/408 (99.26%), Postives = 407/408 (99.75%), Query Frame = 1


Query: 3   SGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMI 62
           +GLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMI
Sbjct: 301 AGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMI 360

Query: 63  SSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKIDLDKDTQIDVHQLAFSP 122
           SSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKIDLDKDTQIDVHQLAFSP
Sbjct: 361 SSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKIDLDKDTQIDVHQLAFSP 420

Query: 123 HTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLS 182
           HTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLS
Sbjct: 421 HTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSISSTLS 480

Query: 183 IKAEASSMFIQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHFKHLN 242
           IKAEASSMFIQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHFKHLN
Sbjct: 481 IKAEASSMFIQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHFKHLN 540

Query: 243 RNLDAKFDSSLSCGPELQVSDDRVNEGILVMENGKKTKALHQDELLLLLGEQEHEVRFAH 302
           RNLDAKFDSSLS GPELQVSDDRVNEGILVMENGKKTKALHQDELLLLLGEQEHEVRFAH
Sbjct: 541 RNLDAKFDSSLSGGPELQVSDDRVNEGILVMENGKKTKALHQDELLLLLGEQEHEVRFAH 600

Query: 303 CRPIYFGSLDEIHVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQVESITLSICSK 362
           CRPIYFGSLDEIHVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQVESITLSICSK
Sbjct: 601 CRPIYFGSLDEIHVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQVESITLSICSK 660

Query: 363 ENCPYRTTNRIENESSAMVFCCCSWLVADEILAWKIISILEKHDLGST 411
           ENCPYRTTNRIENES+AMVFCCCSWLVADEILAWKIISILEKHDLGST
Sbjct: 661 ENCPYRTTNRIENESTAMVFCCCSWLVADEILAWKIISILEKHDLGST 708

[Close]

BLAST of MELO3C021825T2 vs. NCBI nr
Match: gi|778673818|ref|XP_011650067.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Cucumis sativus])

HSP 1 Score: 788.5 bits (2035), Expect = 5.7e-225
Identity = 394/412 (95.63%), Postives = 400/412 (97.09%), Query Frame = 1


Query: 3   SGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMI 62
           +GLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMI
Sbjct: 268 AGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMI 327

Query: 63  SSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKIDLDKDTQIDV----HQL 122
           SSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKIDLDK TQIDV    HQL
Sbjct: 328 SSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKIDLDKVTQIDVQCQVHQL 387

Query: 123 AFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSIS 182
           AFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSIS
Sbjct: 388 AFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSIS 447

Query: 183 STLSIKAEASSMFIQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHF 242
           STLS+KAEASSMFIQSCSTPNFKFLKRNL   IDPDLKDLSYKA RTSNMLIRECSNPHF
Sbjct: 448 STLSVKAEASSMFIQSCSTPNFKFLKRNL---IDPDLKDLSYKAERTSNMLIRECSNPHF 507

Query: 243 KHLNRNLDAKFDSSLSCGPELQVSDDRVNEGILVMENGKKTKALHQDELLLLLGEQEHEV 302
           KHL RNLDAKFDSSLSCGP LQVSDDRVNEGILVMENGKKTKALHQDELLLLLG+QEHEV
Sbjct: 508 KHLKRNLDAKFDSSLSCGPALQVSDDRVNEGILVMENGKKTKALHQDELLLLLGQQEHEV 567

Query: 303 RFAHCRPIYFGSLDEIHVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQVESITLS 362
           RFAHCRPIYFGSLDEIHVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQVESITLS
Sbjct: 568 RFAHCRPIYFGSLDEIHVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQVESITLS 627

Query: 363 ICSKENCPYRTTNRIENESSAMVFCCCSWLVADEILAWKIISILEKHDLGST 411
           ICSKENCPYRT +RI+NES+AMVFCCCSWLVADEILAWKIISILEKHDLGST
Sbjct: 628 ICSKENCPYRTIDRIKNESTAMVFCCCSWLVADEILAWKIISILEKHDLGST 676

[Close]

BLAST of MELO3C021825T2 vs. NCBI nr
Match: gi|1000952285|ref|XP_015578956.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II [Ricinus communis])

HSP 1 Score: 469.2 bits (1206), Expect = 7.6e-129
Identity = 245/413 (59.32%), Postives = 298/413 (72.15%), Query Frame = 1


Query: 3   SGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMI 62
           +GLT+QANMYYKMLI WTSQK+KETYT+RNAFDFKNV  FDRS++DAPGPCVLFATPGMI
Sbjct: 268 AGLTIQANMYYKMLIGWTSQKIKETYTSRNAFDFKNVYTFDRSLLDAPGPCVLFATPGMI 327

Query: 63  SSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKIDLDKDTQIDV----HQL 122
           S GFSLEVFKRWAP ++NL+TLPGYCVAGT+GHKLMSGKP+KI+LDKDTQIDV    HQL
Sbjct: 328 SGGFSLEVFKRWAPCEMNLVTLPGYCVAGTIGHKLMSGKPSKINLDKDTQIDVRCQIHQL 387

Query: 123 AFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSIS 182
           +FSPHTD+KGIMDLVKFLSPKHVILVHGEKPKMA LKERI SEL I C+ PAN ET+ I 
Sbjct: 388 SFSPHTDAKGIMDLVKFLSPKHVILVHGEKPKMASLKERIQSELEIQCYVPANCETLCIP 447

Query: 183 STLSIKAEASSMFIQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHF 242
           STL +KA+AS  FI+SC +PNF+FL ++        LKD S   + ++N   R       
Sbjct: 448 STLFVKADASEAFIRSCLSPNFRFLNKS--------LKDTSDLVLHSTNATSRL------ 507

Query: 243 KHLNRNLDAKFDSSLSCGPELQVSDDRVNEGILVMENGKKTKALHQDELLLLLGEQEHEV 302
                                +VSD+RV EGILV+E  KK + +HQDELLL+LG ++HEV
Sbjct: 508 ---------------------EVSDERVAEGILVVEKNKKARVVHQDELLLMLGAKQHEV 567

Query: 303 RFAHCRPIYFGSLDE-------IHVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQ 362
           +FA+C P+   ++D+        H    LS K  WL +L  KL+ E   RN+QN GE+LQ
Sbjct: 568 QFAYCCPVQVDNMDQTRRDPSSTHDELRLSEKCCWLQKLFTKLTNEFPGRNIQNFGEHLQ 627

Query: 363 VESITLSICSKENCPYRTTNRIEN-ESSAMVFCCCSWLVADEILAWKIISILE 404
            ES  +S C K++CPYR   +I N + +A VF CC+W VADE LAW+IIS +E
Sbjct: 628 AESFHVSTCLKDDCPYR---KIGNPQKTAAVFFCCTWSVADEKLAWEIISTME 642

[Close]

BLAST of MELO3C021825T2 vs. NCBI nr
Match: gi|823255818|ref|XP_012460570.1| (PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II [Gossypium raimondii])

HSP 1 Score: 468.8 bits (1205), Expect = 9.9e-129
Identity = 246/413 (59.56%), Postives = 302/413 (73.12%), Query Frame = 1


Query: 3   SGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAPGPCVLFATPGMI 62
           +GLT+QANMYYKMLI+WTSQK+KETY T NAFDFKNV+ FDRS+I+APGPCVLFATPGMI
Sbjct: 267 AGLTIQANMYYKMLINWTSQKIKETYATHNAFDFKNVRNFDRSLINAPGPCVLFATPGMI 326

Query: 63  SSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKIDLDKDTQIDV----HQL 122
             GFSLEVF +WAPS+ NL+TLPGYCVAGT+GHKLMSGKPTKIDLDKDTQI+V    HQL
Sbjct: 327 VGGFSLEVFMQWAPSENNLVTLPGYCVAGTIGHKLMSGKPTKIDLDKDTQINVRCQIHQL 386

Query: 123 AFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELGIPCHDPANNETVSIS 182
           +FSPHTD+KGIMDLVKFLSPKH ILVHGEKPKMA LKERI SELGI C+ PANNETV+I 
Sbjct: 387 SFSPHTDAKGIMDLVKFLSPKHAILVHGEKPKMATLKERIQSELGIQCYCPANNETVTIP 446

Query: 183 STLSIKAEASSMFIQSCSTPNFKFLKRNLIDKIDPDLKDLSYKAVRTSNMLIRECSNPHF 242
           ST  +KA+AS  FI+SC  PNFKF                              CS+   
Sbjct: 447 STHYVKADASGTFIRSCLNPNFKF----------------------------STCSSTDK 506

Query: 243 KHLNRNLDAKFDSSLSCGPELQVSDDRVNEGILVMENGKKTKALHQDELLLLLGEQEHEV 302
            +L+ N  +K  S LS      VSDDR  EGILV+E GKK K +HQDE L +LGE++HE+
Sbjct: 507 SYLDSN-KSKAVSRLS------VSDDRATEGILVVEKGKKAKVIHQDEFLHMLGEKKHEI 566

Query: 303 RFAHCRPIYFGSLDEI----HVMDSLSRKSLWLSQLSFKLSTELSDRNVQNLGEYLQVES 362
           +FA+C P++    +++    H++ S  + +L +S+LS  LS ELS+ N+ +LGE LQVES
Sbjct: 567 QFAYCFPMHMARTEDLSSTSHMLCSFDKCTL-ISRLSMILSDELSEGNILDLGEELQVES 626

Query: 363 ITLSICSKENCPYRTTNRIENESSAMVFCCCSWLVADEILAWKIISILEKHDL 408
             +S+CS +NCP+R ++ ++N S + VF CC W VADE LAWKIISI++   L
Sbjct: 627 FHVSVCSSDNCPHRLSSSLQNGSES-VFFCCHWSVADEKLAWKIISIMKNSTL 642

The following BLAST results are available for this feature:

BLAST of MELO3C021825T2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CPS3B_ARATH	2.2e-83	73.53	Cleavage and polyadenylation specificity factor subunit 3-II OS=Arabidopsis thal...	[more]
INT11_DICDI	8.9e-53	37.86	Integrator complex subunit 11 homolog OS=Dictyostelium discoideum GN=ints11 PE=3...	[more]
INT11_DANRE	2.7e-49	46.32	Integrator complex subunit 11 OS=Danio rerio GN=cpsf3l PE=2 SV=1	[more]
INT11_BOVIN	1.3e-48	43.12	Integrator complex subunit 11 OS=Bos taurus GN=CPSF3L PE=2 SV=2	[more]
INT11_CHICK	1.7e-48	45.79	Integrator complex subunit 11 OS=Gallus gallus GN=CPSF3L PE=2 SV=1	[more]

BLAST of MELO3C021825T2 vs. TrEMBL


Match Name	E-value	Identity	Description
Q6E435_CUCME	3.6e-234	99.26	ACT11D09.9 OS=Cucumis melo GN=ACT11D09.9 PE=4 SV=1	[more]
A0A0A0LQW3_CUCSA	3.9e-225	95.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G435430 PE=4 SV=1	[more]
A0A0D2W0M5_GOSRA	6.9e-129	59.56	Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_012G1826002 PE...	[more]
A0A061E8Z1_THECC	3.7e-122	57.62	Cleavage and polyadenylation specificity factor 73 kDa subunit-II OS=Theobroma c...	[more]
M5XX69_PRUPE	7.4e-115	55.13	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002557mg PE=4 SV=1	[more]

BLAST of MELO3C021825T2 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01730.1	1.2e-84	73.53	cleavage and polyadenylation specificity factor 73 kDa subunit-II	[more]
AT1G61010.1	1.9e-16	30.49	cleavage and polyadenylation specificity factor 73-I	[more]

BLAST of MELO3C021825T2 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118488\|ref\|XP_008459147.1\|	5.1e-234	98.79	PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II isoform ...	[more]
gi\|46360445\|gb\|AAS80153.1\|	5.1e-234	99.26	ACT11D09.9 [Cucumis melo]	[more]
gi\|778673818\|ref\|XP_011650067.1\|	5.7e-225	95.63	PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II isoform ...	[more]
gi\|1000952285\|ref\|XP_015578956.1\|	7.6e-129	59.32	PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II [Ricinus...	[more]
gi\|823255818\|ref\|XP_012460570.1\|	9.9e-129	59.56	PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II [Gossypi...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001279	Metallo-B-lactamas
IPR011108	RMMBL
IPR022712	Beta_Casp

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C021825	MELO3C021825	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C021825T2	MELO3C021825T2-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C021825T2.cds1	MELO3C021825T2.cds1	CDS
MELO3C021825T2.cds2	MELO3C021825T2.cds2	CDS
MELO3C021825T2.cds3	MELO3C021825T2.cds3	CDS
MELO3C021825T2.cds4	MELO3C021825T2.cds4	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001279	Metallo-beta-lactamase	unknown	SSF56281	Metallo-hydrolase/oxidoreductase	coord: 2..178 score: 9.73
IPR011108	Zn-dependent metallo-hydrolase, RNA specificity domain	PFAM	PF07521	RMMBL	coord: 113..167 score: 5.2
IPR022712	Beta-Casp domain	PFAM	PF10996	Beta-Casp	coord: 2..97 score: 3.4
IPR022712	Beta-Casp domain	SMART	SM01027	Beta_Casp_2	coord: 1..97 score: 3.9
None	No IPR available	PANTHER	PTHR11203	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR	coord: 1..211 score: 5.9
None	No IPR available	PANTHER	PTHR11203:SF37	INTEGRATOR COMPLEX SUBUNIT 11	coord: 1..211 score: 5.9