MELO3C021812T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C021812T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionNSFL1 cofactor p47
Locationchr12 : 17936576 .. 17937061 (-)
Sequence length486
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGCAAAAAGTTTATTCTTTTACAAATTTTCTTACTTCTGATCCTTCACCCTTCCCTTCTCTTCTCCTTATCCTCCTCATCTTCACCTTCCATATCCCCAAATGTCGTTTCTTCTCCTACCACCATTTTCCATGGCTGCCTCTTTTCTATTACAATTGTGTTGGCAATCATAAGATACTCTGCAATCCCATTCCAACATCCAGTCCTAGAAGATTGCCTTCTGGTGGTTGGGCTTTAAGAGCAGCACCAATCGCCTTACTTGTGGTCGTGAGTTGGTTGAGTCAGAAGGAATCAGCAGGAGTTGCTGCCAGGAAGTGGGGGTCTCAGGGCTGCCATGTTTCGACCATTTCAGAACACAAGGCAGAGGATGAAGAAATTGGTGGTTGTACTCCTTGGGTTCTTGTTGGAATTATAGTACTACTATTCAACATGGCTCAACGGCAGGCACTCATTCGGCACTGCTTGTTTGTAAGAAGTATGTGA

mRNA sequence

ATGATGCAAAAAGTTTATTCTTTTACAAATTTTCTTACTTCTGATCCTTCACCCTTCCCTTCTCTTCTCCTTATCCTCCTCATCTTCACCTTCCATATCCCCAAATGTCGTTTCTTCTCCTACCACCATTTTCCATGGCTGCCTCTTTTCTATTACAATTGTGTTGGCAATCATAAGATACTCTGCAATCCCATTCCAACATCCAGTCCTAGAAGATTGCCTTCTGGTGGTTGGGCTTTAAGAGCAGCACCAATCGCCTTACTTGTGGTCGTGAGTTGGTTGAGTCAGAAGGAATCAGCAGGAGTTGCTGCCAGGAAGTGGGGGTCTCAGGGCTGCCATGTTTCGACCATTTCAGAACACAAGGCAGAGGATGAAGAAATTGGTGGTTGTACTCCTTGGGTTCTTGTTGGAATTATAGTACTACTATTCAACATGGCTCAACGGCAGGCACTCATTCGGCACTGCTTGTTTGTAAGAAGTATGTGA

Coding sequence (CDS)

ATGATGCAAAAAGTTTATTCTTTTACAAATTTTCTTACTTCTGATCCTTCACCCTTCCCTTCTCTTCTCCTTATCCTCCTCATCTTCACCTTCCATATCCCCAAATGTCGTTTCTTCTCCTACCACCATTTTCCATGGCTGCCTCTTTTCTATTACAATTGTGTTGGCAATCATAAGATACTCTGCAATCCCATTCCAACATCCAGTCCTAGAAGATTGCCTTCTGGTGGTTGGGCTTTAAGAGCAGCACCAATCGCCTTACTTGTGGTCGTGAGTTGGTTGAGTCAGAAGGAATCAGCAGGAGTTGCTGCCAGGAAGTGGGGGTCTCAGGGCTGCCATGTTTCGACCATTTCAGAACACAAGGCAGAGGATGAAGAAATTGGTGGTTGTACTCCTTGGGTTCTTGTTGGAATTATAGTACTACTATTCAACATGGCTCAACGGCAGGCACTCATTCGGCACTGCTTGTTTGTAAGAAGTATGTGA

Protein sequence

MMQKVYSFTNFLTSDPSPFPSLLLILLIFTFHIPKCRFFSYHHFPWLPLFYYNCVGNHKILCNPIPTSSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWGSQGCHVSTISEHKAEDEEIGGCTPWVLVGIIVLLFNMAQRQALIRHCLFVRSM*
Homology
[Close]
BLAST of MELO3C021812T1 vs. TrEMBL
Match: A0A0A0LW23_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G554550 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 1.1e-80
Identity = 149/160 (93.12%), Postives = 152/160 (95.00%), Query Frame = 1 

Query: 2   MQKVYSFTNFLTSDPSPFPSLLLILLIFTFHIPKCRFFSYHHFPWLPLFYYNCVGNHKIL 61
           MQKV SFT+FLTSDPSPFPSLLL+LLIFTFHI KCRFFSYHHFP LPLFYYNCVGNHKIL
Sbjct: 1   MQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGNHKIL 60

Query: 62  CNPIPTSSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWGSQGCHVSTISEHK 121
           CNPIP SSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKW SQG  VSTISEHK
Sbjct: 61  CNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTISEHK 120

Query: 122 AEDEEIGGCTPWVLVGIIVLLFNMAQRQALIRHCLFVRSM 162
           AE EEIGGCTPWVLVG+IVLLFNMAQRQALIRHCLFVRSM
Sbjct: 121 AEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 160

[Close]
BLAST of MELO3C021812T1 vs. NCBI nr
Match: gi|700210872|gb|KGN65968.1| (hypothetical protein Csa_1G554550 [Cucumis sativus])

HSP 1 Score: 307.4 bits (786), Expect = 1.5e-80
Identity = 149/160 (93.12%), Postives = 152/160 (95.00%), Query Frame = 1 

Query: 2   MQKVYSFTNFLTSDPSPFPSLLLILLIFTFHIPKCRFFSYHHFPWLPLFYYNCVGNHKIL 61
           MQKV SFT+FLTSDPSPFPSLLL+LLIFTFHI KCRFFSYHHFP LPLFYYNCVGNHKIL
Sbjct: 1   MQKVSSFTHFLTSDPSPFPSLLLLLLIFTFHISKCRFFSYHHFPLLPLFYYNCVGNHKIL 60

Query: 62  CNPIPTSSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWGSQGCHVSTISEHK 121
           CNPIP SSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKW SQG  VSTISEHK
Sbjct: 61  CNPIPISSPRRLPSGGWALRAAPIALLVVVSWLSQKESAGVAARKWRSQGFRVSTISEHK 120

Query: 122 AEDEEIGGCTPWVLVGIIVLLFNMAQRQALIRHCLFVRSM 162
           AE EEIGGCTPWVLVG+IVLLFNMAQRQALIRHCLFVRSM
Sbjct: 121 AEYEEIGGCTPWVLVGMIVLLFNMAQRQALIRHCLFVRSM 160

The following BLAST results are available for this feature:
BLAST of MELO3C021812T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LW23_CUCSA1.1e-8093.13Uncharacterized protein OS=Cucumis sativus GN=Csa_1G554550 PE=4 SV=1[more]
BLAST of MELO3C021812T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210872|gb|KGN65968.1|1.5e-8093.13hypothetical protein Csa_1G554550 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C021812MELO3C021812gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C021812T1MELO3C021812T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C021812T1.cds1MELO3C021812T1.cds1CDS