MELO3C021667T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C021667T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPhospholipid-translocating ATPase
Locationchr12 : 15246534 .. 15246785 (+)
Sequence length252
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCAAAAAAATGGTATTAATTGGAAAGTTGTCCAAAATAAGTGCATATGGGACGTGTCCGAAGTGGACGATGTTGAGAATGAGCAACTGAATGTACTCGAAATCATTGTTGGCCATCGAGTCGACGGACACATTGAGGATGACACTCTTATGGTTGAAAGACTGGTTGTGTGTCATGTTGCTGACGACTTCATAGATGATGATGATGAACAATTGTCACATCAAAGCGAATCAAGCGACGACGAATGA

mRNA sequence

ATGACCCAAAAAAATGGTATTAATTGGAAAGTTGTCCAAAATAAGTGCATATGGGACGTGTCCGAAGTGGACGATGTTGAGAATGAGCAACTGAATGTACTCGAAATCATTGTTGGCCATCGAGTCGACGGACACATTGAGGATGACACTCTTATGGTTGAAAGACTGGTTGTGTGTCATGTTGCTGACGACTTCATAGATGATGATGATGAACAATTGTCACATCAAAGCGAATCAAGCGACGACGAATGA

Coding sequence (CDS)

ATGACCCAAAAAAATGGTATTAATTGGAAAGTTGTCCAAAATAAGTGCATATGGGACGTGTCCGAAGTGGACGATGTTGAGAATGAGCAACTGAATGTACTCGAAATCATTGTTGGCCATCGAGTCGACGGACACATTGAGGATGACACTCTTATGGTTGAAAGACTGGTTGTGTGTCATGTTGCTGACGACTTCATAGATGATGATGATGAACAATTGTCACATCAAAGCGAATCAAGCGACGACGAATGA

Protein sequence

MTQKNGINWKVVQNKCIWDVSEVDDVENEQLNVLEIIVGHRVDGHIEDDTLMVERLVVCHVADDFIDDDDEQLSHQSESSDDE*
Homology
[Close]
BLAST of MELO3C021667T1 vs. NCBI nr
Match: gi|659086523|ref|XP_008443978.1| (PREDICTED: uncharacterized protein LOC103487435 [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 2.9e-19
Identity = 58/91 (63.74%), Postives = 66/91 (72.53%), Query Frame = 1 

Query: 4   KNGINWKV---VQNKCIWDVSEVDDVENEQLNVLEIIVGHRVDGHIEDDTL--------M 63
           K G +WKV   VQNK   DV EV+DVENEQL+VLEI+VGH VD HIEDDTL        M
Sbjct: 742 KYGTSWKVIQMVQNKHTSDVLEVEDVENEQLDVLEIVVGHHVDEHIEDDTLCRVDVDPTM 801

Query: 64  VERLVVCHVADDFIDDDDEQLSHQSESSDDE 84
           VER VV H+ D+FI+DDDEQLS Q+ SSD E
Sbjct: 802 VERSVVQHLVDNFINDDDEQLSPQNRSSDGE 832

[Close]
BLAST of MELO3C021667T1 vs. NCBI nr
Match: gi|659131763|ref|XP_008465845.1| (PREDICTED: uncharacterized protein LOC103503439 [Cucumis melo])

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 1 

Query: 19  DVSEVDDVENEQLNVLEIIVGHRVDGHIEDDTL--------MVERLVVCHV-ADDF---- 78
           +V E +DVE+  +NVLEI++ H+VD HIEDDTL        +VER VVCHV  D++    
Sbjct: 215 NVPEEEDVESNHINVLEILISHQVDDHIEDDTLCRTNIDPTIVERSVVCHVDVDEYLSHA 274

The following BLAST results are available for this feature:
BLAST of MELO3C021667T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659086523|ref|XP_008443978.1|2.9e-1963.74PREDICTED: uncharacterized protein LOC103487435 [Cucumis melo][more]
gi|659131763|ref|XP_008465845.1|1.4e-0850.68PREDICTED: uncharacterized protein LOC103503439 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C021667MELO3C021667gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C021667T1MELO3C021667T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C021667T1.cds1MELO3C021667T1.cds1CDS