MELO3C020335.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C020335.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionU4/U6 small nuclear ribonucleoprotein Prp3, putative
Locationchr06 : 13801060 .. 13801347 (+)
Sequence length288
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGAACCTACCGATATACCATCAGCAAGTGTGCCCCAGAATTTGTAACATCCTAGTCATTCCCTTCCTATCAAGGTATCTTCAATTTCTACCACAAATGAAAATAAGGGAGTTAGTATTACCAGATCTCATGAGGTTCATGGAAAATCTAGTACAGATGGGACATCCTCAACTGCTGGGAAAAGTGGAAATCTCTCTCTTGATGCTTTAACAAAAGCTAAGAAAGCTTTACAGATGCAGAAAGAATTAGCCGAGAAGTTGAAGAAAATTTCCCTGGTAAGTTAG

mRNA sequence

ATGGTGGAACCTACCGATATACCATCAGCAAGTGTGCCCCAGAATTTGTAACATCCTAGTCATTCCCTTCCTATCAAGGTATCTTCAATTTCTACCACAAATGAAAATAAGGGAGTTAGTATTACCAGATCTCATGAGGTTCATGGAAAATCTAGTACAGATGGGACATCCTCAACTGCTGGGAAAAGTGGAAATCTCTCTCTTGATGCTTTAACAAAAGCTAAGAAAGCTTTACAGATGCAGAAAGAATTAGCCGAGAAGTTGAAGAAAATTTCCCTGGTAAGTTAG

Coding sequence (CDS)

ATGAAAATAAGGGAGTTAGTATTACCAGATCTCATGAGGTTCATGGAAAATCTAGTACAGATGGGACATCCTCAACTGCTGGGAAAAGTGGAAATCTCTCTCTTGATGCTTTAA

Protein sequence

MKIRELVLPDLMRFMENLVQMGHPQLLGKVEISLLML
Homology
[Close]
BLAST of MELO3C020335.2.1 vs. NCBI nr
Match: EEF37334.1 (U4/U6 small nuclear ribonucleoprotein Prp3, putative [Ricinus communis])

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-06
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 1  MKIRELVLPDLMRFMENLVQMGHPQLLGKVEISLLM 37
          MKIRELVLPDLMRF+ENLVQMGH QLLGKVE+  LM
Sbjct: 1  MKIRELVLPDLMRFLENLVQMGHLQLLGKVELYPLM 36

[Close]
BLAST of MELO3C020335.2.1 vs. TrEMBL
Match: tr|B9SGG8|B9SGG8_RICCO (U4/U6 small nuclear ribonucleoprotein Prp3, putative OS=Ricinus communis OX=3988 GN=RCOM_0745880 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-06
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0 

Query: 1  MKIRELVLPDLMRFMENLVQMGHPQLLGKVEISLLM 37
          MKIRELVLPDLMRF+ENLVQMGH QLLGKVE+  LM
Sbjct: 1  MKIRELVLPDLMRFLENLVQMGHLQLLGKVELYPLM 36

The following BLAST results are available for this feature:
BLAST of MELO3C020335.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
EEF37334.12.4e-0686.11U4/U6 small nuclear ribonucleoprotein Prp3, putative [Ricinus communis][more]
BLAST of MELO3C020335.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C020335.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C020335.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|B9SGG8|B9SGG8_RICCO1.6e-0686.11U4/U6 small nuclear ribonucleoprotein Prp3, putative OS=Ricinus communis OX=3988... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0019013 viral nucleocapsid
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C020335.2MELO3C020335.2gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C020335.2.1.exon.1MELO3C020335.2.1.exon.1exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C020335.2.1.five_prime_UTR.1MELO3C020335.2.1.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C020335.2.1.CDS.1MELO3C020335.2.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C020335.2.1.three_prime_UTR.1MELO3C020335.2.1.three_prime_UTR.1three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C020335.2.1MELO3C020335.2.1-proteinpolypeptide