MELO3C020031T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020031T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Putative ribonuclease H protein
Location	chr10 : 11898341 .. 11898700 (+)
Sequence length	360

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTCCTTGCTAAATGGGGGTGGAGGTACATGAAGGAAAATACTGCACTGTGGAGGCAAGTGCTCAGAAGCATTCATGGCAGAGAAACATTTGATTGGCGTACTCAAAGCAAATCAAGAAATAGTTTAAGAAGCCCTTGGGTCGACATCTCAAGAGAATGGGAAAAGGTGGAAATATTGGCACCCTTCAAACTTGGTGGTGGAAGAAGAGTGACATTCTGGGCAGATTCATGGGCTGGAGAAATCCCTCTAGAAACTCAGTTTTTCAGAATATCGTTGCTACCTACCAGCTCAGTTGCTACCCATTGGGATAGTGACACAAATTCTTGGTCTATAGTGTTCCGAAGATTGCTGTAA

mRNA sequence

ATGGCTCTCCTTGCTAAATGGGGGTGGAGGTACATGAAGGAAAATACTGCACTGTGGAGGCAAGTGCTCAGAAGCATTCATGGCAGAGAAACATTTGATTGGCGTACTCAAAGCAAATCAAGAAATAGTTTAAGAAGCCCTTGGGTCGACATCTCAAGAGAATGGGAAAAGGTGGAAATATTGGCACCCTTCAAACTTGGTGGTGGAAGAAGAGTGACATTCTGGGCAGATTCATGGGCTGGAGAAATCCCTCTAGAAACTCAGTTTTTCAGAATATCGTTGCTACCTACCAGCTCAGTTGCTACCCATTGGGATAGTGACACAAATTCTTGGTCTATAGTGTTCCGAAGATTGCTGTAA

Coding sequence (CDS)

ATGGCTCTCCTTGCTAAATGGGGGTGGAGGTACATGAAGGAAAATACTGCACTGTGGAGGCAAGTGCTCAGAAGCATTCATGGCAGAGAAACATTTGATTGGCGTACTCAAAGCAAATCAAGAAATAGTTTAAGAAGCCCTTGGGTCGACATCTCAAGAGAATGGGAAAAGGTGGAAATATTGGCACCCTTCAAACTTGGTGGTGGAAGAAGAGTGACATTCTGGGCAGATTCATGGGCTGGAGAAATCCCTCTAGAAACTCAGTTTTTCAGAATATCGTTGCTACCTACCAGCTCAGTTGCTACCCATTGGGATAGTGACACAAATTCTTGGTCTATAGTGTTCCGAAGATTGCTGTAA

Protein sequence

MALLAKWGWRYMKENTALWRQVLRSIHGRETFDWRTQSKSRNSLRSPWVDISREWEKVEILAPFKLGGGRRVTFWADSWAGEIPLETQFFRISLLPTSSVATHWDSDTNSWSIVFRRLL*

Homology

[Close]

BLAST of MELO3C020031T1 vs. TrEMBL
Match: A5C614_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007623 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.4e-15
Identity = 47/123 (38.21%), Postives = 70/123 (56.91%), Query Frame = 1


Query: 1    MALLAKWGWRYMKENTALWRQVLRSIHGRETFDWRTQSKSRNSLRSPWVDISREWEKVEI 60
            +ALL KW WRY +E +ALW QV+ SI+G  +  W   +  R S R PW  I+  ++   +
Sbjct: 931  LALLGKWLWRYPREGSALWHQVILSIYGSHSNGWDANTLVRWSHRCPWKAIAXVFQGFSL 990

Query: 61   LAPFKLGGGRRVTFWADSWAGEIPLETQF---FRISLLPTSSVAT-HWDSDTNSWSIVFR 120
               + +G G R+ FW D W G+ PLETQ+   FR+ +    S+++    S   SW++ FR
Sbjct: 991  FTRYVVGNGERIXFWEDLWWGDQPLETQYPRLFRVVVDKNISISSVLGPSRPFSWNLNFR 1050

[Close]

BLAST of MELO3C020031T1 vs. TrEMBL
Match: A5AF89_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016753 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.4e-15
Identity = 50/125 (40.00%), Postives = 71/125 (56.80%), Query Frame = 1


Query: 1   MALLAKWGWRYMKENTALWRQVLRSIHGRETFDWRTQSKSRNSLRSPWVDISREWEKVEI 60
           +ALL KW WRY +E +ALW QV+ SI+G  +  W   +  R S R PW  IS+ +++   
Sbjct: 836 LALLGKWLWRYPREGSALWHQVILSIYGSHSNGWDANTIVRWSHRCPWKAISQVFQEFSS 895

Query: 61  LAPFKLGGGRRVTFWADSWAGEIPLETQF---FRISL---LPTSSVATHWDSDTNSWSIV 120
              F +G G R+ FW D W G+ PL +Q+   FR+ L   +P SSV     +   SW++ 
Sbjct: 896 FTRFVVGNGERIRFWEDLWWGDQPLGSQYPSLFRVVLDKNIPISSVL--GPTRPFSWNLN 955

[Close]

BLAST of MELO3C020031T1 vs. TrEMBL
Match: A5AF89_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016753 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.9e-11
Identity = 35/92 (38.04%), Postives = 54/92 (58.70%), Query Frame = 1


Query: 1   MALLAKWGWRYMKENTALWRQVLRSIHGRETFDWRTQSKSRNSLRSPWVDISREWEKVEI 60
           +ALL KW WRY +E +ALW +V+ SI+G  +  W   +  R S R PW  I++ +++   
Sbjct: 53  VALLGKWLWRYHREGSALWHKVISSINGSHSNGWDANTIVRWSHRCPWKAITQVFQEFSK 112

Query: 61  LAPFKLGGGRRVTFWADSWAGEIPLETQFFRI 93
              F +G G R+ FW D W G+  L +Q+ R+
Sbjct: 113 FTWFAVGNGDRIRFWEDLWWGDQSLSSQYPRL 144

HSP 2 Score: 89.0 bits (219), Expect = 4.4e-15
Identity = 50/128 (39.06%), Postives = 72/128 (56.25%), Query Frame = 1


Query: 1   MALLAKWGWRYMKENTALWRQVLRSIHGRETFDWRTQSKSRNSLRSPWVDISREWEKVEI 60
           +ALL KW WRY +E  ALW QV+ SI+G  +  W   +  R S R PW  I++ +++  +
Sbjct: 257 LALLGKWLWRYPREGLALWHQVILSIYGLHSNGWDANTLVRWSHRCPWKAIAQVFQEFSL 316

Query: 61  LAPFKLGGGRRVTFWADSWAGEIPLETQF---FRISL---LPTSSV---ATHWDSDTNSW 120
              F +G G R+ FW D W G+ PL TQ+   FR+ +   +P SSV     H+     SW
Sbjct: 317 FTRFVVGNGERIRFWEDLWWGDQPLGTQYPKLFRVVVDKNIPISSVLGPTRHF-----SW 376

[Close]

BLAST of MELO3C020031T1 vs. TrEMBL
Match: A5C624_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040148 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 9.7e-15
Identity = 50/125 (40.00%), Postives = 70/125 (56.00%), Query Frame = 1


Query: 1    MALLAKWGWRYMKENTALWRQVLRSIHGRETFDWRTQSKSRNSLRSPWVDISREWEKVEI 60
            +ALL KW WRY +E  ALW QV+ SI+G  +  W   +  R S R PW  IS+ +++   
Sbjct: 1603 LALLGKWLWRYPREGXALWXQVILSIYGSHSNGWDANTIVRWSHRCPWKAISQVFQEFSS 1662

Query: 61   LAPFKLGGGRRVTFWADSWAGEIPLETQF---FRISL---LPTSSVATHWDSDTNSWSIV 120
               F +G G R+ FW D W G+ PL +Q+   FR+ L   +P SSV     +   SW++ 
Sbjct: 1663 FTRFVVGNGERIRFWEDLWWGDQPLGSQYPSLFRVVLDKNIPISSVL--GPTRPFSWNLN 1722

[Close]

BLAST of MELO3C020031T1 vs. TrEMBL
Match: A5ADL9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017151 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-14
Identity = 49/125 (39.20%), Postives = 70/125 (56.00%), Query Frame = 1


Query: 1   MALLAKWGWRYMKENTALWRQVLRSIHGRETFDWRTQSKSRNSLRSPWVDISREWEKVEI 60
           +ALL KW WRY +E +ALW QV+ SI+G  +  W   +  R S R PW  IS+ ++    
Sbjct: 643 LALLGKWLWRYPREGSALWHQVILSIYGSHSNGWDANTIVRWSHRCPWKAISQVFQVFSS 702

Query: 61  LAPFKLGGGRRVTFWADSWAGEIPLETQF---FRISL---LPTSSVATHWDSDTNSWSIV 120
              F +G G ++ FW D W G+ PL +Q+   FR+ L   +P SSV     +   SW++ 
Sbjct: 703 FTQFVVGNGEKIRFWEDLWWGDQPLGSQYLSLFRVVLDKNIPISSVL--GPTRPFSWNLN 762

[Close]

BLAST of MELO3C020031T1 vs. NCBI nr
Match: gi|658048925|ref|XP_008360144.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica])

HSP 1 Score: 89.4 bits (220), Expect = 4.8e-15
Identity = 51/123 (41.46%), Postives = 67/123 (54.47%), Query Frame = 1


Query: 2   ALLAKWGWRYMKENTALWRQVLRSIHGRETFDWRTQSKSRNSLRSPWVDISREWEKVEIL 61
           ALLAKW WR+ KE  +LW +V+RS +G +   W      R S RSPW DIS   +     
Sbjct: 393 ALLAKWLWRFPKEPHSLWHKVIRSKYGLQDNGWNAFPPIRGSXRSPWKDISIGSQLFLHC 452

Query: 62  APFKLGGGRRVTFWADSWAGEIPLETQFFRISLLP---TSSVATHWDSDTN--SWSIVFR 120
             F++G G RV FW D W    PL+ QF R+ LL      ++++  D  TN  SW+  FR
Sbjct: 453 CKFEVGNGERVRFWEDGWLDGGPLKEQFPRLFLLSRKHNQNISSFVDLSTNSLSWNFDFR 512

[Close]

BLAST of MELO3C020031T1 vs. NCBI nr
Match: gi|147795395|emb|CAN69984.1| (hypothetical protein VITISV_028468 [Vitis vinifera])

HSP 1 Score: 89.0 bits (219), Expect = 6.2e-15
Identity = 50/128 (39.06%), Postives = 72/128 (56.25%), Query Frame = 1


Query: 1   MALLAKWGWRYMKENTALWRQVLRSIHGRETFDWRTQSKSRNSLRSPWVDISREWEKVEI 60
           +ALL KW WRY +E  ALW QV+ SI+G  +  W   +  R S R PW  I++ +++  +
Sbjct: 257 LALLGKWLWRYPREGLALWHQVILSIYGLHSNGWDANTLVRWSHRCPWKAIAQVFQEFSL 316

Query: 61  LAPFKLGGGRRVTFWADSWAGEIPLETQF---FRISL---LPTSSV---ATHWDSDTNSW 120
              F +G G R+ FW D W G+ PL TQ+   FR+ +   +P SSV     H+     SW
Sbjct: 317 FTRFVVGNGERIRFWEDLWWGDQPLGTQYPKLFRVVVDKNIPISSVLGPTRHF-----SW 376

[Close]

BLAST of MELO3C020031T1 vs. NCBI nr
Match: gi|658030603|ref|XP_008350747.1| (PREDICTED: uncharacterized protein LOC103414113 [Malus domestica])

HSP 1 Score: 89.0 bits (219), Expect = 6.2e-15
Identity = 51/123 (41.46%), Postives = 67/123 (54.47%), Query Frame = 1


Query: 2    ALLAKWGWRYMKENTALWRQVLRSIHGRETFDWRTQSKSRNSLRSPWVDISREWEKVEIL 61
            ALLAKW WR+ KE  +LW +V+RS +G +   W      R S RSPW DIS   +     
Sbjct: 1416 ALLAKWLWRFPKEPHSLWHKVIRSKYGLQDNGWNAFPPIRGSSRSPWKDISIGSQLFLHC 1475

Query: 62   APFKLGGGRRVTFWADSWAGEIPLETQFFRISLLP---TSSVATHWDSDTN--SWSIVFR 120
              F++G G RV FW D W    PL+ QF R+ LL      ++++  D  TN  SW+  FR
Sbjct: 1476 CKFEVGNGERVRFWEDGWLDGGPLKEQFPRLFLLSRKHNQNISSFVDLSTNSLSWNFDFR 1535

[Close]

BLAST of MELO3C020031T1 vs. NCBI nr
Match: gi|147785638|emb|CAN77641.1| (hypothetical protein VITISV_007623 [Vitis vinifera])

HSP 1 Score: 89.0 bits (219), Expect = 6.2e-15
Identity = 47/123 (38.21%), Postives = 70/123 (56.91%), Query Frame = 1


Query: 1    MALLAKWGWRYMKENTALWRQVLRSIHGRETFDWRTQSKSRNSLRSPWVDISREWEKVEI 60
            +ALL KW WRY +E +ALW QV+ SI+G  +  W   +  R S R PW  I+  ++   +
Sbjct: 931  LALLGKWLWRYPREGSALWHQVILSIYGSHSNGWDANTLVRWSHRCPWKAIAXVFQGFSL 990

Query: 61   LAPFKLGGGRRVTFWADSWAGEIPLETQF---FRISLLPTSSVAT-HWDSDTNSWSIVFR 120
               + +G G R+ FW D W G+ PLETQ+   FR+ +    S+++    S   SW++ FR
Sbjct: 991  FTRYVVGNGERIXFWEDLWWGDQPLETQYPRLFRVVVDKNISISSVLGPSRPFSWNLNFR 1050

[Close]

BLAST of MELO3C020031T1 vs. NCBI nr
Match: gi|147819440|emb|CAN73354.1| (hypothetical protein VITISV_016753 [Vitis vinifera])

HSP 1 Score: 89.0 bits (219), Expect = 6.2e-15
Identity = 50/125 (40.00%), Postives = 71/125 (56.80%), Query Frame = 1


Query: 1   MALLAKWGWRYMKENTALWRQVLRSIHGRETFDWRTQSKSRNSLRSPWVDISREWEKVEI 60
           +ALL KW WRY +E +ALW QV+ SI+G  +  W   +  R S R PW  IS+ +++   
Sbjct: 836 LALLGKWLWRYPREGSALWHQVILSIYGSHSNGWDANTIVRWSHRCPWKAISQVFQEFSS 895

Query: 61  LAPFKLGGGRRVTFWADSWAGEIPLETQF---FRISL---LPTSSVATHWDSDTNSWSIV 120
              F +G G R+ FW D W G+ PL +Q+   FR+ L   +P SSV     +   SW++ 
Sbjct: 896 FTRFVVGNGERIRFWEDLWWGDQPLGSQYPSLFRVVLDKNIPISSVL--GPTRPFSWNLN 955

The following BLAST results are available for this feature:

BLAST of MELO3C020031T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A5C614_VITVI	4.4e-15	38.21	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007623 PE=4 SV=1	[more]
A5AF89_VITVI	4.4e-15	40.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016753 PE=4 SV=1	[more]
A5AF89_VITVI	2.9e-11	38.04	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016753 PE=4 SV=1	[more]
A5C624_VITVI	9.7e-15	40.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040148 PE=4 SV=1	[more]
A5ADL9_VITVI	1.7e-14	39.20	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017151 PE=4 SV=1	[more]

BLAST of MELO3C020031T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|658048925\|ref\|XP_008360144.1\|	4.8e-15	41.46	PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]	[more]
gi\|147795395\|emb\|CAN69984.1\|	6.2e-15	39.06	hypothetical protein VITISV_028468 [Vitis vinifera]	[more]
gi\|658030603\|ref\|XP_008350747.1\|	6.2e-15	41.46	PREDICTED: uncharacterized protein LOC103414113 [Malus domestica]	[more]
gi\|147785638\|emb\|CAN77641.1\|	6.2e-15	38.21	hypothetical protein VITISV_007623 [Vitis vinifera]	[more]
gi\|147819440\|emb\|CAN73354.1\|	6.2e-15	40.00	hypothetical protein VITISV_016753 [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C020031	MELO3C020031	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C020031T1	MELO3C020031T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C020031T1.cds1	MELO3C020031T1.cds1	CDS