MELO3C019766T1 (mRNA) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C019766T1
Type	mRNA
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	LexA repressor
Location	chr11 : 24669491 .. 24669796 (-)
Sequence length	306

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGGAGAAGAAGACGAAGTTGATGAGGATTATATCTTTAAGTTCATGGACAATTTCATATGCAAGCCTTTGGAAAATGAAATTGAAGATATAATCCAGTTCCAAAGCAACCTACAAGAGATACATTTGCCAAGTCAAAGAAAATTAAGCGACTTAAAGTTGAAGATGGACAATGCAAATGTAAACAATGAGGCACAATTACATCAACTTAAAGGGGAAATCATGGAACTCAAAACGCATAACCAGGAGTTTCAAAAGCAACTTTTTATAATGAGGGAGCAAAGTGAGGCGATGAAGGAATAG

mRNA sequence

ATGAGAGGAGAAGAAGACGAAGTTGATGAGGATTATATCTTTAAGTTCATGGACAATTTCATATGCAAGCCTTTGGAAAATGAAATTGAAGATATAATCCAGTTCCAAAGCAACCTACAAGAGATACATTTGCCAAGTCAAAGAAAATTAAGCGACTTAAAGTTGAAGATGGACAATGCAAATGTAAACAATGAGGCACAATTACATCAACTTAAAGGGGAAATCATGGAACTCAAAACGCATAACCAGGAGTTTCAAAAGCAACTTTTTATAATGAGGGAGCAAAGTGAGGCGATGAAGGAATAG

Coding sequence (CDS)

ATGAGAGGAGAAGAAGACGAAGTTGATGAGGATTATATCTTTAAGTTCATGGACAATTTCATATGCAAGCCTTTGGAAAATGAAATTGAAGATATAATCCAGTTCCAAAGCAACCTACAAGAGATACATTTGCCAAGTCAAAGAAAATTAAGCGACTTAAAGTTGAAGATGGACAATGCAAATGTAAACAATGAGGCACAATTACATCAACTTAAAGGGGAAATCATGGAACTCAAAACGCATAACCAGGAGTTTCAAAAGCAACTTTTTATAATGAGGGAGCAAAGTGAGGCGATGAAGGAATAG

Protein sequence

MRGEEDEVDEDYIFKFMDNFICKPLENEIEDIIQFQSNLQEIHLPSQRKLSDLKLKMDNANVNNEAQLHQLKGEIMELKTHNQEFQKQLFIMREQSEAMKE*

Homology

[Close]

BLAST of MELO3C019766T1 vs. TrEMBL
Match: A0A0A0KDS3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G024390 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.8e-12
Identity = 42/85 (49.41%), Postives = 58/85 (68.24%), Query Frame = 1


Query: 17  MDNFICKPLENEIEDIIQFQSNLQEIHLPSQRKLSDLKLKMDNANVNNEAQLHQLKGEIM 76
           MD  IC+P+    ED I+ Q+ LQE  L SQ+++SDLK +MDNAN + +AQL+Q   +IM
Sbjct: 1   MDEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIM 60

Query: 77  ELKTHNQEFQKQLFIMREQSEAMKE 102
           EL T N E Q +L  + EQ+EA+ E
Sbjct: 61  ELITQNGELQGELLGVSEQNEALIE 85

[Close]

BLAST of MELO3C019766T1 vs. NCBI nr
Match: gi|700190727|gb|KGN45931.1| (hypothetical protein Csa_6G024390 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 5.5e-12
Identity = 42/85 (49.41%), Postives = 58/85 (68.24%), Query Frame = 1


Query: 17  MDNFICKPLENEIEDIIQFQSNLQEIHLPSQRKLSDLKLKMDNANVNNEAQLHQLKGEIM 76
           MD  IC+P+    ED I+ Q+ LQE  L SQ+++SDLK +MDNAN + +AQL+Q   +IM
Sbjct: 1   MDEGICRPMGRGFEDRIKCQNVLQETQLRSQKQVSDLKFRMDNANTSTKAQLNQQDEKIM 60

Query: 77  ELKTHNQEFQKQLFIMREQSEAMKE 102
           EL T N E Q +L  + EQ+EA+ E
Sbjct: 61  ELITQNGELQGELLGVSEQNEALIE 85

The following BLAST results are available for this feature:

BLAST of MELO3C019766T1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDS3_CUCSA	3.8e-12	49.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G024390 PE=4 SV=1	[more]

BLAST of MELO3C019766T1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190727\|gb\|KGN45931.1\|	5.5e-12	49.41	hypothetical protein Csa_6G024390 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MELO3C019766	MELO3C019766	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MELO3C019766T1	MELO3C019766T1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MELO3C019766T1.cds1	MELO3C019766T1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 68..88 scor